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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
Data corrente: |
26/07/2022 |
Data da última atualização: |
10/11/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
CARDOSO, T. F.; BRUSCADIN, J. J.; AFONSO, J.; PETRINI, J.; ANDRADE, B. G. N.; OLIVEIRA, P. S. N. de; MALHEIROS, J. M.; ROCHA, M. I. P.; ZERLOTINI NETO, A.; FERRAZ, J. B. S.; MOURÃO, G. B.; COUTINHO, L. L.; REGITANO, L. C. de A. |
Afiliação: |
UFSCar; ESALQ/USP; Munster Technological University; UFSCar; Federal University of Latin American Integration, Foz do Iguaçu; UFSCar; ADHEMAR ZERLOTINI NETO, CNPTIA; FZEA/USP; ESALQ/USP; ESALQ/USP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE. |
Título: |
EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle. |
Ano de publicação: |
2022 |
Fonte/Imprenta: |
Mammalian Genome, v. 33, n. 4, p. 619-628, Dec. 2022. |
DOI: |
https://doi.org/10.1007/s00335-022-09959-8 |
Idioma: |
Inglês |
Conteúdo: |
Abstract. Cis-acting effects of noncoding variants on gene expression and regulatory molecules constitute a significant factor for phenotypic variation in complex traits. To provide new insights into the impacts of single-nucleotide polymorphisms (SNPs) on transcription factors (TFs) and transcription cofactors (TcoF) coding genes, we carried out a multi-omic analysis to identify cis-regulatory effects of SNPs on these genes? expression in muscle and describe their association with feed efficiency-related traits in Nelore cattle. As a result, we identified one SNP, the rs137256008C > T, predicted to impact the EEF1A1 gene expression (? = 3.02; P-value = 3.51E-03) and the residual feed intake trait (? = -3.47; P-value = 0.02). This SNP was predicted to modify transcription factor sites and overlaps with several QTL for feed efficiency traits. In addition, coexpression network analyses showed that animals containing the T allele of the rs137256008 SNP may be triggering changes in the gene network. Therefore, our analyses reinforce and contribute to a better understanding of the biological mechanisms underlying gene expression control of feed efficiency traits in bovines. The cis-regulatory SNP can be used as biomarker for feed efficiency in Nelore cattle. |
Palavras-Chave: |
Cofatores de transcrição; Expressão gênica; Fatores de transcrição; Loci de característica quantitativa; Nelore cattle; Polimorfismos de nucleotídeo único. |
Thesagro: |
Gado Nelore. |
Thesaurus Nal: |
Gene expression; Quantitative trait loci; Single nucleotide polymorphism; Transcription (genetics); Transcription factors. |
Categoria do assunto: |
-- G Melhoramento Genético |
Marc: |
LEADER 02647naa a2200421 a 4500 001 2144939 005 2022-11-10 008 2022 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1007/s00335-022-09959-8$2DOI 100 1 $aCARDOSO, T. F. 245 $aEEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle.$h[electronic resource] 260 $c2022 520 $aAbstract. Cis-acting effects of noncoding variants on gene expression and regulatory molecules constitute a significant factor for phenotypic variation in complex traits. To provide new insights into the impacts of single-nucleotide polymorphisms (SNPs) on transcription factors (TFs) and transcription cofactors (TcoF) coding genes, we carried out a multi-omic analysis to identify cis-regulatory effects of SNPs on these genes? expression in muscle and describe their association with feed efficiency-related traits in Nelore cattle. As a result, we identified one SNP, the rs137256008C > T, predicted to impact the EEF1A1 gene expression (? = 3.02; P-value = 3.51E-03) and the residual feed intake trait (? = -3.47; P-value = 0.02). This SNP was predicted to modify transcription factor sites and overlaps with several QTL for feed efficiency traits. In addition, coexpression network analyses showed that animals containing the T allele of the rs137256008 SNP may be triggering changes in the gene network. Therefore, our analyses reinforce and contribute to a better understanding of the biological mechanisms underlying gene expression control of feed efficiency traits in bovines. The cis-regulatory SNP can be used as biomarker for feed efficiency in Nelore cattle. 650 $aGene expression 650 $aQuantitative trait loci 650 $aSingle nucleotide polymorphism 650 $aTranscription (genetics) 650 $aTranscription factors 650 $aGado Nelore 653 $aCofatores de transcrição 653 $aExpressão gênica 653 $aFatores de transcrição 653 $aLoci de característica quantitativa 653 $aNelore cattle 653 $aPolimorfismos de nucleotídeo único 700 1 $aBRUSCADIN, J. J. 700 1 $aAFONSO, J. 700 1 $aPETRINI, J. 700 1 $aANDRADE, B. G. N. 700 1 $aOLIVEIRA, P. S. N. de 700 1 $aMALHEIROS, J. M. 700 1 $aROCHA, M. I. P. 700 1 $aZERLOTINI NETO, A. 700 1 $aFERRAZ, J. B. S. 700 1 $aMOURÃO, G. B. 700 1 $aCOUTINHO, L. L. 700 1 $aREGITANO, L. C. de A. 773 $tMammalian Genome$gv. 33, n. 4, p. 619-628, Dec. 2022.
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Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
Biblioteca(s): |
Embrapa Agrobiologia. |
Data corrente: |
16/04/2024 |
Data da última atualização: |
16/04/2024 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
A - 3 |
Autoria: |
SILVA, C. S. R. de A.; ARAUJO, E. da S.; COSTA, L. S.; ARAUJO, S. N. de; SILVA JUNIOR, J. B. da; ZIVIANI, M. M.; SILVA, M. S. R. de A. da; GUERRA, J. G. M.; ESPINDOLA, J. A. A.; PINHEIRO, E. F. M. |
Afiliação: |
CAMILLA SANTOS REIS DE ANDRADE DA SILVA, UNIVERSIDADE FEDERAL RURAL DO RIO DE JANEIRO; EDNALDO DA SILVA ARAUJO, CNPAB; LUANA SOUSA COSTA, UNIVERSIDADE FEDERAL DE LAVRAS; SUELLEN NUNES DE ARAÚJO, UNIVERSIDADE FEDERAL RURAL DA AMAZÔNIA; JANDER BARBOSA DA SILVA JUNIOR, INSTITUTO NACIONAL DE PESQUISAS DA AMAZONIA; MELANIA MERLO ZIVIANI, UNIVERSIDADE FEDERAL RURAL DO RIO DE JANEIRO; MAURA SANTOS REIS DE ANDRADE DA SILVA, UNIVERSIDADE FEDERAL RURAL DO RIO DE JANEIRO; JOSE GUILHERME MARINHO GUERRA, CNPAB; JOSE ANTONIO AZEVEDO ESPINDOLA, CNPAB; ÉRIKA FLÁVIA MACHADO PINHEIRO, UNIVERSIDADE FEDERAL RURAL DO RIO DE JANEIRO. |
Título: |
No-till system organic vegetable production under green manure: effect on yield and soil properties. |
Ano de publicação: |
2024 |
Fonte/Imprenta: |
Organic Agriculture, Published: 23 March 2024. |
ISSN: |
1879-4238 |
DOI: |
https://doi.org/10.1007/s13165-024-00460-x |
Idioma: |
Inglês |
Conteúdo: |
n horticulture, the commonly applied agricultural practice of soil tillage often favours soil degradation. Even under organic cultivation, agricultural mechanization can stimulate organic matter mineralization and, consequently, cause soil quality losses. To maintain the soil properties in this production system, it is imperative to adopt a management system that minimizes soil disturbance, avoiding aggregate breakdown and exposure of organic matter to oxidation. This study evaluated the effect of different organic soil management systems on vegetable yield and the physical, chemical and biological properties that define soil quality. Three soil management systems were evaluated: NT- no-till system; CT-RH—conventional tillage with a rotary hoe; and CT-PH- conventional tillage, ploughing and harrowing. Soil aggregation, organic carbon (C) content in aggregates, penetration resistance, gravimetric moisture, organic matter light fraction, soil carbon, epigeal fauna and edaphic macrofauna were evaluated. The study showed that vegetable yields were similar in the different management systems; penetration resistance was the most sensitive physical indicator of soil management; carbon contents in soil macroaggregates and free light fraction (FLF) were the most sensitive chemical indicators to differentiate organic management systems in the soil surface layer. The highest FLF and C contents in soil macroaggregates were observed under CT-RH, followed by NT; the NT system promoted a greater density and richness of soil faunal groups, and multivariate analysis indicated a higher correlation with these biological properties. In conclusion, vegetable crop yields did not differ among the organic production management systems. Menosn horticulture, the commonly applied agricultural practice of soil tillage often favours soil degradation. Even under organic cultivation, agricultural mechanization can stimulate organic matter mineralization and, consequently, cause soil quality losses. To maintain the soil properties in this production system, it is imperative to adopt a management system that minimizes soil disturbance, avoiding aggregate breakdown and exposure of organic matter to oxidation. This study evaluated the effect of different organic soil management systems on vegetable yield and the physical, chemical and biological properties that define soil quality. Three soil management systems were evaluated: NT- no-till system; CT-RH—conventional tillage with a rotary hoe; and CT-PH- conventional tillage, ploughing and harrowing. Soil aggregation, organic carbon (C) content in aggregates, penetration resistance, gravimetric moisture, organic matter light fraction, soil carbon, epigeal fauna and edaphic macrofauna were evaluated. The study showed that vegetable yields were similar in the different management systems; penetration resistance was the most sensitive physical indicator of soil management; carbon contents in soil macroaggregates and free light fraction (FLF) were the most sensitive chemical indicators to differentiate organic management systems in the soil surface layer. The highest FLF and C contents in soil macroaggregates were observed under CT-RH, followed by NT; the NT system promoted a g... Mostrar Tudo |
Thesaurus NAL: |
Horticulture; Soil aggregation; Soil fauna; Soil organic matter; Soil quality. |
Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
Marc: |
LEADER 02698naa a2200313 a 4500 001 2163649 005 2024-04-16 008 2024 bl uuuu u00u1 u #d 022 $a1879-4238 024 7 $ahttps://doi.org/10.1007/s13165-024-00460-x$2DOI 100 1 $aSILVA, C. S. R. de A. 245 $aNo-till system organic vegetable production under green manure$beffect on yield and soil properties.$h[electronic resource] 260 $c2024 520 $an horticulture, the commonly applied agricultural practice of soil tillage often favours soil degradation. Even under organic cultivation, agricultural mechanization can stimulate organic matter mineralization and, consequently, cause soil quality losses. To maintain the soil properties in this production system, it is imperative to adopt a management system that minimizes soil disturbance, avoiding aggregate breakdown and exposure of organic matter to oxidation. This study evaluated the effect of different organic soil management systems on vegetable yield and the physical, chemical and biological properties that define soil quality. Three soil management systems were evaluated: NT- no-till system; CT-RH—conventional tillage with a rotary hoe; and CT-PH- conventional tillage, ploughing and harrowing. Soil aggregation, organic carbon (C) content in aggregates, penetration resistance, gravimetric moisture, organic matter light fraction, soil carbon, epigeal fauna and edaphic macrofauna were evaluated. The study showed that vegetable yields were similar in the different management systems; penetration resistance was the most sensitive physical indicator of soil management; carbon contents in soil macroaggregates and free light fraction (FLF) were the most sensitive chemical indicators to differentiate organic management systems in the soil surface layer. The highest FLF and C contents in soil macroaggregates were observed under CT-RH, followed by NT; the NT system promoted a greater density and richness of soil faunal groups, and multivariate analysis indicated a higher correlation with these biological properties. In conclusion, vegetable crop yields did not differ among the organic production management systems. 650 $aHorticulture 650 $aSoil aggregation 650 $aSoil fauna 650 $aSoil organic matter 650 $aSoil quality 700 1 $aARAUJO, E. da S. 700 1 $aCOSTA, L. S. 700 1 $aARAUJO, S. N. de 700 1 $aSILVA JUNIOR, J. B. da 700 1 $aZIVIANI, M. M. 700 1 $aSILVA, M. S. R. de A. da 700 1 $aGUERRA, J. G. M. 700 1 $aESPINDOLA, J. A. A. 700 1 $aPINHEIRO, E. F. M. 773 $tOrganic Agriculture, Published: 23 March 2024.
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