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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital. |
Data corrente: |
31/01/2018 |
Data da última atualização: |
21/01/2020 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
CHUD, T. C. S.; BICKHART, D. M.; ZERLOTINI NETO, A.; COLE, J. B.; SILVA, M. V. G. B.; MUNARI, D. P. |
Afiliação: |
TATIANE C. S. CHUD, FCAV/Unesp; DEREK M. BICKHART, FCAV/Unesp; ADHEMAR ZERLOTINI NETO, CNPTIA; JOHN B. COLE, Usda; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; DANÍSIO P. MUNARI, FCAV/Unesp. |
Título: |
Copy number variation in dairy cattle using next-generation sequencing. |
Ano de publicação: |
2018 |
Fonte/Imprenta: |
In: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Abstracts... [S.l.: s.n.], 2018. |
Páginas: |
1 p. |
Idioma: |
Inglês |
Notas: |
PAG 2018. P0490. Na publicação: Adhemar Zerlotini, Marcos Vinicius B. da Silva. |
Conteúdo: |
Gene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future selective breeding. MenosGene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future ... Mostrar Tudo |
Palavras-Chave: |
Copy number variants. |
Thesagro: |
Gado. |
Thesaurus Nal: |
Cattle; Composite breeds. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/171991/1/PL-CopyNumber-PAGXXVI.pdf
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Marc: |
LEADER 02304nam a2200241 a 4500 001 2086860 005 2020-01-21 008 2018 bl uuuu u00u1 u #d 100 1 $aCHUD, T. C. S. 245 $aCopy number variation in dairy cattle using next-generation sequencing.$h[electronic resource] 260 $aIn: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Abstracts... [S.l.: s.n.]$c2018 300 $a1 p. 500 $aPAG 2018. P0490. Na publicação: Adhemar Zerlotini, Marcos Vinicius B. da Silva. 520 $aGene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future selective breeding. 650 $aCattle 650 $aComposite breeds 650 $aGado 653 $aCopy number variants 700 1 $aBICKHART, D. M. 700 1 $aZERLOTINI NETO, A. 700 1 $aCOLE, J. B. 700 1 $aSILVA, M. V. G. B. 700 1 $aMUNARI, D. P.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
Biblioteca(s): |
Embrapa Acre. |
Data corrente: |
16/08/1996 |
Data da última atualização: |
28/06/2021 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
Nacional - A |
Autoria: |
CAMPOS, I. S.; ASSUNÇÃO, M. V. |
Afiliação: |
Ivandir Soares Campos, Embrapa Acre; Marcos Vinícius Assunção, Universidade Federal do Ceará (UFC). |
Título: |
Efeitos do cloreto de sódio na germinação e vigor de plântulas de arroz. |
Ano de publicação: |
1990 |
Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, Brasília, DF, v. 25, n. 6, p. 837-843, jun. 1990. |
ISSN: |
0100-204X (impresso) / 1678-3921 (online) |
Idioma: |
Português |
Conteúdo: |
Este trabalho teve como objetivo avaliar os efeitos delet&ios do NaU na germinação e vigor das cultivares de arroz (Oryza saliva L.) IAC-25, IAC-47, IAC-165, CNA-796019, Lebonnet, IRAT-112 e CICA-8. Amostras de sementes foram colocadas para germinar em solução de NaU com potenciais osmóticos de - 0,4 e - 0,8 Megapascal (MPa). As cultivares IAC-25 e IAC-47 foram consideradas tolerantes à salinidade atá - 0,4 MPa de NaCl; Lebonnet, CNA-796019 e CICA-8 foram consideradas moderadamente tolerantes; a IAC-165 e IRAT-112 pouco tolerantes. Entretanto, a -0,8 MPa, em que todo material foi severamente afetado pela salinidade, as cultivares IAC-25, IAC-47 e CNA-796019 foram as menos sensíveis. A cultivar IAC-25, de maneira geral, foi a mais tolerante à salinidade imposta e a IAC-165 foi a mais sensíveL |
Palavras-Chave: |
Germinación de las semillas; Oryza sativa L; Salinidad del suelo. |
Thesagro: |
Arroz; Características Agronômicas; Cloreto de sódio; Germinação; Solo salino; Teste de vigor; Variedade resistente. |
Thesaurus NAL: |
Agronomic traits; Rice; Seed germination; Soil salinity. |
Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/112453/1/899.pdf
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Marc: |
LEADER 01768naa a2200313 a 4500 001 1492146 005 2021-06-28 008 1990 bl uuuu u00u1 u #d 022 $a0100-204X (impresso) / 1678-3921 (online) 100 1 $aCAMPOS, I. S. 245 $aEfeitos do cloreto de sódio na germinação e vigor de plântulas de arroz.$h[electronic resource] 260 $c1990 520 $aEste trabalho teve como objetivo avaliar os efeitos delet&ios do NaU na germinação e vigor das cultivares de arroz (Oryza saliva L.) IAC-25, IAC-47, IAC-165, CNA-796019, Lebonnet, IRAT-112 e CICA-8. Amostras de sementes foram colocadas para germinar em solução de NaU com potenciais osmóticos de - 0,4 e - 0,8 Megapascal (MPa). As cultivares IAC-25 e IAC-47 foram consideradas tolerantes à salinidade atá - 0,4 MPa de NaCl; Lebonnet, CNA-796019 e CICA-8 foram consideradas moderadamente tolerantes; a IAC-165 e IRAT-112 pouco tolerantes. Entretanto, a -0,8 MPa, em que todo material foi severamente afetado pela salinidade, as cultivares IAC-25, IAC-47 e CNA-796019 foram as menos sensíveis. A cultivar IAC-25, de maneira geral, foi a mais tolerante à salinidade imposta e a IAC-165 foi a mais sensíveL 650 $aAgronomic traits 650 $aRice 650 $aSeed germination 650 $aSoil salinity 650 $aArroz 650 $aCaracterísticas Agronômicas 650 $aCloreto de sódio 650 $aGerminação 650 $aSolo salino 650 $aTeste de vigor 650 $aVariedade resistente 653 $aGerminación de las semillas 653 $aOryza sativa L 653 $aSalinidad del suelo 700 1 $aASSUNÇÃO, M. V. 773 $tPesquisa Agropecuária Brasileira, Brasília, DF$gv. 25, n. 6, p. 837-843, jun. 1990.
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