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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
19/01/2022 |
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Data da última atualização: |
19/01/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SUELA, M. M.; AZEVEDO, C. F.; NASCIMENTO, M.; NASCIMENTO, A. C. C.; RESENDE, M. D. V. de. |
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Afiliação: |
MATHEUS M. SUELA, UFV; CAMILA FERREIRA AZEVEDO, UFV; MOYSÉS NASCIMENTO, UFV; ANA CAROLINA CAMPANA NASCIMENTO, UFV; MARCOS DEON VILELA DE RESENDE, CNPCa. |
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Título: |
Regional heritability mapping and genome-wide association identify loci for rice traits. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Crop Science, v. 62, n. 1, p. 1-48, 2022. |
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DOI: |
https://doi.org/10.1002/csc2.20706 |
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Idioma: |
Inglês |
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Conteúdo: |
Although genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the QTL noted in the Q-TARO and Gramene QTL databases. MenosAlthough genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the ... Mostrar Tudo |
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Thesagro: |
Arroz; Melhoramento Genético Vegetal. |
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Thesaurus Nal: |
Bayesian theory; Genomics; Plant breeding; Rice. |
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Categoria do assunto: |
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Marc: |
LEADER 02294naa a2200253 a 4500
001 2139191
005 2022-01-19
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1002/csc2.20706$2DOI
100 1 $aSUELA, M. M.
245 $aRegional heritability mapping and genome-wide association identify loci for rice traits.$h[electronic resource]
260 $c2022
520 $aAlthough genome-wide association studies (GWAS) based on single-marker analysis have been widely applied in plant breeding programs, the effectivity of the methodology is still undermined by high false-positive rates and the limited power to detect associations. Bayesian methods estimated marker effects simultaneously proved to be efficient, indicating genes with important effects. Regional heritability mapping (RHM) on the other hand determines the genome region (group of markers) associated with the phenotype, consider population structure and familial relatedness and is more powerful to detect quantitative trait loci (QTL) and reduced false-positive rates than single marker methodologies. A single-marker mixed model (SM-MM), bayesian approach and RHM were used for 11 traits in 413 rice accessions genotyped for 44,100 SNP markers. Using RHM in regions of 0.21Mb and 0.69 Mb, respectively, detected 5 and 7 associated regions with 163 and 569 single nucleotide polymorphisms (SNPs), bayesian method with regions of 0.21Mb and 0.69 Mb detected regions for all traits, whereas SM-MM detected 4 single SNP?trait associations. For the 11 traits, RHM explained around 25-40 and 25-76% using genome regions of 0.21 and 0.69Mb, respectively, and SM-MM using single markers explained 1?7% of the genomic heritability. Regional heritability mapping was more effective than SM-MM in capturing major proportions of genomic heritability. The regions found in this study were within or close to the QTL noted in the Q-TARO and Gramene QTL databases.
650 $aBayesian theory
650 $aGenomics
650 $aPlant breeding
650 $aRice
650 $aArroz
650 $aMelhoramento Genético Vegetal
700 1 $aAZEVEDO, C. F.
700 1 $aNASCIMENTO, M.
700 1 $aNASCIMENTO, A. C. C.
700 1 $aRESENDE, M. D. V. de
773 $tCrop Science$gv. 62, n. 1, p. 1-48, 2022.
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Registro original: |
Embrapa Café (CNPCa) |
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Biblioteca(s): |
Embrapa Unidades Centrais. |
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Data corrente: |
08/11/2023 |
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Data da última atualização: |
25/01/2024 |
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Autoria: |
FARIA, M. M.; CINTRA, P. H. N.; AMORIM, V. A.; CAMPOS, T. S.; ROCHA, E. C.; RODRIGUES, F. |
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Afiliação: |
MARCELO MACEDO FARIA, UNIVERSIDADE ESTADUAL DE GOIÁS; PEDRO HENRIQUE NASCIMENTO CINTRA, UNIVERSIDADE ESTADUAL DE GOIÁS; VÍCTOR ALVES AMORIM, UNIVERSIDSDE FEDERAL DE VIÇOSA; THIAGO SOUZA CAMPOS, UNIVERSIDADE ESTADUAL PAULISTA JÚLIO DE MESQUITA FILHO; EDNALDO CÂNDIDO ROCHA, UNIVERSIDADE ESTADUAL DE GOIÁS; FABRICIO RODRIGUES, UNIVERSIDADE ESTADFUAL DE GOIÁS. |
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Título: |
Interrelationship between potassium rates and the efficiency of Bt genes in the control of Spodoptera frugiperda. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
Pesquisa Agropecuária Brasileira, v. 58, e03241, 2023. |
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DOI: |
https://doi.org/10.1590/S1678-3921.pab2023.v58.03241 |
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Idioma: |
Inglês |
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Notas: |
Título em português: Inter-relação entre doses de potássio e a eficiência de genes Bt no controle de Spodoptera frugiperda. |
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Conteúdo: |
ABSTRACT - The objective of this work was to identify the effect of potassium rates on Bt transgenic resistance and damage caused by Spodoptera frugiperda in corn plants at different developmental stages. The experimental design was a randomized complete block in a 3x6 factorial arrangement, with three potassium rates (0, 45, and 90 kg ha-¹) and six corn hybrids (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2, and NS92VTPro), with three replicates. The hybrids were evaluated through the analysis of canonical variables. With low potassium rates, the effectiveness of the corn hybrids in controlling the S. frugiperda caterpillar decreases in the different phenological stages. The use of the Bt technology is more efficient under an adequate potassium rate of 90 kg ha-¹ KCl. RESUMO - O objetivo deste trabalho foi identificar o efeito de doses de potássio sobre a resistência transgênica Bt e os danos causados por Spodoptera frugiperda em plantas de milho, em diferentes estádios de desenvolvimento. O delineamento experimental foi de blocos ao acaso, em arranjo fatorial 3x6, com três doses de potássio (0, 45 e 90 kg ha-¹) e seis híbridos de milho (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2 e NS92VTPro), com três repetições. Os híbridos foram avaliados por meio de análise de variáveis canônicas. Com doses baixas de potássio, a eficácia dos híbridos de milho no controle da lagarta S. frugiperda diminui nos diferentes estádios fenológicos. O uso da tecnologia Bt é mais eficiente quando sob dosagem adequada de potássio de 90 kg ha-¹ KCl. MenosABSTRACT - The objective of this work was to identify the effect of potassium rates on Bt transgenic resistance and damage caused by Spodoptera frugiperda in corn plants at different developmental stages. The experimental design was a randomized complete block in a 3x6 factorial arrangement, with three potassium rates (0, 45, and 90 kg ha-¹) and six corn hybrids (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2, and NS92VTPro), with three replicates. The hybrids were evaluated through the analysis of canonical variables. With low potassium rates, the effectiveness of the corn hybrids in controlling the S. frugiperda caterpillar decreases in the different phenological stages. The use of the Bt technology is more efficient under an adequate potassium rate of 90 kg ha-¹ KCl. RESUMO - O objetivo deste trabalho foi identificar o efeito de doses de potássio sobre a resistência transgênica Bt e os danos causados por Spodoptera frugiperda em plantas de milho, em diferentes estádios de desenvolvimento. O delineamento experimental foi de blocos ao acaso, em arranjo fatorial 3x6, com três doses de potássio (0, 45 e 90 kg ha-¹) e seis híbridos de milho (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2 e NS92VTPro), com três repetições. Os híbridos foram avaliados por meio de análise de variáveis canônicas. Com doses baixas de potássio, a eficácia dos híbridos de milho no controle da lagarta S. frugiperda diminui nos diferentes estádios fenológicos. O uso da tecnologia Bt é mais eficiente quan... Mostrar Tudo |
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Thesagro: |
Alimento Transgênico; Dano; Hibrido; Lagarta; Milho; Potássio; Praga de Planta; Spodoptera Frugiperda; Zea Mays. |
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Thesaurus NAL: |
Plant damage; Plant pests; Potassium; Transgenic plants. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1158015/1/Interrelationship-between-potassium-2023.pdf
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Marc: |
LEADER 02731naa a2200361 a 4500
001 2158015
005 2024-01-25
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1590/S1678-3921.pab2023.v58.03241$2DOI
100 1 $aFARIA, M. M.
245 $aInterrelationship between potassium rates and the efficiency of Bt genes in the control of Spodoptera frugiperda.$h[electronic resource]
260 $c2023
500 $aTítulo em português: Inter-relação entre doses de potássio e a eficiência de genes Bt no controle de Spodoptera frugiperda.
520 $aABSTRACT - The objective of this work was to identify the effect of potassium rates on Bt transgenic resistance and damage caused by Spodoptera frugiperda in corn plants at different developmental stages. The experimental design was a randomized complete block in a 3x6 factorial arrangement, with three potassium rates (0, 45, and 90 kg ha-¹) and six corn hybrids (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2, and NS92VTPro), with three replicates. The hybrids were evaluated through the analysis of canonical variables. With low potassium rates, the effectiveness of the corn hybrids in controlling the S. frugiperda caterpillar decreases in the different phenological stages. The use of the Bt technology is more efficient under an adequate potassium rate of 90 kg ha-¹ KCl. RESUMO - O objetivo deste trabalho foi identificar o efeito de doses de potássio sobre a resistência transgênica Bt e os danos causados por Spodoptera frugiperda em plantas de milho, em diferentes estádios de desenvolvimento. O delineamento experimental foi de blocos ao acaso, em arranjo fatorial 3x6, com três doses de potássio (0, 45 e 90 kg ha-¹) e seis híbridos de milho (20A55Hx, 30A77PW, AG1051, MG652PW, NS90VTPro2 e NS92VTPro), com três repetições. Os híbridos foram avaliados por meio de análise de variáveis canônicas. Com doses baixas de potássio, a eficácia dos híbridos de milho no controle da lagarta S. frugiperda diminui nos diferentes estádios fenológicos. O uso da tecnologia Bt é mais eficiente quando sob dosagem adequada de potássio de 90 kg ha-¹ KCl.
650 $aPlant damage
650 $aPlant pests
650 $aPotassium
650 $aTransgenic plants
650 $aAlimento Transgênico
650 $aDano
650 $aHibrido
650 $aLagarta
650 $aMilho
650 $aPotássio
650 $aPraga de Planta
650 $aSpodoptera Frugiperda
650 $aZea Mays
700 1 $aCINTRA, P. H. N.
700 1 $aAMORIM, V. A.
700 1 $aCAMPOS, T. S.
700 1 $aROCHA, E. C.
700 1 $aRODRIGUES, F.
773 $tPesquisa Agropecuária Brasileira$gv. 58, e03241, 2023.
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