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| Registros recuperados : 14 | |
| 5. |  | HOFFMANN-CAMPO, C.B.; WOBETO, C.; CORSO, I. C. BATISTELA, M.; OLIVEIRA, L. J. Efeito de inseticidas e de epoca de semeadura sobre a populacao e danos de Sternechus subsignatus Boehman a soja. In: REUNIAO DE PESQUISA DE SOJA DA REGIAO CENTRAL DO BRASIL, 22., 2000, Cuiaba. Resumos... Londrina: Embrapa Soja, 2000. p.65-66. (Embrapa Soja. Documentos, 144).| Biblioteca(s): Embrapa Soja. |
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| 6. | | BATISTELA, M.; GRAVENA, S.; BENVENGA, S. R.; SILVA, J. L. da; AMORIM, L. C. S.; ARAÚJO JUNIOR, N. Eficiência de Akito (Betacyfluthrin) no manejo da traça-do-tomateiro, Tuta absoluta (Meyrick) (Lepidoptera: Gelechiidae). In: CONGRESSO BRASILEIRO DE ENTOMOLOGIA, 20., 2004, Gramado. Programa e resumos... Gramado: Sociedade Entomológica do Brasil, 2004. p. 351 Resumo. EN-869.| Biblioteca(s): Embrapa Hortaliças. |
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| 7. | | BENVENGA, S. R.; GRAVENA, S.; SILVA, J. L. da; BATISTELA, M.; AMORIM, L. C. S.; ARAÚJO JUNIOR, N. Modalidades de aplicação do focus (Clothianidin) no manejo de insetos vetores na cultura do tomate. In: CONGRESSO BRASILEIRO DE ENTOMOLOGIA, 20., 2004, Gramado. Programa e resumos... Gramado: Sociedade Entomológica do Brasil, 2004. P. 351 Resumo. EN-867.| Biblioteca(s): Embrapa Hortaliças. |
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| 9. | | BUENO, A. de F.; BATISTELA, M. J.; MOSCARDI, F.; BUENO, R. C. O. de F.; NISHIKAWA, M.; HIDALGO, G.; SILVA, L.; GARCIA, A.; CORBO, E.; SILVA, R. B. Níveis de desfolha tolerados na cultura da soja sem a ocorrência de prejuízos à produtividade. Londrina: Embrapa Soja, 2010. 11 p. il. (Embrapa Soja. Circular Técnica, 79).| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Meio-Norte; Embrapa Rondônia; Embrapa Soja; Embrapa Trigo. |
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| 10. | | BUENO, A. de F.; BATISTELA, M. J.; BUENO, R. C. O. de F.; FRANCA-NETO, J. B.; NISHIKAWA, M. A. N.; LIBÉRIO FILHO, A. Effects of integrated pest management, biological control and prophylactic use os insecticides on the management and sustainability of soybean. Crop Protection, v. 30, n. 7, p. 937-945, jul. 2011.| Biblioteca(s): Embrapa Soja. |
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| 11. | | BATISTELA, M. J.; BUENO, A. de F.; CORBO, E.; HIDALGO, G.; SILVA, L.; NISHIKAWA, M. A. N.; BUENO, R. C. O. de F.; BRITO, R. Efeito de diferentes estratégias de manejo de pragas na produtividade da cultura da soja Glycine max. In: CONGRESSO BRASILEIRO DE ENTOMOLOGIA, 23., 2010, Natal. [Anais...]. Natal: Emparn: Sociedade Brasileira de Entomologia, 2010. Poster 1680.| Biblioteca(s): Embrapa Soja. |
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| 12. | | BATISTELA, M. J.; BUENO, A. de F.; CORBO, E.; HIDALGO, G.; NISHIKAWA, M. A. N.; SILVA, L.; BUENO, R. C. O. de F.; SILVA, R. de B. Efeito da desfolha para a cultura da soja Glycine max. In: CONGRESSO BRASILEIRO DE ENTOMOLOGIA, 23., 2010, Natal. [Anais...]. Natal: Emparn: Sociedade Brasileira de Entomologia, 2010. 1 p. Ref. OR59.| Biblioteca(s): Embrapa Soja. |
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| 13. | | BATISTELA, M. J.; BUENO, A. de F.; NISHIKAWA, M. A. N.; BUENO, R. C. O. de F.; HIDALGO, G.; SILVA, L.; CORBO, E.; SILVA, R. B. Re-evaluation of leaf-lamina consumer thresholds for IPM decisions in short-season soybeans using artificial defoliation. Crop Protection, v. 32, p. 7-11, Feb. 2012.| Biblioteca(s): Embrapa Soja. |
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| 14. | | BUENO, A. F.; BATISTELA, M. J.; MOSCARDI, F.; BUENO, R. C. O. F.; NISHIKAWA, M. A.; HIDALGO, G.; SILVA, L.; GARCIA, A.; CORBO, E.; SILVA, R. B. Quanto tolerar de desfolha na cultura da soja antes de iniciar o controle de pragas? In: REUNIÃO DE PESQUISA DE SOJA DA REGIÃO CENTRAL DO BRASIL, 31., 2010, Brasília, DF. Resumos... Londrina: Embrapa Soja, 2010. p. 71-74. Editores técnicos: Adilson de Oliveira Junior, Odilon Ferreira Saraiva, Regina Maria Villas Bôas de Campo Leite, César de Castro, Jussara Flores de Oliveira Arbues, Wellington Cavalcanti.| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 14 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite; Embrapa Pecuária Sudeste. |
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Data corrente: |
17/12/2013 |
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Data da última atualização: |
15/06/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 2 |
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Autoria: |
McCLURE, M. C.; SONSTEGARD, T. S.; WIGGANS, G. R.; EENENNAAM, A. L. V.; WEBER, K. L.; PENEDO, C. T.; BERRY, D. P.; FLYNN, J.; GARCIA, J. F.; CARMO, A. S.; REGITANO, L. C. de A.; ALBUQUERQUE, M.; SILVA, M. V. G. B.; MACHADO, M. A.; COFFEY, M.; MOORE, K.; BOSCHER, M. Y.; GENESTOUT, L.; MAZZA, R.; TAYLOR, J. F.; SCHNABEL, R. D.; SIMPSON, B.; MARQUES, E.; McEWAN, J. C.; CROMIE, A.; COUTINHO, L. L.; KUEHN, L. A.; KEELE, J. W.; PIPER, E. K.; COOK, J.; WILLIAMS, R.; TASSELL, C. P. V. |
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Afiliação: |
MATTHEW C. McCLURE, USDA; TAD S. SONSTEGARD, USDA; GEORGE R. WIGGANS, USDA; ALISON L. VAN EENENNAAM, University of California - Davis; KRISTINA L. WEBER, University of California-Davis; CECILIA T. PENEDO, University of California-Davis; DONAGH P. BERRY, Animal and Grassland Research and Innovation Centre, Ireland; JOHN FLYNN, Weatherbys DNA Laboratory, Ireland; JOSÉ F. GARCIA, UNESP; ADRIANA S. CARMO, Deoxi Biotecnologia, Araçatuba; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; MILLA ALBUQUERQUE, USP; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; MARCO ANTONIO MACHADO, CNPGL; MIKE COFFEY, SRUC, Scotland; KIRSTY MOORE, SRUC, Scotland; MARIE-YVONNE BOSCHER, LABOGENA, France; LUCIE GENESTOUT, LABOGENA, France; RAFFAELE MAZZA, Italian Breeders Association, Roma; JEREMY F. TAYLOR, University of Missouri-Columbia; ROBERT D. SCHNABEL, University of Missouri-Columbia; BARRY SIMPSON, GeneSeek, Neogen Company, Lincoln, USA; ELISA MARQUES, GeneSeek, Neogen Company, Lincoln, USA; JOHN C. McEWAN, AgResearch, Invermay Agricultural Centre, New Zealand; ANDREW CROMIE, Irish Cattle Breeding Federation, Ireland; LUIZ L. COUTINHO, ESALQ/USP; LARRY A. KUEHN, USDA-ARS; JOHN W. KEELE, USDA-ARS; EMILY K. PIPER, University of Queensland, Australia; JIM COOK, University of New England, Australia; ROBERT WILLIAMS, American-International Charolais Association, USA; CURTIS P. VAN TASSELL, USDA. |
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Título: |
Imputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Frontiers in Genetics, v. 4, n. 176, 2013. |
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Páginas: |
11 p. |
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Idioma: |
Inglês |
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Conteúdo: |
To assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset. MenosTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS ... Mostrar Tudo |
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Palavras-Chave: |
Imputation; Microsatellite; Parentage verification; SNP; STR. |
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Categoria do assunto: |
G Melhoramento Genético |
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Marc: |
LEADER 03360naa a2200565 a 4500
001 2154448
005 2023-06-15
008 2013 bl uuuu u00u1 u #d
100 1 $aMcCLURE, M. C.
245 $aImputation of microsatellite alleles from dense SNP genotypes for parentage verification across multiple Bos taurus and Bos indicus breeds.$h[electronic resource]
260 $c2013
300 $a11 p.
520 $aTo assist cattle producers transition from microsatellite (MS) to single nucleotide polymorphism (SNP) genotyping for parental verification we previously devised an effective and inexpensive method to impute MS alleles from SNP haplotypes. While the reported method was verified with only a limited data set (N = 479) from Brown Swiss, Guernsey, Holstein, and Jersey cattle, some of the MS-SNP haplotype associations were concordant across these phylogenetically diverse breeds. This implied that some haplotypes predate modern breed formation and remain in strong linkage disequilibrium. To expand the utility of MS allele imputation across breeds, MS and SNP data from more than 8000 animals representing 39 breeds (Bos taurus and B. indicus) were used to predict 9410 SNP haplotypes, incorporating an average of 73 SNPs per haplotype, for which alleles from 12 MS markers could be accurately be imputed. Approximately 25% of the MS-SNP haplotypes were present in multiple breeds (N = 2 to 36 breeds). These shared haplotypes allowed for MS imputation in breeds that were not represented in the reference population with only a small increase in Mendelian inheritance inconsistancies. Our reported reference haplotypes can be used for any cattle breed and the reported methods can be applied to any species to aid the transition from MS to SNP genetic markers. While ~91% of the animals with imputed alleles for 12 MS markers had ≤1 Mendelian inheritance conflicts with their parents' reported MS genotypes, this figure was 96% for our reference animals, indicating potential errors in the reported MS genotypes. The workflow we suggest autocorrects for genotyping errors and rare haplotypes, by MS genotyping animals whose imputed MS alleles fail parentage verification, and then incorporating those animals into the reference dataset.
653 $aImputation
653 $aMicrosatellite
653 $aParentage verification
653 $aSNP
653 $aSTR
700 1 $aSONSTEGARD, T. S.
700 1 $aWIGGANS, G. R.
700 1 $aEENENNAAM, A. L. V.
700 1 $aWEBER, K. L.
700 1 $aPENEDO, C. T.
700 1 $aBERRY, D. P.
700 1 $aFLYNN, J.
700 1 $aGARCIA, J. F.
700 1 $aCARMO, A. S.
700 1 $aREGITANO, L. C. de A.
700 1 $aALBUQUERQUE, M.
700 1 $aSILVA, M. V. G. B.
700 1 $aMACHADO, M. A.
700 1 $aCOFFEY, M.
700 1 $aMOORE, K.
700 1 $aBOSCHER, M. Y.
700 1 $aGENESTOUT, L.
700 1 $aMAZZA, R.
700 1 $aTAYLOR, J. F.
700 1 $aSCHNABEL, R. D.
700 1 $aSIMPSON, B.
700 1 $aMARQUES, E.
700 1 $aMcEWAN, J. C.
700 1 $aCROMIE, A.
700 1 $aCOUTINHO, L. L.
700 1 $aKUEHN, L. A.
700 1 $aKEELE, J. W.
700 1 $aPIPER, E. K.
700 1 $aCOOK, J.
700 1 $aWILLIAMS, R.
700 1 $aTASSELL, C. P. V.
773 $tFrontiers in Genetics$gv. 4, n. 176, 2013.
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