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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Agrobiologia; Embrapa Agropecuária Oeste; Embrapa Soja. |
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Data corrente: |
01/08/2014 |
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Data da última atualização: |
11/12/2014 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ZULETA, L. F. G.; CUNHA, C. de O.; CARVALHO, F. M. de; CIAPINA, L. P.; SOUZA, R. C; MERCANTE, F. M.; FARIA, S. M. de; BALDANI, J. I.; STRALIOTTO, R.; HUNGRIA, M.; VASCONCELOS, A. T. R. de. |
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Afiliação: |
FABIO MARTINS MERCANTE, CPAO; SERGIO MIANA DE FARIA, CNPAB; JOSE IVO BALDANI, CNPAB; ROSANGELA STRALIOTTO, CNPAB. |
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Título: |
The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
BMC Genomics, v. 15, n. 1, p. 535, Jun. 2014. |
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DOI: |
10.1186/1471-2164-15-535 |
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Idioma: |
Inglês
Português |
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Conteúdo: |
BACKGROUND: Burkholderia species play an important ecological role related to xenobiosis, the promotion of plant growth, the biocontrol of agricultural diseases, and symbiotic and non-symbiotic biological nitrogen fixation. Here, we highlight our study as providing the first complete genome of a symbiotic strain of B. phenoliruptrix, BR3459a (=CLA1), which was originally isolated in Brazil from nodules of Mimosa flocculosa and is effective in fixing nitrogen in association with this leguminous species. RESULTS: Genomic comparisons with other pathogenic and non-pathogenic Burkholderia strains grouped B. phenoliruptrix BR3459a with plant-associated beneficial and environmental species, although it shares a high percentage of its gene repertoire with species of the B. cepacia complex (Bcc) and "pseudomallei" group. The genomic analyses showed that the bce genes involved in exopolysaccharide production are clustered together in the same genomic region, constituting part of the Group III cluster of non-pathogenic bacteria. Regarding environmental stresses, we highlight genes that might be relevant in responses to osmotic, heat, cold and general stresses. Furthermore, a number of particularly interesting genes involved in the machinery of the T1SS, T2SS, T3SS, T4ASS and T6SS secretion systems were identified. The xenobiotic properties of strain BR3459a were also investigated, and some enzymes involved in the degradation of styrene, nitrotoluene, dioxin, chlorocyclohexane, chlorobenzene and caprolactam were identified. The genomic analyses also revealed a large number of antibiotic-related genes, the most important of which were correlated with streptomycin and novobiocin. The symbiotic plasmid showed high sequence identity with the symbiotic plasmid of B. phymatum. Additionally, comparative analysis of 545 housekeeping genes among pathogenic and non-pathogenic Burkholderia species strongly supports the definition of a new genus for the second branch, which would include BR3459a. CONCLUSIONS: The analyses of B. phenoliruptrix BR3459a showed key property of fixing nitrogen that together with genes for high tolerance to environmental stresses might explain a successful strategy of symbiosis in the tropics. The strain also harbours interesting sets of genes with biotechnological potential. However, the resemblance of certain genes to those of pathogenic Burkholderia raise concerns about large-scale applications in agriculture or for bioremediation. MenosBACKGROUND: Burkholderia species play an important ecological role related to xenobiosis, the promotion of plant growth, the biocontrol of agricultural diseases, and symbiotic and non-symbiotic biological nitrogen fixation. Here, we highlight our study as providing the first complete genome of a symbiotic strain of B. phenoliruptrix, BR3459a (=CLA1), which was originally isolated in Brazil from nodules of Mimosa flocculosa and is effective in fixing nitrogen in association with this leguminous species. RESULTS: Genomic comparisons with other pathogenic and non-pathogenic Burkholderia strains grouped B. phenoliruptrix BR3459a with plant-associated beneficial and environmental species, although it shares a high percentage of its gene repertoire with species of the B. cepacia complex (Bcc) and "pseudomallei" group. The genomic analyses showed that the bce genes involved in exopolysaccharide production are clustered together in the same genomic region, constituting part of the Group III cluster of non-pathogenic bacteria. Regarding environmental stresses, we highlight genes that might be relevant in responses to osmotic, heat, cold and general stresses. Furthermore, a number of particularly interesting genes involved in the machinery of the T1SS, T2SS, T3SS, T4ASS and T6SS secretion systems were identified. The xenobiotic properties of strain BR3459a were also investigated, and some enzymes involved in the degradation of styrene, nitrotoluene, dioxin, chlorocyclohexane, chlorobe... Mostrar Tudo |
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Palavras-Chave: |
Comparative genomics; FBN; Genômica; Nitrogen fixing; Pathogenic Bacteria. |
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Thesagro: |
Fixação de Nitrogênio. |
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Thesaurus Nal: |
Nitrogen fixation. |
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Categoria do assunto: |
--
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 03533naa a2200337 a 4500
001 2001867
005 2014-12-11
008 2014 bl uuuu u00u1 u #d
024 7 $a10.1186/1471-2164-15-535$2DOI
100 1 $aZULETA, L. F. G.
245 $aThe complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa$bhighlighting the coexistence of symbiotic and pathogenic genes.$h[electronic resource]
260 $c2014
520 $aBACKGROUND: Burkholderia species play an important ecological role related to xenobiosis, the promotion of plant growth, the biocontrol of agricultural diseases, and symbiotic and non-symbiotic biological nitrogen fixation. Here, we highlight our study as providing the first complete genome of a symbiotic strain of B. phenoliruptrix, BR3459a (=CLA1), which was originally isolated in Brazil from nodules of Mimosa flocculosa and is effective in fixing nitrogen in association with this leguminous species. RESULTS: Genomic comparisons with other pathogenic and non-pathogenic Burkholderia strains grouped B. phenoliruptrix BR3459a with plant-associated beneficial and environmental species, although it shares a high percentage of its gene repertoire with species of the B. cepacia complex (Bcc) and "pseudomallei" group. The genomic analyses showed that the bce genes involved in exopolysaccharide production are clustered together in the same genomic region, constituting part of the Group III cluster of non-pathogenic bacteria. Regarding environmental stresses, we highlight genes that might be relevant in responses to osmotic, heat, cold and general stresses. Furthermore, a number of particularly interesting genes involved in the machinery of the T1SS, T2SS, T3SS, T4ASS and T6SS secretion systems were identified. The xenobiotic properties of strain BR3459a were also investigated, and some enzymes involved in the degradation of styrene, nitrotoluene, dioxin, chlorocyclohexane, chlorobenzene and caprolactam were identified. The genomic analyses also revealed a large number of antibiotic-related genes, the most important of which were correlated with streptomycin and novobiocin. The symbiotic plasmid showed high sequence identity with the symbiotic plasmid of B. phymatum. Additionally, comparative analysis of 545 housekeeping genes among pathogenic and non-pathogenic Burkholderia species strongly supports the definition of a new genus for the second branch, which would include BR3459a. CONCLUSIONS: The analyses of B. phenoliruptrix BR3459a showed key property of fixing nitrogen that together with genes for high tolerance to environmental stresses might explain a successful strategy of symbiosis in the tropics. The strain also harbours interesting sets of genes with biotechnological potential. However, the resemblance of certain genes to those of pathogenic Burkholderia raise concerns about large-scale applications in agriculture or for bioremediation.
650 $aNitrogen fixation
650 $aFixação de Nitrogênio
653 $aComparative genomics
653 $aFBN
653 $aGenômica
653 $aNitrogen fixing
653 $aPathogenic Bacteria
700 1 $aCUNHA, C. de O.
700 1 $aCARVALHO, F. M. de
700 1 $aCIAPINA, L. P.
700 1 $aSOUZA, R. C
700 1 $aMERCANTE, F. M.
700 1 $aFARIA, S. M. de
700 1 $aBALDANI, J. I.
700 1 $aSTRALIOTTO, R.
700 1 $aHUNGRIA, M.
700 1 $aVASCONCELOS, A. T. R. de
773 $tBMC Genomics$gv. 15, n. 1, p. 535, Jun. 2014.
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Registro original: |
Embrapa Agropecuária Oeste (CPAO) |
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| Registros recuperados : 34 | |
| 2. |  | CAMPOS, G. S.; MULIM, H.; VENTURA, H.; SOUZA, N. O.; CARDOSO, F. F.; OLIVEIRA, H. R. Detection of polygenic selection using generation proxy selection mapping in Nellore cattle. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 58., 2024, Cuiabá. Zootecnia para segurança alimentar e sustentabilidade climática: anais. Brasília, DF: SBZ; Cuiabá: Universidade Federal de Mato Grosso, 2024.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Pecuária Sul. |
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| 4. | | OLIVEIRA, L. T. de; MENEZES, G. R. de O.; SILVA, F. F. e; OLIVEIRA, H. R. de; VENTURA, H. T. Modelos de limiar em regressão aleatória para avaliação genética da probabilidade de prenhez na raça Sindi. In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 12., 2017, Ribeirão Preto, SP. Fenômica e outras ômicas na produção animal: Anais... Sertãozinho: Sociedade de Melhoramento Animal/Instituto de Zootecnia, 2017.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
|  |
| 5. | | SILVA, D. A. da; SILVA, F. F. e; VENTURA, H. T.; JUNQUEIRA, V. S.; SILVA, A. A. da; MOTA, R. R.; LOPES, P. S. Contemporary groups in the genetic evaluation of Nellore cattle using Bayesian inference. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 52, n. 8, p. 643-651, fev. 2017. Título em português: Grupos de contemporâneos na avaliação genética de gado Nelore por inferência bayesiana.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 6. | | BRITO, l. C.; LOPES, P. S.; SILVA, F. F.; LÁZARO, S. F.; VENTURA, H. T.; BRUNELI, F. A. T.; VICENTINI, R. R.; PEIXOTO, M. G. C. D. Multi-trait analysis for beef and dairy traits in dual purpose Guzerá herds in tropical conditions. In: REUNIÓN DE LA ASSOCIÓN LATINOAMERICANA DE PRODUCCIÓN ANIMAL, 25, 2016, Recife. Anais... [S,l.]: Associación Latinoamericana de Producción Animal, 2016. 1| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 7. | | COSTA, E. V.; VENTURA. H. T.; FIGUEIREDO, E. A. P. de; SILVA, F. F.; GLÓRIA, L. S.; GODINHO, R. M.; RESENDE, M. D. V. de; LOPES, P. S. Multi-trait and repeatability models for genetic evaluation of litter traits in pigs considering different farrowings. Revista Brasileira de Saúde e Produção Animal, Salvador, v. 17, n. 4, p. 666-676, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 2 |
| Biblioteca(s): Embrapa Florestas; Embrapa Suínos e Aves. |
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| 8. | | VENTURA, H. T.; SILVA, F. F e; VARONA, L.; FIGUEIREDO, E. A. P. de; COSTA, E. V.; SILVA, L. P. da; VENTURA. R.; LOPES, P. S. Comparing multi-trait Poisson and Gaussian Bayesian models for genetic evaluation of litter traits in pigs. Livestock Science, v. 176, p. 47-53, 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 9. | | PEIXOTO, M. G. C. D.; CANDA, R. A.; BRUNELI, F. A. T.; SANTOS, G. G. dos; VENTURA, H. T.; LOPES, P. S. Correlation between PTA for milk and beef traits of Guzerá animals from dual-purpose herds in Brazil. In: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver. Proceedings... Champaign: ASAS, 2014. 3 p.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 10. | | BRITO, L. C.; CASELLAS, J.; VARONA, L; LOPES, P. S.; VENTURA, H. T.; PEIXOTO, M. G. C. D.; LÁZARO, S. F.; SILVA, F. F. Genetic evaluation of age at first calving for Guzerá beef cattle using linear, threshold, and survival Bayesian models. Journal of Animal Science, v. 96, n. 7, p. 2517-2524, 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 11. | | BRITO, L. C.; PEIXOTO, M. G. C. D.; CARRARA, E. R.; SILVA, F. F. e; VENTURA, H. T.; BRUNELI, F. A. T.; LOPES, P. S. Genetic parameters for milk, growth, and reproductive traits in Guzerá cattle under tropical conditions. Tropical Animal Health and Production, v. 52, p. 2251-2257, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 12. | | SILVA, D. O.; AYRES, D. R.; BIGNARDI, A. B.; SANTANA JÚNIOR, M. L.; PEIXOTO, M. G. C. D.; BRUNELI, F. A. T.; VENTURA, H. T.; PEREIRA, R. J. Interação genótipo x ambiente para características de desempenho ao sobreano para a raça Guzerá In: SIMPÓSIO BRASILEIRO DE MELHORAMENTO ANIMAL, 15., 2023, Jataí. O reinado dos fenótipos: novos desafios: anais. Jataí: Sociedade Brasileira de Melhoramento Animal, 2023. p. 129-131.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 13. | | OLIVEIRA, L. T. de; BONAFÉ, C. M.; SIVA, F. F. e; VENTURA, H. T.; OLIVEIRA, H. R. de; MENEZES, G. R. de O.; RESENDE, M. D. V. de; VIANA, J. M. S. Bayesian random regression threshold models for genetic evaluation of pregnancy probability in Red Sindhi heifers. Livestock Science, v. 202, p. 166-170, August, 2017. Short communication| Tipo: Nota Técnica/Nota Científica |
| Biblioteca(s): Embrapa Florestas; Embrapa Gado de Corte. |
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| 14. | | PANETTO, J. C. do C.; SILVA, M. V. G. B.; VERNEQUE, R. da S.; MACHADO, M. A.; FERNANDES, A. R.; MARTINS, M. F.; REIS, D. R. de L.; VENTURA, H. T.; PEREIRA, M. A. Programa Nacional de Melhoramento do Gir Leiteiro - Sumário Brasileiro de Fêmeas -1ª Avaliação Genômica de Fêmeas Jovens e Adultas - Agosto 2018. Juiz de Fora: Embrapa Gado de Leite, 2018. 31 p. (Embrapa Gado de Leite. Documentos, 231).| Biblioteca(s): Embrapa Gado de Leite; Embrapa Unidades Centrais. |
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| 15. | | CARRARA, E. R.; PEIXOTO, M. G. C. D.; SILVA, A. A. da; BRUNELI, F. A. T.; VENTURA, H. T.; ZADRA, L. E. F.; JOSAHKIAN, L. A.; VERONEZE, R.; LOPES, P. S. Genomic prediction in Brazilian Guzerá cattle: application of a single-step approach to productive and reproductive traits. Tropical Animal Health and Production, v. 55, article 48, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 16. | | ROUWS, L. F. M.; MENESES, C. H. G.; GALVÃO, P. G.; VENTURA, H, G.; DRECHSEL, M. M.; SILVA, R. J.; VIDAL, M. S.; SIMÕES-ARAUJO, J. L.; TEIXEIRA, K. R. S.; SCHWAB, S.; BALDANI, J. I. Functional analysis of Gluconacetobacter diazotrophicus PAL5 genes involved in the nitogen fixation process and interaction with the plant. INTERNATIONAL INCT SYMPOSIUM ON BIOLOGICAL NITROGEN FIXATION, 1., 2009, Curitiba. Program and index... Brasilia: INCT, 2009. 01p| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 17. | | ROUWS, L. F. M.; MENESSES, C. H. G.; GALVÃO, P. G.; VENTURA, H. G.; DRECHSEL, M. M.; SILVA, R. J.; VIDAL, M. S.; SIMÕES-ARAUJO, J. L.; TEIXEIRA, K. R. S.; SCHWAB, S.; BALDANI, J. I. Functional analysis of Gluconacetobacter diazotrophicus PAL5 genes involved in the nitrogen fixation processs and interaction with the plant. INTERNATIONAL INCT SYMPOSIUM ON BIOLOGICAL NITROGEN FIXATION, 1., 2009, Curitiba. Program and index... Brasilia: INCT, 2009. 01p| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 18. | | CARRARA, E. R.; PEIXOTO, M. G. C. D.; VERONEZE, R.; SILVA, F. F. e; RAMOS, P. V. B.; BRUNELI, F. A. T.; ZADRA, L. E. F.; VENTURA, H. T.; JOSAHKIAN, L. A.; LOPES, P. S. Genetic study of quantitative traits supports the use of Guzerá as dual-purpose cattle. Animal Bioscience, v. 35, n. 7, p. 955-963, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 5 |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 19. | | NORONHA, M. de A.; LOPES, C. L. R. B. P.; OLIVEIRA, B. M. M. de; VENTURA, H. P.; TÔRRES, R. J. A.; MICHEREFF, S. J.; SILVA, K. J. D. e. Reação de genótipos de feijão-caupi a Fusarium oxysporum f. sp. tracheiphilum, Rhizoctonia solani e Sclerotium rolfsii. In: CONGRESSO NACIONAL DE FEIJÃO-CAUPI, 3., 2013, Recife. Feijão-Caupi como alternativa sustentável para os sistemas produtivos familiares e empresariais. Recife: IPA, 2013. CONAC 2012. Disponível em: http://www.conac2012.org/resumos/pdf/056a.pdf. Acesso em: 03 jul. 2013.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 20. | | NORONHA, M. de A.; LOPES, C. L. R. B. P.; OLIVEIRA, B. M. M. de; VENTURA, H. P.; TÔRRES, R. J. A.; MICHEREFF, S. J.; SILVA, K. J. D. e. Reação de genótipos de feijão-caupi a Fusarium oxysporum f. sp. tracheiphilum, Rhizoctonia solani e Sclerotium rolfsii. In: CONGRESSO NACIONAL DE FEIJÃO-CAUPI, 3., 2013, Recife. Feijão-Caupi como alternativa sustentável para os sistemas produtivos familiares e empresariais. Recife: IPA, 2013. p. 1-5.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
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| Registros recuperados : 34 | |
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