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 | Acesso ao texto completo restrito à biblioteca da Embrapa Agricultura Digital. Para informações adicionais entre em contato com cnptia.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
25/04/2006 |
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Data da última atualização: |
17/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
SIMÕES, M.; BAHIA, D.; TORRES, K.; ZERLOTINI NETO, A.; ARTIGUENAVE, F.; FALCAO, P. R. K.; NESHICH, G.; OLIVEIRA, G. |
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Afiliação: |
MARIANA SIMÕES, Fiocruz; DIANA BAHIA, Fiocruz; KLEIDER TORRES, Fiocruz; ADHEMAR ZERLOTINI NETO, CNPTIA; FRANÇOIS ARTIGUENAVE, Fiocruz; PAULA REGINA KUSER FALCAO, CNPTIA; GORAN NESIC, CNPTIA; GUILHERME OLIVEIRA, Fiocruz. |
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Título: |
SNP identification in Schistosoma mansoni expressed genes. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
In: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional, 2005. |
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Páginas: |
p. 131. |
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Idioma: |
Inglês |
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Notas: |
X-meeting 2005. Presented Posters. Na publicação: Paula Kuser. |
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Conteúdo: |
Schistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorphisms was conducted and SNPs in the cathepsin B gene, among others, were identified. The quality of the DNA sequences and individual SNPs were assessed by visual inspection with reference to chromatograms. Sixteen SNPs were identified, 44% were transitions and 56% transversions, 62% synonym mutations and 38% non-synonym mutations. The majority of the polymorphisms were in the third codon base. We are now pursuing the characterization of the possible effect of the polymorphisms in the structure of the cathepsin B protein. MenosSchistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorph... Mostrar Tudo |
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Palavras-Chave: |
Bioinformática; Polimorfismo de nucleotídeo único. |
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Thesagro: |
Schistosoma mansoni. |
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Thesaurus Nal: |
Bioinformatics; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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Marc: |
LEADER 02990nam a2200277 a 4500
001 1009287
005 2020-01-17
008 2005 bl uuuu u00u1 u #d
100 1 $aSIMÕES, M.
245 $aSNP identification in Schistosoma mansoni expressed genes.$h[electronic resource]
260 $aIn: X-MEETING; INTERNATIONAL CONFERENCE OF THE AB3C, 1., 2005, Caxambu. [Proceedings...]. [S.l.]: Associação Brasileira de Bioinformática e Biologia Computacional$c2005
300 $ap. 131.
500 $aX-meeting 2005. Presented Posters. Na publicação: Paula Kuser.
520 $aSchistosomes are parasitic platyhelminths that cause a chronic. often debilitating disease afflicting over 200 million people worldwide. The study of genetic polymorphisms in Schistosomes is important for vaccine and drug development, in addition to the understanding of the genetic structure of populations. Single nucleotide polymorphisms (SNPs) are the most frequent form of DNA variation, they are abundant and have low mutation rates. SNPs are thought to be the next generation of genetic markers that can be used in many of important biological, genetic, pharmacological and medical applications (Thiel et al, 2004). The aim of this project is to identify in silico SNPs (Useche et al, 2001) in ESTs of Schistosoma mansoni, verify their presence in vaccine and drug target candidates and validate putative SNPs using the cathepsin B gene as a model. The S mansoni cathepin B is a proteolytic enzyme that has been evaluated for development of vaccines and new drugs. It is expressed in the parasite gut and it is believed to function in the digestion of haemoglobin, the main nutrient source for the parasite (Sajid and McKerrow, 2002.) The source of ESTs were 61.002 ESTs generated by Minas Gerais Genome Network, all with quality files base called by Phred (Ewing and Green et al, 2004). The sequences were clustered using Phrap, followed by the identification of putative SNPs applying a novel detection algorithm written by our group, cSNPer. A pre-selection of candidate sequence polymorphisms was conducted and SNPs in the cathepsin B gene, among others, were identified. The quality of the DNA sequences and individual SNPs were assessed by visual inspection with reference to chromatograms. Sixteen SNPs were identified, 44% were transitions and 56% transversions, 62% synonym mutations and 38% non-synonym mutations. The majority of the polymorphisms were in the third codon base. We are now pursuing the characterization of the possible effect of the polymorphisms in the structure of the cathepsin B protein.
650 $aBioinformatics
650 $aSingle nucleotide polymorphism
650 $aSchistosoma mansoni
653 $aBioinformática
653 $aPolimorfismo de nucleotídeo único
700 1 $aBAHIA, D.
700 1 $aTORRES, K.
700 1 $aZERLOTINI NETO, A.
700 1 $aARTIGUENAVE, F.
700 1 $aFALCAO, P. R. K.
700 1 $aNESHICH, G.
700 1 $aOLIVEIRA, G.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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| Registros recuperados : 5 | |
| 1. |  | FERREIRA, J. A.; FACCO, J. F.; RIZZETTI, T. M.; PRESTES, O. D.; ZANELLA, R.; TALAMINI, V.; FERREIRA, J. M. S.; BOTTOLI, C. B. G. Avaliação da água de coco e albúmen sólido na determinação de agrotóxicos por QuEChERS UHPLCMS/MS. In: SIMPÓSIO BRASILEIRO DE CROMATOGRAFIA E TÉCNICAS AFINS - SIMCRO, 2014, Campos do Jordão. Livro de resumos... Campos de Jordão, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
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| 2. | | FERREIRA, J. A.; FERREIRA, J. M. S.; TALAMINI, V.; FACCO, J. de F.; RIZZETTI, T. M.; PRESTES, O. D.; ADAIME, M. B; ZANELLA, R.; BOTTOLI, C. B. G. Determination of pesticides in coconut (Cocos nucifera Linn.) water and pulp using modified QuEChERS and LC-MS/MS. Food Chemistry, London, GB, 2013, p. 616-624, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
|  |
| 3. | | BARANZELLI, J.; SOMACAL, S.; MONTEIRO, C. S.; MELLO, R. de O.; RODRIGUES, E.; PRESTES, O. D.; LÓPEZ-RUIZ, R.; FRENICH, A. G.; ROMERO-GONZÁLEZ, R.; MIRANDA, M. Z. de; EMANUELLI, T. Grain germination changes the profile of phenolic compounds and benzoxazinoids in wheat: a study on hard and soft cultivars. Molecules, v. 28, n. 2, 721, p. 1-19, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Trigo. |
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| 4. | | FERREIRA, J. A.; TALAMINI, V.; FACCO, J. F.; RIZZETTI, T. M.; FERREIRA, J. M. S.; OLIVEIRA, F. A.; PRESTES, O. D.; ZANELLA, R.; MARTINS, M. L.; ADAIME, M. B.; NAVICKIENE, S.; BOTTOLI, C. B. G. Determination of pesticide residues in coconut tree trunks by modified QuEChERS method and ultra-high-performance liquid chromatography coupled to triple quadrupole tandem mass spectrometry. Analytical Methods, Cambridge, UK, Abr. 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
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| 5. | | FERREIRA, J. A.; FACCO, J. de F.; RIZZETTI, T. M.; PRESTES, O. D.; ZANELLA, R.; ADAIME, M. B.; TALAMINI, V.; FERREIRA, J. M. S.; NAVICKIENE, S.; BOTTOLI, C. B. G. Using a modified QuEChERS method and UHPLC-MS/MS for the determination of pesticides applied by endotherapy to coconut (Cocosnucifera L.) tree trunks. In: INTERNATIONA SYMPOSIUM ON ELECTRO AND LIQUID PHASE-SEPARATION TECNIQUES, 21.; LATIN-AMERICAN SYMPOSIUM ON BIOTECHNOLOGY, BIOMEDICAL, BIOPHARMACEUTICAL AND INDUSTRIAL APPLICATIONS OF CAPILLARY ELECTROPHORESIS AND MICROCHIP TECHNOLOGY, 20., Boock of abstracts... Natal: ITP; LACE, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Tabuleiros Costeiros. |
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| Registros recuperados : 5 | |
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