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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
08/02/2024 |
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Data da última atualização: |
08/02/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ZHANG, S.; YANG, C.; QIU, Y.; LIAO, R.; XUAN, Z.; REN, F.; DONG, Y.; WU, D.; GONZÁLEZ, P. L. R. G.; ASTUA, J. de F.; YANG, H.; ZHOU, C.; CAO, M. |
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Afiliação: |
SONG ZHANG, SOUTHWEST UNIVERSITY; CAIXIA YANG, SHENYANG UNIVERSITY; YUANJIAN QIU, SOUTHWEST UNIVERSITY; RUILING LIAO, SOUTHWEST UNIVERSITY; ZHIYOU XUAN, SOUTHWEST UNIVERSITY; FANG REN, RESEARCH INSTITUTE OF POMOLOGY; YAFENG DONG, RESEARCH INSTITUTE OF POMOLOGY; DI WU, SOUTHWEST UNIVERSITY; PEDRO LUIS RAMOS-GONZÁLEZ, INSTITUTO BIOLÓGICO; JULIANA DE FREITAS ASTUA, CNPMF; HUADONG YANG, HUNAN AGRICULTURAL UNIVERSITY; CHANGYONG ZHOU, SOUTHWEST UNIVERSITY; MENGJI CAO, SOUTHWEST UNIVERSITY. |
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Título: |
Conserved untranslated regions of multipartite viruses: Natural markers of novel viral genomic components and tags of viral evolution. |
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Ano de publicação: |
2024 |
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Fonte/Imprenta: |
Virus Evolution, v. 10, n. 1, p. 1-19, 2024. |
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DOI: |
https://doi.org/10.1093/ve/veae004 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: Viruses with split genomes are classified as being either segmented or multipartite based on whether their genomic segments occur within a single virion or across different virions. Despite variations in number and sequence during evolution, the genomic segments of many viruses are conserved within the untranslated regions (UTRs). In this study, we present a methodology that combines RNA sequencing with iterative BLASTn of UTRs (https://github.com/qq371260/Iterative-blast-v.1.0) to identify new viral genomic segments. Some novel multipartite-like viruses related to the phylum Kitrinoviricota were annotated using sequencing data from field plant samples and public databases. We identified potentially plant-infecting jingmen-related viruses (order Amarillovirales) and jivi-related viruses (order Martellivirales) with at least six genomic components. The number of RNA molecules associated with a genome of the novel viruses in the families Closteroviridae, Kitaviridae, and Virgaviridae within the order Martellivirales reached five. Several of these viruses seem to represent new taxa at the subgenus, genus, and family levels. The diversity of novel genomic components and the multiple duplication of proteins or protein domains within single or multiple genomic components emphasize the evolutionary roles of genetic recombination (horizontal gene transfer), reassortment, and deletion. The relatively conserved UTRs at the genome level might explain the relationships between monopartite and multipartite viruses, as well as how subviral agents such as defective RNAs and satellite viruses can coexist with their helper viruses. MenosAbstract: Viruses with split genomes are classified as being either segmented or multipartite based on whether their genomic segments occur within a single virion or across different virions. Despite variations in number and sequence during evolution, the genomic segments of many viruses are conserved within the untranslated regions (UTRs). In this study, we present a methodology that combines RNA sequencing with iterative BLASTn of UTRs (https://github.com/qq371260/Iterative-blast-v.1.0) to identify new viral genomic segments. Some novel multipartite-like viruses related to the phylum Kitrinoviricota were annotated using sequencing data from field plant samples and public databases. We identified potentially plant-infecting jingmen-related viruses (order Amarillovirales) and jivi-related viruses (order Martellivirales) with at least six genomic components. The number of RNA molecules associated with a genome of the novel viruses in the families Closteroviridae, Kitaviridae, and Virgaviridae within the order Martellivirales reached five. Several of these viruses seem to represent new taxa at the subgenus, genus, and family levels. The diversity of novel genomic components and the multiple duplication of proteins or protein domains within single or multiple genomic components emphasize the evolutionary roles of genetic recombination (horizontal gene transfer), reassortment, and deletion. The relatively conserved UTRs at the genome level might explain the relationships between... Mostrar Tudo |
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Palavras-Chave: |
Multipartite viruses; Phylogenetics; Untranslated regions; Virus evolution. |
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Thesagro: |
Vírus. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02604naa a2200337 a 4500
001 2161831
005 2024-02-08
008 2024 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1093/ve/veae004$2DOI
100 1 $aZHANG, S.
245 $aConserved untranslated regions of multipartite viruses$bNatural markers of novel viral genomic components and tags of viral evolution.$h[electronic resource]
260 $c2024
520 $aAbstract: Viruses with split genomes are classified as being either segmented or multipartite based on whether their genomic segments occur within a single virion or across different virions. Despite variations in number and sequence during evolution, the genomic segments of many viruses are conserved within the untranslated regions (UTRs). In this study, we present a methodology that combines RNA sequencing with iterative BLASTn of UTRs (https://github.com/qq371260/Iterative-blast-v.1.0) to identify new viral genomic segments. Some novel multipartite-like viruses related to the phylum Kitrinoviricota were annotated using sequencing data from field plant samples and public databases. We identified potentially plant-infecting jingmen-related viruses (order Amarillovirales) and jivi-related viruses (order Martellivirales) with at least six genomic components. The number of RNA molecules associated with a genome of the novel viruses in the families Closteroviridae, Kitaviridae, and Virgaviridae within the order Martellivirales reached five. Several of these viruses seem to represent new taxa at the subgenus, genus, and family levels. The diversity of novel genomic components and the multiple duplication of proteins or protein domains within single or multiple genomic components emphasize the evolutionary roles of genetic recombination (horizontal gene transfer), reassortment, and deletion. The relatively conserved UTRs at the genome level might explain the relationships between monopartite and multipartite viruses, as well as how subviral agents such as defective RNAs and satellite viruses can coexist with their helper viruses.
650 $aVírus
653 $aMultipartite viruses
653 $aPhylogenetics
653 $aUntranslated regions
653 $aVirus evolution
700 1 $aYANG, C.
700 1 $aQIU, Y.
700 1 $aLIAO, R.
700 1 $aXUAN, Z.
700 1 $aREN, F.
700 1 $aDONG, Y.
700 1 $aWU, D.
700 1 $aGONZÁLEZ, P. L. R. G.
700 1 $aASTUA, J. de F.
700 1 $aYANG, H.
700 1 $aZHOU, C.
700 1 $aCAO, M.
773 $tVirus Evolution$gv. 10, n. 1, p. 1-19, 2024.
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Embrapa Mandioca e Fruticultura (CNPMF) |
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| Registros recuperados : 10 | |
| 2. |  | LEAL, A. C.; RAMOS, A. L. M. Introducao e avaliacao preliminar de especies florestais de uso multiplo no Norte do Parana. In: CONGRESSO BRASILEIRO SOBRE SISTEMAS AGROFLORESTAIS, 1., ENCONTRO SOBRE SISTEMAS AGROFLORESTAIS NOS PAÍSES DO MERCOSUL, 1., 1994, Porto Velho. Anais. Colombo: EMBRAPA-CNPF, 1994. v. 2, p. 229-232. (EMBRAPA-CNPF. Documentos, 27).| Biblioteca(s): Embrapa Florestas. |
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| 3. | | PEREIRA, J. de P.; ANDROCIOLI FILHO, A.; LEAL, A. C.; RAMOS, A. L. M. Consorciacao de seringueira e cafeeiro em fase terminal e o seu efeito na reducao do periodo de imaturidade do seringal. In: CONGRESSO BRASILEIRO SOBRE SISTEMAS AGROFLORESTAIS, 1.; ENCONTRO SOBRE SISTEMAS AGROFLORESTAIS NOS PAÍSES DO MERCOSUL, 1., 1994, Porto Velho. Anais. Colombo: EMBRAPA-CNPF, 1994. v. 2, p. 103-112. (EMBRAPA-CNPF. Documentos, 27).| Biblioteca(s): Embrapa Florestas. |
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| 4. | | PEREIRA, J. da P.; LEAL, A. C.; RAMOS, A. L. M. Perspectivas da heveicultura no Noroeste do Estado do Parana. In: CONGRESSO BRASILEIRO SOBRE SISTEMAS AGROFLORESTAIS, 1.; ENCONTRO SOBRE SISTEMAS AGROFLORESTAIS NOS PAÍSES DO MERCOSUL, 1., 1994, Porto Velho. Anais. Colombo: EMBRAPA-CNPF, 1994. v. 2, p. 253-254. (EMBRAPA-CNPF. Documentos, 27).| Biblioteca(s): Embrapa Florestas. |
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| 8. | | CARAMONI, P. H.; LEAL, A. C.; MORAIS, H.; HUGO, R. G.; KATHOUNIAN, C. A.; GRODZKI, L.; SILVA, V. P. da. Indicadores biofísicos de sistemas agroflorestais. In: MONTOYA VILCAHUAMAN, L. J.; RIBASKI, J.; MACHADO, A. M. B. (Ed.). Sistemas agroflorestais e desenvolvimento com proteção ambiental: perspectivas, análises e tendências. Colombo: Embrapa Florestas, 2006. p. 115-128.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Florestas. |
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| 9. | | CARAMORI, P. H.; LEAL, A. C.; MORAIS, H.; HUGO, R. G.; KATHOUNIAN. A.; GRODZKI, L.; PORFIRIO-DA-SILVA, V. Indicadores biofísicos de sistemas agroflorestais. In: CONGRESSO BRASILEIRO DE SISTEMAS AGROFLORESTAIS, 5., 2004, Curitiba. SAFs: desenvolvimento com proteção ambiental. Colombo: Embrapa Florestas, 2004. Embrapa Florestas. Documentos, 98). Palestra.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Florestas. |
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| 10. | | NAGASHIMA, R. K.; CARDOSO, H. C.; LEAL, A. C. T.; MONTEIRO, E. A. B.; BARROS, M. de L. C.; FELIZZOLA, J. F.; NEU, V. Avaliação dos parâmetros físico-químicos e biológicos da água da chuva em uma ilha no estuário do Rio Pará. In: SIMPÓSIO BRASILEIRO DE RECURSOS HÍDRICOS, 25., 2023, Aracaju. Anais [...]. Porto Alegre: Associação Brasileira de Recursos Hídricos, 2023.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Amazônia Oriental. |
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| Registros recuperados : 10 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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