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Registro Completo |
Biblioteca(s): |
Embrapa Suínos e Aves. |
Data corrente: |
01/11/2019 |
Data da última atualização: |
01/11/2019 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
HAACH, V.; GAVA, D.; CANTAO, M. E.; FRANCO, A. C. |
Afiliação: |
VANESSA HAACH, UFRGS; DANIELLE GAVA, CNPSA; MAURICIO EGIDIO CANTAO, CNPSA; ANA CLÁUDIA FRANCO, UFRGS. |
Título: |
One-step multiplex RT-qPCR for the detection and subtyping of influenza A virus in swine in Brazil. |
Ano de publicação: |
2019 |
Fonte/Imprenta: |
Journal of Virological Methods, v. 269, p. 43-48, 2019. |
DOI: |
10.1016/j.jviromet.2019.04.005 |
Idioma: |
Inglês |
Conteúdo: |
Abstract: Pandemic H1N1, human-like H1N2 and H3N2 influenza A (IAV) viruses are co-circulating in swine herds in Brazil. The genetic analysis of the Brazilian IAVs has shown that they are genetically distinct from viruses found in swine in other countries; therefore, an update of the diagnostic assays for IAV detection and subtyping is needed. This study describes the development and validation of a TaqMan based ? one-step multiplex RT-qPCR to discriminate the hemagglutinin and neuraminidase genes of the three major IAV ubtypes circulating in pigs in Brazil. The RT-qPCR assays presented 100% (95.7?100, CI 95%) of diagnostic sensitivity in the analysis of 85 IAVs, previously characterized by sequencing. The limits of detection ranged from 5.09 × 101 to 5.09 × 103 viral RNA copies/μL. For the analytical specificity, 73 pig samples collected during 2017 and 2018 were analyzed, resulting in the identification of the subtype in 74.0% (62.9?82.7, CI 95%) of samples. From these, 46.3% were H3N2, 33.3% were H1N1, 11.1% were H1N2 and 3.7% were HxN1. Mixed viral infections (3.7%) and reassortant viruses (1.9%) were also detected by the test. This multiplex RT-qPCR assay provides a fast and specific diagnostic tool for identification of different subtypes and lineages of IAV in pigs, contributing to the monitoring of influenza in swine. |
Palavras-Chave: |
Diagnóstico rápido; Multiplex RT-qPCR; Rapid diagnosis; RT-qPCR multiplex; Subtipagem; Subtyping; Vírus da gripe A. |
Thesagro: |
Suíno. |
Thesaurus Nal: |
Influenza A virus; Swine. |
Categoria do assunto: |
-- |
Marc: |
LEADER 02191naa a2200289 a 4500 001 2113827 005 2019-11-01 008 2019 bl uuuu u00u1 u #d 024 7 $a10.1016/j.jviromet.2019.04.005$2DOI 100 1 $aHAACH, V. 245 $aOne-step multiplex RT-qPCR for the detection and subtyping of influenza A virus in swine in Brazil.$h[electronic resource] 260 $c2019 520 $aAbstract: Pandemic H1N1, human-like H1N2 and H3N2 influenza A (IAV) viruses are co-circulating in swine herds in Brazil. The genetic analysis of the Brazilian IAVs has shown that they are genetically distinct from viruses found in swine in other countries; therefore, an update of the diagnostic assays for IAV detection and subtyping is needed. This study describes the development and validation of a TaqMan based ? one-step multiplex RT-qPCR to discriminate the hemagglutinin and neuraminidase genes of the three major IAV ubtypes circulating in pigs in Brazil. The RT-qPCR assays presented 100% (95.7?100, CI 95%) of diagnostic sensitivity in the analysis of 85 IAVs, previously characterized by sequencing. The limits of detection ranged from 5.09 × 101 to 5.09 × 103 viral RNA copies/μL. For the analytical specificity, 73 pig samples collected during 2017 and 2018 were analyzed, resulting in the identification of the subtype in 74.0% (62.9?82.7, CI 95%) of samples. From these, 46.3% were H3N2, 33.3% were H1N1, 11.1% were H1N2 and 3.7% were HxN1. Mixed viral infections (3.7%) and reassortant viruses (1.9%) were also detected by the test. This multiplex RT-qPCR assay provides a fast and specific diagnostic tool for identification of different subtypes and lineages of IAV in pigs, contributing to the monitoring of influenza in swine. 650 $aInfluenza A virus 650 $aSwine 650 $aSuíno 653 $aDiagnóstico rápido 653 $aMultiplex RT-qPCR 653 $aRapid diagnosis 653 $aRT-qPCR multiplex 653 $aSubtipagem 653 $aSubtyping 653 $aVírus da gripe A 700 1 $aGAVA, D. 700 1 $aCANTAO, M. E. 700 1 $aFRANCO, A. C. 773 $tJournal of Virological Methods$gv. 269, p. 43-48, 2019.
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3. |  | KITAJIMA, E. W.; TASSI, A. D.; SAITO, M. S. G.; SALAROLI, R. B.; CHABI-JESUS, C.; ASTUA, J. de F. Novas espécies hospedeiras do vírus da leprose do ligustro (Ligustrum leprosis virus-LigLV). In: CONGRESSO PAULISTA DE FITOPATOLOGIA, 40., 2017, Campinas. SP: Instituro Agronômico, 2017Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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10. |  | DIETZGEN, R. G.; ASTUA, J. de F.; CHABI-JESUS, C.; RAMOS-GONZÁLEZ, P. L.; GOODIN, M. M.; KONDO, H.; TASSI, A. D.; KITAJIMA, E. W. Dichorhaviruses in their host plants and mite vectors. Advances in Virus Research, Elsevier, 2018. 30p. il.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
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13. |  | SIVIERO, A.; MATTAR, E. P. L.; CAMELO-GARCIA, V.; RAMOS-GONZÁLEZ, P. L.; CHABI-JESUS, C.; SANDE, O. F. L.; ZERBINI, F. M.; KITAJIMA, E. W. Levantamento de vírus de plantas no Estado do Acre. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2109, Recife. Os avanços da Fitopatologia na Era Genômica: anais. Recife: SBF: UFPRE/PPGF, 2019. p. 776.Tipo: Resumo em Anais de Congresso |
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15. |  | RAMOS-GONZÁLEZ, P. L.; CHABI-JESUS, C.; TASSI, A. D.; CALEGARIO, R. F.; HARAKAVA, R.; NOME, C F.; KITAJIMA, E. W.; ASTUA, J. de F. A Novel Lineage of Cile-Like Viruses Discloses the Phylogenetic Continuum Across the Family Kitaviridae. Frontiers in Microbiology, v.28, n.13, 836076, March 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
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16. |  | CHABI-JESUS, C.; RAMOS-GONZÁLEZ, P. L.; TASSI, A. D.; BARGUIL, B. M.; BESERRA JUNIOR, J. E. A.; HARAKAVA, R.; KITAJIMA, E. W.; ASTUA, J. de F. First Report of Citrus Chlorotic Spot Virus Infecting the Succulent Plant Agave desmettiana. Plant Disease, v.103, n. 6, June 2019.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
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17. |  | SAUVÊTRE, P.; VENIANT, E.; CROQ, G.; TASSI, A. D.; KITAJIMA, E. W.; CHABI-JESUS, C.; RAMOS-GONZÁLEZ, P. L.; ASTUA, J. de F.; FERREIRA, D. N. M. First report of orchid fleck virus in the orchid collection of Jardin du Luxembourg, Paris, France. Plant Disease, v. 102, n. 12, p. 2670, 2018. Na publicação: J. Freitas-Astúa, D. Navia.Tipo: Nota Técnica/Nota Científica |
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19. |  | CHABI-JESUS, C.; RAMOS-GONZÁLEZ, P. L.; TASSI, A. D.; GUERRA-PERAZA, O.; KITAJIMA, E. W.; HARAKAVA, R.; BESERRA, JR. J. E. A.; ASTUA, J. de F. Identification and characterization of citrus chlorotic spot virus, a new dichorhavirus associated with citrus leprosis-like symptoms. Plant Disease, v.102, p. 1588-1598, 2018.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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