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| Registros recuperados : 103 | |
| 81. |  | ZUCCHI, M. I.; PINHEIRO, J. B.; VELLO, N. A.; OLIVEIRA, E. J. de; ARIAS, C. A. A.; PRIOLLI, R. H. G.; MOLLER, M.; COLOMBO, C. A. Uso de marcadores microssatélites na caracterização de cultivares brasileiras de soja. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 3., 2005, Gramado. Anais... Passo Fundo: Embrapa Trigo; Sociedade Brasileira de Melhoramento de Plantas, 2005. 1 CD-ROM. Seção: Área 1 - Espécies Anuais - Resumos: Pdf.1645. Editado por Ana Christina Sagebin Albuquerque, Cláudia de Mori, Edson Iorczeski, João Carlos Haas, Paulo Fernando Bertagnolli.| Biblioteca(s): Embrapa Soja. |
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| 82. | | TOMAZELLI, I. L.; CESTONARO, T.; ABREU, P. G. de; ABREU, V. M. N.; HASSEMER, M. J.; ZUCCHI, M. C.; DALLA COSTA, C. A. Variabilidade espacial da amônia em aviários de frango de corte In: JORNADA DE INICIAÇÃO CIENTÍFICA, 3., 2009, Concórdia. Anais... Concórdia: Embrapa Suínos e Aves/UNC, 2009. 1 CD-ROM Projeto/Plano de Ação: 03.07.52.000-02| Biblioteca(s): Embrapa Suínos e Aves. |
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| 83. | | TOMAZELLI, I. L.; CESTONARO, T.; ABREU, P. G. de; ABREU, V. M. N.; HASSEMER, M. J.; ZUCCHI, M. C.; DALLA COSTA, C. A. Variabilidade espacial de dióxido de carbono em aviários de frango de corte In: JORNADA DE INICIAÇÃO CIENTÍFICA, 3., 2009, Concórdia. Anais... Concórdia: Embrapa Suínos e Aves/UNC, 2009. 1 CD-ROM Projeto/Plano de Ação: 03.07.52.000-02| Biblioteca(s): Embrapa Suínos e Aves. |
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| 84. | | SANTOS, M. O.; SASSAKI, R. P.; FERREIRA, T. H. S.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; FALEIRO, F. G.; JUNGMANN, L.; ZUCCHI, M. I.; SOUZA, A. P. Polymorphic microsatellite loci for Stylosanthes macrocephala Ferr. et Costa, a tropical forage legume Conservation Genetics Resources, v. 1, p. 481-485, 2009.| Biblioteca(s): Embrapa Cerrados. |
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| 85. | | SANTOS, M. O.; SASSAKI, R. P.; FERREIRA, T. H. S.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; FALEIRO, F. G.; JUNGMANN, L.; ZUCCHI, M. I.; SOUZA, A. P. Polymorphic microsatellite loci for Stylosanthes macrocephala Ferr. et Costa, a tropical forage legume Conservation Genetics Resources, v.1, p. 481-485, 2009.| Biblioteca(s): Embrapa Gado de Corte. |
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| 86. | | PERSEGUINI, J. M. C. K.; CHIORATTO, A. F.; ZUCCHI, M. I.; COLOMBO, C. A.; CARBONELL, S. A. M.; MONDEGO, J. M. C.; GAZAFFI, R.; GARCIA, A. A. F.; CAMPOS, T. de; SOUZA, A. P. de; RUBIANO, L. B. Genetic diversity in cultivated carioca common beans based on molecular marker analysis. Genetics and Molecular Biology, Ribeirão Preto, v. 34, n. 1, p. 88-102, 2011.| Biblioteca(s): Embrapa Acre. |
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| 87. | | JUNGMANN, L.; VIGNA, B. B. Z.; BOLDRINI, A. C. B.; SOUSA, A. C. B.; VALLE, C. B. do; RESENDE, R. M. S.; PAGLIARINI, M. S.; ZUCCHI, M. I.; SOUZA, A. P. de. Genetic diversity and population structure analysis of the tropical pasture grass Brachiaria humidicola based on microsatellites, cytogenetics, morphological traits, and geographical origin. Genome, v.53, n.9, p. 698-709, Sept. 2010.| Biblioteca(s): Embrapa Gado de Corte. |
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| 88. | | CIDADE, F. W.; VIGNA, B. B. Z.; SOUZA, F. H. D. de; VALLS, J. F. M.; DALL´AGNOL, M.; ZUCCHI, M.; SOUZA-CHIES, T. T. de; SOUZA, A. P. Genetic variation in polyploid forage grass: assessing the molecular genetic variability in the Paspalum genus. BMC Genetics, v. 14, 2013.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 89. | | TOLEDO-SILVA, G. de; SANTOS-GARCIA, M. O.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Molecular genetic evaluation of the Stylosanthes capitata Vog. and Stylosanthes macrocephala Ferr. et Costa germoplasms. In: INTERNATIONAL SYMPOSIUM ON FORAGE BREEDING, 3., 2011, Bonito, MS. Breeding forage for climate change adaptation and mitigation - eco-efficient animal produtction: proceedings. [Campo Grande, MS: Embrapa Gado de Corte], 2011. 104-107 1 CD-ROM| Biblioteca(s): Embrapa Gado de Corte. |
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| 90. | | TOLEDO-SILVA, G. de; SANTOS-GARCIA, M. O.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Molecular genetic evaluation of the Stylosanthes capitata Vog. and Stylosanthes macrocephala Ferr. et Costa germoplasms. In: INTERNATIONAL SYMPOSIUM ON FORAGE BREEDING, 3., 2011, Bonito, MS. Breeding forage for climate change adaptation and mitigation - eco-efficient animal produtction: proceedings. [Campo Grande, MS: Embrapa Gado de Corte], 2011. 104-107 1 CD-ROM| Biblioteca(s): Embrapa Cerrados. |
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| 91. | | JUNGMANN, L.; VIGNA, B. B. Z.; BOLDRINI, K. R.; SOUZA, A. C. B.; VALLE, C. B. do; RESENDE, R. M. S.; PAGLIARINI, M. S.; ZUCCHI, M. I.; SOUZA, A. P. de. A survey of a germplasm collection of Brachiaria humidicola (Rendle) Scweick. using microssatellite markers, cytogenetics, morphological traits and geographical origin. In: INTERNATIONAL SYMPOSIUM ON THE MOLECULAR BREEDING OF FORAGE AND TURF: MBFT, 2010, 6., 2010, Buenos Aires. [Resumos...]. Buenos Aires: Ediciones INTA, 2010. p. 22-23| Biblioteca(s): Embrapa Gado de Corte. |
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| 92. | | VALDISSER, P. A. M. R.; PEREIRA, W. J.; MORAIS JUNIOR, O. P. de; MENDONÇA, J. A.; SARTORI, D. E. L.; LIMA, LUANN V. V. O.; BORBA, T. C. de O.; BRONDANI, C.; ZUCCHI, M. I.; VIANELLO, R. P. Análise de associação genômica ampla (GWAS) para tolerância à seca em feijoeiro comum. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 12., 2017, Piracicaba. Produtividade e sustentabilidade da cultura do feijão: do campo para a mesa: resumos. Piracicaba: CENA: IAC, 2017. p. 67. CONAFE| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 93. | | OLIVEIRA, E. J. de; GARCIA, A. A. F.; MUNHOZ, C. de F.; MARGARIDO, G. R. A.; CONSOLI, L.; MATTA, F. de P.; MORAES, M. C. de; ZUCCHI, M. I.; FUNGARO, M. H. P.; VIEIRA, M. L. C. Integração de mapas genético-moleculares de maracujá-amarelo. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 4., 2007, São Lourenço. São Lourenço:[s.n.], 2007.| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 94. | | OLIVEIRA, E. J.; VIEIRA, M. L. C.; GARCIA, A. A. F.; MUNHOZ, C. F.; MARGARIDO, G. R. A.; CONSOLI, L.; MATTA, F. P.; MORAES, M. C.; ZUCCHI, M. I.; FUNGARO, M. H. P. An integrated molecular map yellow passion fruit based on simultaneous maximum-likelihood estimation of linkage and linkage phases. Journal of the American Society Horticultural Science, Mount Vernon, v. 133, n. 1, p. 35-41, jan. 2008. il.| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 95. | | RIGOTTI, M.; FACANALI, R.; HABER, L. L.; VIEIRA, M. A. R.; ISOBE, M. T. C.; CAVALLARI, M. M.; BAJAY, M. M.; ZUCCHI, M. I.; PINHEIRO, J. B.; MARQUES, M. O. M. Chemical and genetic diversity of Baccharis dracunculifolia DC. (Asteraceae) from the Cerrado biome. Biochemical Systematics and Ecology, v. 111, dec. 2023, 104735. 8 p.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 96. | | SANTOS-GARCIA, M. O.; TOLEDO-SILVA, G. de; SASSAKI, R. P.; FERREIRA, T. H.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Using genetic diversity information to establish core collections of Stylosanthes capitata and Stylosanthes macrocephala. Genetics and Molecular Biology, São Paulo, v.35, n.4, p.847-861,Nov. 2012| Biblioteca(s): Embrapa Gado de Corte. |
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| 97. | | SANTOS-GARCIA, M. O.; TOLEDO-SILVA, G.; SASSAKI, R. P.; FERREIRA, T. H.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. Using genetic diversity information to establish core collections of Stylosanthes capitata and Stylosanthes macrocephala. Genetics and Molecular Biology, online ahead of print 2012.| Biblioteca(s): Embrapa Cerrados. |
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| 98. | | VALDISSER, P. A. M. R.; MÜLLER, B. S. F.; ALMEIDA FILHO, J. E. de; MORAIS JÚNIOR, O. P.; GUIMARÃES, C. M.; BORBA, T. C. O.; SOUZA, I. P. de; ZUCCHI, M. I.; NEVES, L. G.; COELHO, A. S. G.; BRONDANI, C.; VIANELLO, R. P. Genome-wide association studies detect multiple QTLs for productivity in mesoamerican diversity panel of common bean under drought stress. Frontiers in Plant Science, v. 11, 574674, Nov. 2020.| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 99. | | VIANA, J. P. G.; SIQUEIRA, M. V. B. M.; ARAUJO, F. L.; GRANDO, C.; SUJII, P. S.; SILVESTRE, E. de A.; NOVELLO, M.; PINHEIRO, J. B.; CAVALLARI, M. M.; BRANCALION, P. H. S.; RODRIGUES, R. R.; SOUZA, A. P. de; CATCHEN, J.; ZUCCHI, M. I. Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw. Plos One, v. 13, n. 3, e0192165, p. 1-14, 2018.| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 100. | | SOUZA, L. M. de; LE GUEN, V.; CERQUEIRA-SILVA, C. B. M.; SILVA, C. C.; MANTELLO, C. C.; CONSON, A. R. O.; VIANNA, J. P. G.; ZUCCHI, M. I.; SCALOPPI JUNIOR, E. J.; FIALHO, J. de F.; MORAES, M. L. T. de; GONÇALVES, P. de S.; SOUZA, A. P. de. Genetic diversity strategy for the management and use of rubber genetic resources: more than 1,000 wild and cultivated accessions in a 100-Genotype core collection. Plos One, San Francisco, v. 10, n. 7, e013607, 2015.| Biblioteca(s): Embrapa Cerrados. |
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| Registros recuperados : 103 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Arroz e Feijão. |
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Data corrente: |
26/09/2017 |
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Data da última atualização: |
31/10/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
VALDISSER, P. A. M. R.; PEREIRA, W. J.; ALMEIDA FILHO, J. E.; MÜLLER, B. S. F.; COELHO, G. R. C.; MENEZES, I. P. P. de; VIANNA, J. P. G.; ZUCCHI, M. I.; LANNA, A. C.; COELHO, A. S. G.; OLIVEIRA, J. P. de; MORAES, A. da C.; BRONDANI, C.; VIANELLO, R. P. |
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Afiliação: |
PAULA ARIELLE M RIBEIRO VALDISSER, CNPAF; WENDELL J. PEREIRA, UNB; JANEO E. ALMEIDA FILHO, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Rio de Janeiro-; BARBARA S. F. MULLER, UNB; GESIMARIA RIBEIRO COSTA COELHO, CNPAF; IVANDILSON P. P. DE MENEZES, INSTITUTO FEDERAL GOIANO, Urutaí-GO; JOÃO P. G. VIANNA, UNICAMP; MARIA I. ZUCCHI, UNICAMP; ANNA CRISTINA LANNA, CNPAF; ALEXANDRE S. G. COELHO, UFG; JAISON PEREIRA DE OLIVEIRA, CNPAF; ALESSANDRA DA CUNHA MORAES, CNPAF; CLAUDIO BRONDANI, CNPAF; ROSANA PEREIRA VIANELLO, CNPAF. |
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Título: |
In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
BMC Genomics, v. 18, Article 423, 30 mai. 2017. |
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DOI: |
10.1186/s12864-017-3805-4 |
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Idioma: |
Inglês |
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Conteúdo: |
Background: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 18; Mesoamerican: 69) and between the gene pools (59 SNPs), predominantly on chromosomes 1 and 9. The LD extension estimate corrected for population structure and relatedness (r2 SV) was~88 kbp, while for the Andean gene pool was~395 kbp, and for the Mesoamerican was ~ 130 kbp. Conclusions: For common bean, DArTseq provides an efficient and cost-effective strategy of generating SNPs for large-scale genome-wide studies. The DArTseq resulted in an operational panel of 560 polymorphic SNPs in linkage equilibrium, providing high genome coverage. This SNP set could be used in genotyping platforms with many applications, such as population genetics, phylogeny relation between common bean varieties and support to molecular breeding approaches. MenosBackground: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 1... Mostrar Tudo |
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Palavras-Chave: |
Core collection; Diversity analysis; Diversity arrays technology; Loci under selection. |
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Thesagro: |
Feijão; Genética vegetal; Phaseolus vulgaris. |
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Thesaurus NAL: |
Genotyping; Linkage disequilibrium; Single nucleotide polymorphism. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/164318/1/CNPAF-2017-bmc.pdf
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Marc: |
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001 2076278
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024 7 $a10.1186/s12864-017-3805-4$2DOI
100 1 $aVALDISSER, P. A. M. R.
245 $aIn-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping.$h[electronic resource]
260 $c2017
520 $aBackground: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small farmers. The availability of the complete sequences of the two common bean genomes has dramatically accelerated and has enabled new experimental strategies to be applied for genetic research. DArTseq has been widely used as a method of SNP genotyping allowing comprehensive genome coverage with genetic applications in common bean breeding programs. Results: Using this technology, 6286 SNPs (1 SNP/86.5 Kbp) were genotyped in genic (43.3%) and non-genic regions (56. 7%). Genetic subdivision associated to the common bean gene pools (K = 2) and related to grain types (K = 3 and K = 5) were reported. A total of 83% and 91% of all SNPs were polymorphic within the Andean and Mesoamerican gene pools, respectively, and 26% were able to differentiate the gene pools. Genetic diversity analysis revealed an average HE of 0.442 for the whole collection, 0.102 for Andean and 0.168 for Mesoamerican gene pools (FST = 0.747 between gene pools), 0. 440 for the group of cultivars and lines, and 0.448 for the group of landrace accessions (FST = 0.002 between cultivar/line and landrace groups). The SNP effects were predicted with predominance of impact on non-coding regions (77.8%). SNPs under selection were identified within gene pools comparing landrace and cultivar/line germplasm groups (Andean: 18; Mesoamerican: 69) and between the gene pools (59 SNPs), predominantly on chromosomes 1 and 9. The LD extension estimate corrected for population structure and relatedness (r2 SV) was~88 kbp, while for the Andean gene pool was~395 kbp, and for the Mesoamerican was ~ 130 kbp. Conclusions: For common bean, DArTseq provides an efficient and cost-effective strategy of generating SNPs for large-scale genome-wide studies. The DArTseq resulted in an operational panel of 560 polymorphic SNPs in linkage equilibrium, providing high genome coverage. This SNP set could be used in genotyping platforms with many applications, such as population genetics, phylogeny relation between common bean varieties and support to molecular breeding approaches.
650 $aGenotyping
650 $aLinkage disequilibrium
650 $aSingle nucleotide polymorphism
650 $aFeijão
650 $aGenética vegetal
650 $aPhaseolus vulgaris
653 $aCore collection
653 $aDiversity analysis
653 $aDiversity arrays technology
653 $aLoci under selection
700 1 $aPEREIRA, W. J.
700 1 $aALMEIDA FILHO, J. E.
700 1 $aMÜLLER, B. S. F.
700 1 $aCOELHO, G. R. C.
700 1 $aMENEZES, I. P. P. de
700 1 $aVIANNA, J. P. G.
700 1 $aZUCCHI, M. I.
700 1 $aLANNA, A. C.
700 1 $aCOELHO, A. S. G.
700 1 $aOLIVEIRA, J. P. de
700 1 $aMORAES, A. da C.
700 1 $aBRONDANI, C.
700 1 $aVIANELLO, R. P.
773 $tBMC Genomics$gv. 18, Article 423, 30 mai. 2017.
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