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| Registros recuperados : 17 | |
| 5. |  | SILVA, P. R. A. da; DRESCHEL, M. M.; SOARES, C. de P.; VIDAL, M. S.; BALDANI, J. I. Efeito antagônico de bactérias diazotróficas contra fungos patógenos de cana-de-açúcar In: SEMANA CIENTÍFICA JOHANNA DÖBEREINER, 13., 2013, Seropédica Ciência, saúde e esporte: caderno de resumos... Seropédica: Embrapa Agrobiologia, 2013.| Biblioteca(s): Embrapa Agrobiologia. |
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| 7. | | POLESE, V.; SOARES, C. de P.; SILVA, P. R. A. da; ARAUJO, J. L. S. de; BALDANI, J. I.; VIDAL, M. S. Selection and validation of reference genes for RT-qPCR indicates that juice of sugarcane varieties modulate the expression of C metabolism genes in the endophytic diazotrophic Herbaspirillum rubrisubalbicans strain HCC103. Antonie van Leeuwenhoekv, 110, n. 12, p. 1555-1568, 2017.| Biblioteca(s): Embrapa Agrobiologia. |
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| 8. | | SILVA, P. R. A. da; VIDAL, M. S.; SOARES, C. de P.; POLESE, V.; ARAUJO, J. L. S. de; BALDANI, J. I. Selection and evaluation of reference genes for RT-qPCR expression studies on Burkholderia tropica strain Ppe8, a sugarcane-associated diazotrophic bacterium grown with different carbon sources or sugarcane juice Antonie van Leeuwenhoek, v. 109, n. 111, p. 1493-1502, 2016. Epub, 17 Aug., 2016.| Biblioteca(s): Embrapa Agrobiologia. |
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| 9. | | ROCHA, F. Y. O.; OLIEIRA, C. M. de; SILVA, P. R. A. da; MELO, L. H. V. de; CARMO, M. G. F. do; BALDANI, J. I. Taxonomical and functional characterization of Bacillus strains isolated from tomato plants and their biocontrol activity against races 1, 2 and 3 of Fusarium oxysporum f. sp. Lycopersici Applied Soil Ecology, London, v. 120, p. 8-19, 2017| Biblioteca(s): Embrapa Agrobiologia. |
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| 10. | | SILVA, P. R. A. da; SCHWAB, S.; ARAUJO, J. L. S. de; TEIXEIRA, K. R. dos S.; VIDAL, M. S.; BALDANI, J. I. Genômica funcional da bactéria diazotrófica Burkholderia tropica cultivada em líquido de apoplasto de cana-de-açúcar In: SEMANA CIENTÍFICA JOHANNA DÖBEREINER, 12., 2012. Economia verde, sustentabilidade e erradicação da pobreza: caderno de resumos. Seropédica: Embrapa Agrobiologia, 2012.| Biblioteca(s): Embrapa Agrobiologia. |
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| 11. | | POLESE, V.; SILVA, P. R. A.; PESSOA, D. D. V.; TADRA-SFEIR, M. Z.; SOUZA, E. M.; ARAUJO, J. L. S. de; BALDANI, J. I.; VIDAL, M. S. Transcriptional profile of Herbaspirillum rubrisubalbicans in response of sugarcane apoplastic fluid. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland, New Zealand. Proceedings... Massey University, 2018.| Biblioteca(s): Embrapa Agrobiologia. |
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| 12. | | POLESE, V.; SILVA, P. R. A.; VALE, E.; HERINGER, A. S.; SOUZA FILHO, G. A. de; SILVEIRA, V.; BALDANI, J. I.; VIDAL, M. S. The effect of sugarcane apoplastic fluid on the proteome of HCC103 strain of Herbaspirillum rubrisubalbicans. In: SYMPOSIUM ON BIOLOGICAL NITROGEN FIXATION, 16., LATINAMERICAN WORKSHOP OF PGPR, 4., RELARE, 19., 2018, Foz do Iguaçu. Book of abstract....Foz do Iguaçu: Emprapa, 2018. p. 43 Session 4, Poster III.9| Biblioteca(s): Embrapa Agrobiologia. |
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| 13. | | SILVA, P. R. A.; ARAUJO, J. L. S. de; VIDAL, M. S.; CRUZ, L. M.; SOUZA, E. M. de; BALDANI, J. I. Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium. Brazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.| Biblioteca(s): Embrapa Agrobiologia. |
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| 14. | | SILVA, P. R. A.; VIDAL, M. S.; POLESE, V.; TADRA-SFEIR, M. Z.; ARAUJO, J. L. S. de; SOUZA, E. M.; BALDANI, J. I. Differential gene expression of diazotrophic burkholderia tropica PPE5 strain cultivated in sugarcane apoplast fluid In: CONGRESSO BRASILEIRO DE GENÉTICA, 61., 2015, Águas de Lindóia. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2015.| Biblioteca(s): Embrapa Agrobiologia. |
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| 15. | | POLESE, V.; SILVA, P. R. A.; TADRA-SFEIR, M. Z.; ARAUJO, J. L. S. de; SOUZA, E. M.; BALDANI, J. I.; VIDAL, M. S. Functional genomic of Herbaspirillum rubrisubalbicans HCC103 strain grown in the presence of sugarcane apoplastic liquid In: CONGRESSO BRASILEIRO DE MICROBIOLOGIA, 28., 2015, Florianópolis. Resumos. Florianópolis: Sociedade Brasileira de Microbiologia, 2015.| Biblioteca(s): Embrapa Agrobiologia. |
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| 16. | | SILVA, P. R. A. da; VIDAL, M. S.; TADRA-SFEIR, M.Z.; ARAUJO, J. L. S. de; SOUZA, E. M. de; BALDANI, J. I. In vitro study suggests that stem apoplastic liquid of sugarcance modulates the chemotaxis and defense mechanism of the diazotrophic Burkholderia tropica strain PPe8 In: SYMPOSIUM ON BIOLOGICAL NITROGEN FIXATION WITH NON-LEGUMES, 15.; SYMPOSIUM OF THE EUROPEAN NITROGEN FIXATION CONFERENCE, 12., 2016, Hungary. Book of abstracts. Hungary: Biological Research Center, 2016. p. 47| Biblioteca(s): Embrapa Agrobiologia. |
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| 17. | | SILVA, P. R. A. da; VIDAL, M. S.; SOARES, C. de P.; POLESE, V.; TADRA-SFEIR, M. Z.; SOUZA, E. M. de; ARAUJO, J. L. S. de; BALDANI, J. I. Sugarcane apoplast fluid modulates the global transcriptional profile of the diazotrophic bacteria Paraburkholderia tropica strain Ppe8. PLOS ONE, v. 13, n. 12, e0207863, 2018.| Biblioteca(s): Embrapa Agrobiologia. |
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| Registros recuperados : 17 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Agrobiologia. |
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Data corrente: |
13/11/2017 |
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Data da última atualização: |
08/05/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SILVA, P. R. A.; ARAUJO, J. L. S. de; VIDAL, M. S.; CRUZ, L. M.; SOUZA, E. M. de; BALDANI, J. I. |
|
Afiliação: |
PAULA RENATA ALVES DA SILVA, UFRRJ; JEAN LUIZ SIMOES DE ARAUJO, CNPAB; MARCIA SOARES VIDAL, CNPAB; LEONARDO MAGALHÃES CRUZ, UFPR; EMANUEL MALTEMPI DE SOUZA, UFPR; JOSE IVO BALDANI, CNPAB. |
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Título: |
Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Brazilian Journal of Microbiology, v. 49, n. 2, p. 2010-2011, Apr./Jun. 2018. |
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DOI: |
https://doi.org/10.1016/j.bjm.2017.07.005 |
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Idioma: |
Inglês |
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Conteúdo: |
Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. |
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Palavras-Chave: |
Diazotrophic; Next generation sequencing; Nitrogen fixing; Secretion system. |
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Categoria do assunto: |
S Ciências Biológicas |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/176513/1/JEAN-IVO-MARCIA-Draft-genome.pdf
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Marc: |
LEADER 01634naa a2200241 a 4500
001 2079611
005 2018-05-08
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.bjm.2017.07.005$2DOI
100 1 $aSILVA, P. R. A.
245 $aDraft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium.$h[electronic resource]
260 $c2018
520 $aParaburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association.
653 $aDiazotrophic
653 $aNext generation sequencing
653 $aNitrogen fixing
653 $aSecretion system
700 1 $aARAUJO, J. L. S. de
700 1 $aVIDAL, M. S.
700 1 $aCRUZ, L. M.
700 1 $aSOUZA, E. M. de
700 1 $aBALDANI, J. I.
773 $tBrazilian Journal of Microbiology$gv. 49, n. 2, p. 2010-2011, Apr./Jun. 2018.
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