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| Registros recuperados : 26 | |
| 1. |  | GRATTAPAGLIA, D.; SILVA JUNIOR, O. B. da; RESENDE, L. V.; SILVA, P. I. T. A five-species 50K Axiom SNP microarray allows high quality genotyping of coffee, cashew, cassava, brazilian pine and eucalyptus. In: PLANT AND ANIMAL GENOME CONFERENCE, 25., 2017, San Diego. [Abstracts...]. San Diego, CA: [s.n.], 2017.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | SILVA, P. I. T.; LEAL-BERTIOLI, S. C. M.; BERTIOLI, D. J.; GUIMARÃES, P. M.; ARAUJO, A. C. G. de. Anatomia foliar de duas espécies silvestres e um anfidiplóide sintético de Arachis. In: CONGRESSO NACIONAL DE BOTÂNICA, 58., 2007, São Paulo. A botânica no Brasil: pesquisa, ensino e políticas públicas ambientais. [S.l.]: Sociedade Botânica do Brasil, 2007.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 5. | | SILVA, P. I. T.; SILVA JUNIOR, O. B. da; RESENDE, L. V.; SOUSA, V. A. de; AGUIAR, A. V. de; GRATTAPAGLIA, D. A 3K Axiom SNP array from a transcriptomewide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze. PLoS ONE, v. 15, n. 8, e0230404, 2020.| Biblioteca(s): Embrapa Florestas; Embrapa Recursos Genéticos e Biotecnologia. |
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| 6. | | SILVA, P. I. T.; BERTIOLI, S. C. de M. L.; BERTIOLI, D. J.; GUIMARAES, P. M.; ARAUJO, A. C. G. de. Anatomia foliar de dois cultivares de Arachis hypogaea. In: ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA, 14., 2009, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2009. Resumo 009. p. 43| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 7. | | NIELEN, S.; SILVA, P. I. T.; GUIMARÃES, P.; BERTIOLI, D.; LEAL-BERTIOLI, S. C.; CARNEIRO, V. T. C.; ARAÚJO, A. C. G. Analysis of the expression and localization in chromosomes of genes by in situ hibridization. In: SIMPÓSIO DE MICROSCOPIA NO CERRADO, 2008, Pirenópolis, GO. [Anais...] Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2008. 321 p. (Embrapa Recursos Genéticos e Biotecnologia, 265) Organizadoras: Ana Claudia Guerra de Araújo e Sônia Nair Báo. p. 45-47. Resumo de palestra.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 8. | | SILVA, P. I. T.; RIBEIRO, S. G.; PROITE, K.; GUIMARÃES, P. M.; BERTIOLI, S.; LEAL BERTIOLI, D.; CARNEIRO, R.; ARAUJO, A. C. G. Analysis of the expression of metalothionein (asmet2) in Arachis stenosperma in response to Meloidogyne arenaria (nematoda) by in situ hibridyzation. In: SIMPÓSIO DE MICROSCOPIA NO CERRADO, 2008, Pirenópolis, GO. [Anais...] Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2008. 321 p. (Embrapa Recursos Genéticos e Biotecnologia, 265) Organizadoras: Ana Claudia Guerra de Araújo e Sônia Nair Báo. p. 246-249.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 9. | | SILVA, P. I. T.; RIBEIRO, S. G.; PROITE, K.; GUIMARÃES, P. M.; BERTIOLI, S.; LEAL BERTIOLI, D.; CARNEIRO, R. M. D. G.; ARAUJO, A. C. G. Analysis of the expression of metalothionein: like genes in Arachis stenosperma in response to Meloidogyne arenaria infection by in situ hybridyzation. In: SIMPÓSIO BRASILEIRO DE GENÉTICA MOLECULAR DE PLANTAS, 2., 2009, Búzios. Programa e resumos. [s.l.]: Sociedade Brasileira de Genética, 2009. p. 130| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 10. | | PESSOA FILHO, M. A. C. de P.; SILVA, P. I. T.; RESENDE, L. V.; VIEIRA, E. A.; FALEIRO, F. G.; GRATTAPAGLIA, D.; SILVA JUNIOR, O. B. da. Application of the Axiom 3K SNP genotyping array in cassava breeding and genetics. In: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Proceedings... Jersey City, NJ: Scherago International, 2018. PAG XXVI| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 11. | | PESSOA FILHO, M. A. C. de P.; SILVA, P. I. T.; RESENDE, L. V.; VIEIRA, E. A.; FALEIRO, F. G.; GRATTAPAGLIA, D.; SILVA JUNIOR, O. B. da. Application of the Axiom 3K SNP genotyping array in cassava breeding and genetics. In: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Proceedings... Jersey City, NJ: Scherago International, 2018. PAG XXVI| Biblioteca(s): Embrapa Cerrados. |
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| 12. | | FONTENELE, R. S.; ALVES-FREITAS, D. M. T.; SILVA, P. I. T.; FORESTI, J.; SILVA, P. R.; GODINHO, M. T.; VARSANI, A.; RIBEIRO, S. G. Discovery of the first maize-infecting mastrevirus in the Americas using a vector-enabled metagenomics approach. Archives of Virology, v. 163, n. 1, p. 263-267, 2018.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 13. | | SILVA JUNIOR, O. B. da; RESENDE, L. V.; VIDAL, R. F.; BORDALLO, P. N.; SILVA, P. I. T.; MELO, D. S.; TOGAWA, R. C.; GRATTAPAGLIA, D. A chromosome-scale assembly of the cashew tree genome: leveraging the combined power of PacBio, DNA-Chromatin Proximity Ligation and SNP linkage maps. In: PLANT AND ANIMAL GENOME CONFERENCE, 25., 2017, San Diego. [Abstracts...]. San Diego, CA: [s.n.], 2017. W354.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 14. | | LEAL BERTIOLI, S. C. M.; VADEZ, V.; GUIMARÃES, P. M.; ARAÚJO, A. C. G.; SILVA, P. I. T.; MORAES, L. F. M. V.; BERTIOLI, D. J. Characterisation of transpiration profile in responde to water deficit in Arachis species and synthetic amphydiplides. In: ANNUAL RESEARCH MEETING, 2007, Benoni, South Africa, Poster Abstracts...Benoni: Generation Challenge Programme - CGIAR, 2007. p. 62.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 15. | | ARAUJO, A. C. G.; VADEZ, V.; SILVA, P. I. T.; CASTRO, R. C.; GUIMARÃES, P. M.; BERTIOLI, D.; LEAL BERTIOLI, S. C. M. Characterization of drought-related physiological and morphological traits in wild, cultivated and synthetic amphidiploides of Arachis. In: SIMPÓSIO DE MICROSCOPIA NO CERRADO, 2008, Pirenópolis, GO. [Anais...] Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2008. 321 p. (Embrapa Recursos Genéticos e Biotecnologia, 265) Organizadoras: Ana Claudia Guerra de Araújo e Sônia Nair Báo. p. 62-63.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 16. | | LEAL-BERTIOLI, S. C. M.; VADEZ, V.; GUIMARÃES, P. M.; SILVA, P. I. T.; MORAES, L. F. M. V.; BERTIOLI, D. J.; ARAÚJO, A. C. G. Avaliação de espécies silvestres de Arachis, híbridos e cultivares de amendoim para características relacionadas à resposta ao estresse hídrico. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2007. 16 p. (Embrapa Recursos Genéticos e Biotecnologia. Boletim de pesquisa e desenvolvimento, 166).| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 17. | | SILVA, P. Í. T.; RIBEIRO, S.; PROITE, K.; GUIMARÃES, P. M.; LEAL-BERTIOLI, S. C. M.; BERTIOLI, D.; CARNEIRO, R.; ARAÚJO, A. C. G. Análise por hibridização in situ da expressão de metalotioneínas em Arachis stenosperma após inoculação com Meloigogyne arenaria (Nematoda). Brasília: Embrapa Recursos Genéticos e Biotecnologia, 2008. 14 p. (Embrapa Recursos Genéticos e Biotecnologia. Boletim de Pesquisa e Desenvolvimento, 223).| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 18. | | FERREIRA, M. E.; SILVA, P. I. T.; MARTINS, A. M.; PESSOA FILHO, M.; TOGAWA, R. C.; SOUZA SOBRINHO, F.; KARIA, C. T.; CARVALHO, M. A. Sequencing, de novo assembling and preliminary analysis of the Brachiaria ruziziensis genome. In: INTERNATIONAL SYMPOSIUM ON FORAGE BREEDING, 3., 2011, Bonito. Breeding forages for climate change adaptation and mitigation - eco-efficient animal production: proceedings... [Campo Grande: Embrapa Gado de Corte, 2011]. 1 CD-ROM.| Biblioteca(s): Embrapa Cerrados. |
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| 19. | | RESENDE, R. T.; SILVA, P. I. T.; SILVA JUNIOR, O. B. da; FREITAS, M. L. M.; SEBBENN, A. M.; SOUSA, V. A. de; AGUIAR, A. V. de; GRATTAPAGLIA, D. Age trends in genetic parameters for growth performance across country-wide provenances of the iconic conifer tree Araucaria angustifolia show strong prospects for systematic breeding and early selection. Forest Ecology and Management, v. 501, 119671, Dec. 2021. 13 p.| Biblioteca(s): Embrapa Florestas; Embrapa Recursos Genéticos e Biotecnologia. |
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| 20. | | SILVA, P. I. T.; RIBEIRO, S. G.; PROITE, K.; GUIMARÃES, P. M.; LEAL BERTIOLI, S. C. M.; BERTIOLI, D. J.; CARNEIRO, R. M. D. G.; ARAUJO, A. C. G. Análise da expressão de metalotineina (ASMET2) em Arachis stenosperma infectada com Meloidogyne arenaria (nematoda) por hibridização in situ. In: ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA, 13., 2008, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2008. Resumo 004. p. 42.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 26 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Florestas; Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
01/09/2020 |
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Data da última atualização: |
02/09/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SILVA, P. I. T.; SILVA JUNIOR, O. B. da; RESENDE, L. V.; SOUSA, V. A. de; AGUIAR, A. V. de; GRATTAPAGLIA, D. |
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Afiliação: |
PEDRO ITALO T. SILVA, UNB; ORZENIL BONFIM DA SILVA JUNIOR, Cenargen; LUCILEIDE V. RESENDE; VALDERES APARECIDA DE SOUSA, CNPF; ANANDA VIRGINIA DE AGUIAR, CNPF; DARIO GRATTAPAGLIA, Cenargen. |
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Título: |
A 3K Axiom SNP array from a transcriptomewide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
PLoS ONE, v. 15, n. 8, e0230404, 2020. |
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DOI: |
https://doi.org/10.1371/journal. pone.0230404 |
|
Idioma: |
Inglês |
|
Conteúdo: |
High-throughput SNP genotyping has become a precondition to move to higher precision and
wider genome coverage genetic analysis of natural and breeding populations of non-model
species. We developed a 44,318 annotated SNP catalog for Araucaria angustifolia, a grandiose subtropical conifer tree, one of the only two native Brazilian gymnosperms, critically endangered due to its valuable wood and seeds. Following transcriptome assembly and annotation,
SNPs were discovered from RNA-seq and pooled RAD-seq data. From the SNP catalog, an
Axiom® SNP array with 3,038 validated SNPs was developed and used to provide a comprehensive look at the genetic diversity and structure of 15 populations across the natural range of
the species. RNA-seq was a far superior source of SNPs when compared to RAD-seq in terms
of conversion rate to polymorphic markers on the array, likely due to the more efficient complexity reduction of the huge conifer genome. By matching microsatellite and SNP data on the
same set of A. angustifolia individuals, we show that SNPs reflect more precisely the actual
genome-wide patterns of genetic diversity and structure, challenging previous microsatellitebased assessments. Moreover, SNPs corroborated the known major north-south genetic
cline, but allowed a more accurate attribution to regional versus among-population differentiation, indicating the potential to select ancestry-informative markers. The availability of a public,
user-friendly 3K SNP array for A. angustifolia and a catalog of 44,318 SNPs predicted to provide ~29,000 informative SNPs across ~20,000 loci across the genome, will allow tackling still
unsettled questions on its evolutionary history, toward a more comprehensive picture of the origin, past dynamics and future trend of the species? genetic resources. Additionally, but not less
importantly, the SNP array described, unlocks the potential to adopt genomic prediction methods to accelerate the still very timid efforts of systematic tree breeding of A. angustifolia. MenosHigh-throughput SNP genotyping has become a precondition to move to higher precision and
wider genome coverage genetic analysis of natural and breeding populations of non-model
species. We developed a 44,318 annotated SNP catalog for Araucaria angustifolia, a grandiose subtropical conifer tree, one of the only two native Brazilian gymnosperms, critically endangered due to its valuable wood and seeds. Following transcriptome assembly and annotation,
SNPs were discovered from RNA-seq and pooled RAD-seq data. From the SNP catalog, an
Axiom® SNP array with 3,038 validated SNPs was developed and used to provide a comprehensive look at the genetic diversity and structure of 15 populations across the natural range of
the species. RNA-seq was a far superior source of SNPs when compared to RAD-seq in terms
of conversion rate to polymorphic markers on the array, likely due to the more efficient complexity reduction of the huge conifer genome. By matching microsatellite and SNP data on the
same set of A. angustifolia individuals, we show that SNPs reflect more precisely the actual
genome-wide patterns of genetic diversity and structure, challenging previous microsatellitebased assessments. Moreover, SNPs corroborated the known major north-south genetic
cline, but allowed a more accurate attribution to regional versus among-population differentiation, indicating the potential to select ancestry-informative markers. The availability of a public,
user-friendly 3K SNP array for A. angustif... Mostrar Tudo |
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Thesagro: |
Araucária Angustifólia. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/215688/1/journal.pone.0230404.pdf
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Marc: |
LEADER 02778naa a2200205 a 4500
001 2124667
005 2020-09-02
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1371/journal. pone.0230404$2DOI
100 1 $aSILVA, P. I. T.
245 $aA 3K Axiom SNP array from a transcriptomewide SNP resource sheds new light on the genetic diversity and structure of the iconic subtropical conifer tree Araucaria angustifolia (Bert.) Kuntze.$h[electronic resource]
260 $c2020
520 $aHigh-throughput SNP genotyping has become a precondition to move to higher precision and wider genome coverage genetic analysis of natural and breeding populations of non-model species. We developed a 44,318 annotated SNP catalog for Araucaria angustifolia, a grandiose subtropical conifer tree, one of the only two native Brazilian gymnosperms, critically endangered due to its valuable wood and seeds. Following transcriptome assembly and annotation, SNPs were discovered from RNA-seq and pooled RAD-seq data. From the SNP catalog, an Axiom® SNP array with 3,038 validated SNPs was developed and used to provide a comprehensive look at the genetic diversity and structure of 15 populations across the natural range of the species. RNA-seq was a far superior source of SNPs when compared to RAD-seq in terms of conversion rate to polymorphic markers on the array, likely due to the more efficient complexity reduction of the huge conifer genome. By matching microsatellite and SNP data on the same set of A. angustifolia individuals, we show that SNPs reflect more precisely the actual genome-wide patterns of genetic diversity and structure, challenging previous microsatellitebased assessments. Moreover, SNPs corroborated the known major north-south genetic cline, but allowed a more accurate attribution to regional versus among-population differentiation, indicating the potential to select ancestry-informative markers. The availability of a public, user-friendly 3K SNP array for A. angustifolia and a catalog of 44,318 SNPs predicted to provide ~29,000 informative SNPs across ~20,000 loci across the genome, will allow tackling still unsettled questions on its evolutionary history, toward a more comprehensive picture of the origin, past dynamics and future trend of the species? genetic resources. Additionally, but not less importantly, the SNP array described, unlocks the potential to adopt genomic prediction methods to accelerate the still very timid efforts of systematic tree breeding of A. angustifolia.
650 $aAraucária Angustifólia
700 1 $aSILVA JUNIOR, O. B. da
700 1 $aRESENDE, L. V.
700 1 $aSOUSA, V. A. de
700 1 $aAGUIAR, A. V. de
700 1 $aGRATTAPAGLIA, D.
773 $tPLoS ONE$gv. 15, n. 8, e0230404, 2020.
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