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Registro Completo |
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
09/01/2023 |
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Data da última atualização: |
09/01/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ARIYOSHI, C.; SERA, G. H.; RODRIGUES, L. M. R.; CARVALHO, F. G.; SHIGUEOKA, L. H.; MENDONÇA, A. E. S.; PEREIRA, C. T. M.; DESTÉFANO, S. A. L.; PEREIRA, L. F. P. |
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Afiliação: |
CAROLINE ARIYOSHI, UNIVERSIDADE ESTADUAL DE LONDRINA; GUSTAVO HIROSHI SERA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LUCAS MATEUS RIVERO RODRIGUES, INSTITUTO AGRONÔMICO; FILIPE GIMENEZ CARVALHO, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; LUCIANA HARUMI SHIGUEOKA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; ANA ESTER SOCATELLI MENDONÇA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; CARLOS THEODORO MOTTA PEREIRA, INSTITUTO DE DESENVOLVIMENTO RURAL DO PARANÁ; SUZETE APARECIDA LANZA DESTÉFANO, INSTITUTO BIOLÓGICO; LUIZ FILIPE PROTASIO PEREIRA, CNPCa. |
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Título: |
Development and validation of an allele-specific marker for resistance to bacterial halo blight in coffea arabica. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
Agronomy, v. 12, n. 12, 3178, 2022. |
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DOI: |
https://doi.org/10.3390/agronomy12123178 |
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Idioma: |
Inglês |
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Conteúdo: |
Bacterial halo blight (BHB) is a bacterial disease, caused by Pseudomonas syringae pv. garcae, which has been gaining prominence in the main coffee-producing regions. Chemical control of this disease increases production costs and is environmentally undesirable. In this scenario, the development of new cultivars resistant to BHB is the most economical and sustainable alternative. Marker-Assisted Selection (MAS) is an appropriate strategy to assist breeding programs for resistant genotype selection. In a previous Genome-Wide Association Study (GWAS) for C. arabica and P. syringae pv. garcae interaction, we identified a locus, probably linked to qualitative resistance to the pathogen. In this work, we developed and validated a pair of Allele-Specific-Polymerase Chain Reaction (AS-PCR) primers for this locus in C. arabica breeding populations. This pair of AS-PCR primers, called Psg_QL1, was tested both in a backcross (BC) (n = 38) and in an F2 population (n = 138) segregating for resistance to BHB. The linkage between the Psg_QL1 marker and qualitative resistance showed an accuracy of 93.75%. Our results demonstrated that the Psg_QL1 marker can be applied in MAS in a robust, simple, fast, and low-cost way. |
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Thesaurus Nal: |
Bacterial diseases of plants; Coffea arabica var. arabica; Genetic resistance; Plant breeding. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150821/1/Development-and-Validation.pdf
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Marc: |
LEADER 02105naa a2200277 a 4500
001 2150821
005 2023-01-09
008 2022 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.3390/agronomy12123178$2DOI
100 1 $aARIYOSHI, C.
245 $aDevelopment and validation of an allele-specific marker for resistance to bacterial halo blight in coffea arabica.$h[electronic resource]
260 $c2022
520 $aBacterial halo blight (BHB) is a bacterial disease, caused by Pseudomonas syringae pv. garcae, which has been gaining prominence in the main coffee-producing regions. Chemical control of this disease increases production costs and is environmentally undesirable. In this scenario, the development of new cultivars resistant to BHB is the most economical and sustainable alternative. Marker-Assisted Selection (MAS) is an appropriate strategy to assist breeding programs for resistant genotype selection. In a previous Genome-Wide Association Study (GWAS) for C. arabica and P. syringae pv. garcae interaction, we identified a locus, probably linked to qualitative resistance to the pathogen. In this work, we developed and validated a pair of Allele-Specific-Polymerase Chain Reaction (AS-PCR) primers for this locus in C. arabica breeding populations. This pair of AS-PCR primers, called Psg_QL1, was tested both in a backcross (BC) (n = 38) and in an F2 population (n = 138) segregating for resistance to BHB. The linkage between the Psg_QL1 marker and qualitative resistance showed an accuracy of 93.75%. Our results demonstrated that the Psg_QL1 marker can be applied in MAS in a robust, simple, fast, and low-cost way.
650 $aBacterial diseases of plants
650 $aCoffea arabica var. arabica
650 $aGenetic resistance
650 $aPlant breeding
700 1 $aSERA, G. H.
700 1 $aRODRIGUES, L. M. R.
700 1 $aCARVALHO, F. G.
700 1 $aSHIGUEOKA, L. H.
700 1 $aMENDONÇA, A. E. S.
700 1 $aPEREIRA, C. T. M.
700 1 $aDESTÉFANO, S. A. L.
700 1 $aPEREIRA, L. F. P.
773 $tAgronomy$gv. 12, n. 12, 3178, 2022.
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Registro original: |
Embrapa Café (CNPCa) |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Gado de Leite. Para informações adicionais entre em contato com cnpgl.biblioteca@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
13/01/2020 |
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Data da última atualização: |
06/02/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 1 |
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Autoria: |
SILVA, D. A.; COSTA, C. N.; SILVA, A. A.; SILVA, H. T.; LOPES, P. S.; SILVA, F. F.; VERONEZE, R.; THOMPSON, G.; AGUILAR, I.; CARVALHEIRA, J. |
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Afiliação: |
CLAUDIO NAPOLIS COSTA, CNPGL. |
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Título: |
Autoregressive and random regression test-day models for multiple lactations in genetic evaluation of Brazilian Holstein cattle. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Journal of Animal Breeding and Genetics, v. 137, n. 3, p. 305-315, 2020. |
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DOI: |
https://doi.org/10.1111/jbg.12459 |
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Idioma: |
Inglês |
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Conteúdo: |
Autoregressive (AR) and random regression (RR) models were fitted to test-day records from the first three lactations of Brazilian Holstein cattle with the objective of comparing their efficiency for national genetic evaluations. The data comprised 4,142,740 records of milk yield (MY) and somatic cell score (SCS) from 274,335 cows belonging to 2,322 herds. Although heritabilities were similar between models and traits, additive genetic variance estimates using AR were 7.0 (MY) and 22.2% (SCS) higher than those obtained from RR model. On the other hand, residual variances were lower in both traits when estimated through AR model. The rank correlation between EBV obtained from AR and RR models was 0.96 and 0.94 (MY) and 0.97 and 0.95 (SCS), respectively, for bulls (with 10 or more daughters) and cows. Estimated annual genetic gains for bulls (cows) obtained using AR were 46.11 (49.50) kg for MY and -0.019 (-0.025) score for SCS; whereas using RR these values were 47.70 (55.56) kg and -0.022 (-0.028) score. Akaike information criterion was lower for AR in both traits. Although AR model is more parsimonious, RR model assumes genetic correlations different from the unity within and across lactations. Thus, when these correlations are relatively high, these models tend to yield to similar predictions; otherwise, they will differ more and RR model would be theoretically sounder. |
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Palavras-Chave: |
Autoregression; Legendre polynomials; Random regression. |
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Thesaurus NAL: |
Dairy cattle. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02289naa a2200289 a 4500
001 2118639
005 2024-02-06
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1111/jbg.12459$2DOI
100 1 $aSILVA, D. A.
245 $aAutoregressive and random regression test-day models for multiple lactations in genetic evaluation of Brazilian Holstein cattle.$h[electronic resource]
260 $c2020
520 $aAutoregressive (AR) and random regression (RR) models were fitted to test-day records from the first three lactations of Brazilian Holstein cattle with the objective of comparing their efficiency for national genetic evaluations. The data comprised 4,142,740 records of milk yield (MY) and somatic cell score (SCS) from 274,335 cows belonging to 2,322 herds. Although heritabilities were similar between models and traits, additive genetic variance estimates using AR were 7.0 (MY) and 22.2% (SCS) higher than those obtained from RR model. On the other hand, residual variances were lower in both traits when estimated through AR model. The rank correlation between EBV obtained from AR and RR models was 0.96 and 0.94 (MY) and 0.97 and 0.95 (SCS), respectively, for bulls (with 10 or more daughters) and cows. Estimated annual genetic gains for bulls (cows) obtained using AR were 46.11 (49.50) kg for MY and -0.019 (-0.025) score for SCS; whereas using RR these values were 47.70 (55.56) kg and -0.022 (-0.028) score. Akaike information criterion was lower for AR in both traits. Although AR model is more parsimonious, RR model assumes genetic correlations different from the unity within and across lactations. Thus, when these correlations are relatively high, these models tend to yield to similar predictions; otherwise, they will differ more and RR model would be theoretically sounder.
650 $aDairy cattle
653 $aAutoregression
653 $aLegendre polynomials
653 $aRandom regression
700 1 $aCOSTA, C. N.
700 1 $aSILVA, A. A.
700 1 $aSILVA, H. T.
700 1 $aLOPES, P. S.
700 1 $aSILVA, F. F.
700 1 $aVERONEZE, R.
700 1 $aTHOMPSON, G.
700 1 $aAGUILAR, I.
700 1 $aCARVALHEIRA, J.
773 $tJournal of Animal Breeding and Genetics$gv. 137, n. 3, p. 305-315, 2020.
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Embrapa Gado de Leite (CNPGL) |
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