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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
26/02/2016 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
IANELLA, P.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
PATRICIA IANELLA, CENARGEN; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; FERNANDA STRINGASSI DE OLIVEIRA, CNPTIA; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
SNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Notas: |
PAG 2016. Pôster P0484. |
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Conteúdo: |
Tambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications. |
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Palavras-Chave: |
Genômica; Polimorfismo de nucleotídeo único. |
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Thesagro: |
Colossoma Macropomum. |
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Thesaurus Nal: |
Genomics; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140249/1/PAG-p0484.pdf
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Marc: |
LEADER 02219nam a2200289 a 4500
001 2038891
005 2020-01-21
008 2016 bl uuuu u00u1 u #d
100 1 $aIANELLA, P.
245 $aSNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries.$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2016
300 $aNão paginado.
500 $aPAG 2016. Pôster P0484.
520 $aTambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications.
650 $aGenomics
650 $aSingle nucleotide polymorphism
650 $aColossoma Macropomum
653 $aGenômica
653 $aPolimorfismo de nucleotídeo único
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aVILLELA, L. C. V.
700 1 $aSILVA, N. M. A. da
700 1 $aYAMAGISHI, M. E. B.
700 1 $aOLIVEIRA, F. S. de
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Trigo. |
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Data corrente: |
30/05/2022 |
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Data da última atualização: |
30/05/2022 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
ANJOS, W. L. dos; RUTHES, E.; TASIOR, D.; LAU, D.; PIVATO, J. |
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Afiliação: |
WÍLLIAN LORDI DOS ANJOS, Fundação ABC; ELDERSON RUTHES, Fundação ABC; DANIELE TASIOR, Fundação ABC; DOUGLAS LAU, CNPT; JULIANO PIVATO, UFRGS. |
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Título: |
Manejo de afídeos vetores de Barley Yellow Dwarf virus na cultura do trigo na região dos Campos Gerais. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
In: REUNIÃO DA COMISSÃO BRASILEIRA DE PESQUISA DE TRIGO E TRITICALE, 14., 2021. Atas e Resumos... Castro: Fundação ABC: Passo Fundo: Biotrigo Genética, 2021. p. 230-234. |
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Idioma: |
Português |
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Palavras-Chave: |
Cereais de inverno; Pulgões; Região Sul. |
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Thesagro: |
Afídeo; Hemíptera; Praga de Planta; Trigo. |
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Thesaurus NAL: |
Aphididae. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1143546/1/Manejo-de-afideos.pdf
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Marc: |
LEADER 00821nam a2200241 a 4500
001 2143546
005 2022-05-30
008 2021 bl uuuu u00u1 u #d
100 1 $aANJOS, W. L. dos
245 $aManejo de afídeos vetores de Barley Yellow Dwarf virus na cultura do trigo na região dos Campos Gerais.$h[electronic resource]
260 $aIn: REUNIÃO DA COMISSÃO BRASILEIRA DE PESQUISA DE TRIGO E TRITICALE, 14., 2021. Atas e Resumos... Castro: Fundação ABC: Passo Fundo: Biotrigo Genética, 2021. p. 230-234.$c2021
650 $aAphididae
650 $aAfídeo
650 $aHemíptera
650 $aPraga de Planta
650 $aTrigo
653 $aCereais de inverno
653 $aPulgões
653 $aRegião Sul
700 1 $aRUTHES, E.
700 1 $aTASIOR, D.
700 1 $aLAU, D.
700 1 $aPIVATO, J.
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Embrapa Trigo (CNPT) |
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