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| Registros recuperados : 181 | |
| 81. |  | ANGELO, P. C. da S.; ARIYOSHI, C.; CAIXETA, E. T.; PEREIRA, L. F. P.; RIBAS, A. F.; SERA, G. H. Variabilidade no domínio LRR de peptídeos codificados em "clusters" homólogos ao SH3 em diferentes genomas de Coffea. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 10., 2019, Vitória, ES. Pesquisa, inovação e sustentabilidade dos cafés do Brasil. Brasília, DF: Embrapa Café, 2019. Título em inglês: LRR domain variability for peptides encoded in gene clusters homologous to the SH3 in different Coffea genomes.| Biblioteca(s): Embrapa Café. |
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| 82. | | BESPALHOK FILHO, J. C.; KOBAYASHI, A. K.; PEREIRA, L. F. P.; HISSANO, Z.; VIEIRA, L. G. E. In vitro adventitious shoot regeneration from sweet orange using thin epicotyl sections. Crop Breeding and Applied Biotechnology, Londrina, v.1, n.1, p.27-34, 2001.| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 84. | | CINTRA, L. A.; SOUZA, T. B. de; PARTEKA, L. M.; BARRETO, L. M.; PEREIRA, L. F. P.; GAETA, M. L.; GUYOT, R.; VANZELA, A. L. L. An 82 bp tandem repeat family typical of 3' non-coding end of Gypsy/TAT LTR retrotransposons is conserved in Coffea spp. pericentromeres. Genome, v.65, n. 3, p. 137-181, 2021. Date of Electronic Publication: 2021 Nov 02.| Biblioteca(s): Embrapa Café. |
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| 85. | | SCHOLZ, M. B. dos S.; KITZBERGER, C. S. G.; PEREIRA, L. F. P.; DAVRIEUX, F.; POT, D.; CHARMETANT, P.; LEROY, T. Application of near infrared spectroscopy for green coffee biochemical phenotyping. Journal of Near Infrared Spectroscopy, v. 22, n. 6, p. 411-421, 2014.| Biblioteca(s): Embrapa Café. |
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| 86. | | IVAMOTO, S. T.; POT, D.; FERREIRA, L. P.; ALVES, L. C.; DOMINGUES, D. S.; VIEIRA, L. G. E.; PEREIRA, L. F. P. Análise in silico da expressão gênica de citocromo p450 relacionada ao metabolismo de diterpenos em Coffea. In.: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá.| Biblioteca(s): Embrapa Café; Embrapa Unidades Centrais. |
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| 87. | | VIDAL, R.; FERREIRA, L. P.; LANNES, S. D.; VIEIRA, L. G. E.; MONDEGO, J.; CARAZZOLLE, M. F.; PEREIRA, G. A.; POT, D.; PEREIRA, L. F. P. Análise in silico e in vivo da diversidade nucleotídica em Coffea ssp. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 6., 2009, Vitória. Resumos expandidos. Brasília, DF: Embrapa Café.| Biblioteca(s): Embrapa Café. |
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| 88. | | ARIYOSHI, C.; IVAMOTO-SUZUKI, S. T.; BABA, V. Y.; TOMA-BRAGHINI, M.; SERA, G. H.; POWELL, A.; CAÇÃO, S. M. B.; CAIXETA, E. T.; PEREIRA, L. F. P. Characterization and functional validation of a genomic region involved in resistance to rust race II in Coffea arábica. Australasian Plant Pathology, 2024. 11 p.| Biblioteca(s): Embrapa Café. |
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| 89. | | SCHOLZ, M. B. dos S.; KITZBERGER, C. S. G.; PAGIATTO, N. F.; PEREIRA, L. F. P.; DAVRIEUX, F.; POT, D.; CHARMETANT, P.; LEROY, T. Chemical composition in wild ethiopian Arabica coffee accessions. Euphytica, v. 209, n. 2 p. 429-438, 2016.| Biblioteca(s): Embrapa Café. |
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| 90. | | DOMINGUES, D. S.; MEDA, A. R.; SANTOS, T. B.; VESPERO, E. B.; SITTA, R. B.; PEREIRA, L. F. P.; VIEIRA, L. G. E. Coffea nutriome: minding the gap among genomics, biotechnology and fertilization practices. In.: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá.| Biblioteca(s): Embrapa Café; Embrapa Unidades Centrais. |
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| 91. | | GEROMEL, C.; FERREIRA, L. P.; GUERREIRO, S. M. C.; CAVALARI, A. A.; POT, D.; PEREIRA, L. F. P.; LEROY, T.; VIEIRA, L. G. E.; MAZZAFERA, P.; MARRACCINI, P. Biochemical and genomic analysis of sucrose metabolism during coffee (Coffea arabica) fruit development. Journal of Experimental Botany, v. 57, n. 12, p. 3243-3258, 2006.| Biblioteca(s): Embrapa Café. |
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| 92. | | KOBAYASHI, A. K.; VIEIRA, L. G. E.; BESPALHOK FILHO, J. C.; LEITE JUNIOR, R. P.; PEREIRA, L. F. P.; MOLINARI, H. B. C.; MARQUES, V. V. Enhanced resistance to citrus canker in transgenic sweet orange expressing the sarcotoxin IA gene. European Journal of Plant Pathology, v. 149, n. 4, p. 865-873, 2017.| Biblioteca(s): Embrapa Agroenergia; Embrapa Café. |
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| 93. | | DIOLA, V.; CAÇÃO, S. M. B.; CAIXETA, E. T.; BRITO, G. G.; ZAMBOLIM, E. M.; PEREIRA, L. F. P.; LOUREIRO, M. E. Genetic and physical mapping of the resistant gene for H. vastatrix race II in Coffea arabica. In: INTERNATIONAL CONFERENCE ON COFFEE SCIENCE, 23. 2010, Bali, Indonesia.| Biblioteca(s): Embrapa Café. |
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| 94. | | SANT'ANA, G. C.; POT, D.; IVAMOTO, S. T.; DOMINGUES, D. S.; SCHOLZ, M. B. B.; LEROY, T.; PEREIRA, L. F. P. Genomic regions associated to lipids and diterpenes contents selected during domestication and breeding of Coffea arabica. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 9., 2017, Foz de Iguaçu. Melhoramento de plantas: projetando o futuro. Maringá, PR: SBMP, 2017. p. 72| Biblioteca(s): Embrapa Café. |
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| 95. | | CARVALHO, K. de; PETKOWICZ, C. L. O.; NAGASHIMA, G. T.; BESPALHOK FILHO, J. C.; VIEIRA, L. G. E.; PEREIRA, L. F. P.; DOMINGUES, D. S. Homeologous genes involved in mannitol synthesis reveal unequal contributions in response to abiotic stress in Coffea arábica. Molecular Genetics and Genomics, v. 289, n. 5, p. 951-963, 2014.| Biblioteca(s): Embrapa Café. |
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| 96. | | SILVA, B. S. R. da; CAÇÃO, S. B.; IVAMOTO, S. T.; SILVA, J. C.; DOMINGUES, D. S.; PEREIRA, L. F. P. Identificação e caracterização de microssatélites de Coffea arabica a partir de dados de sequenciamento de RNA e de BACS. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 8., 2013, Salvador. Sustentabilidade e inclusão Social. Brasília, DF: Embrapa Café, 2013.| Biblioteca(s): Embrapa Café. |
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| 97. | | FERREIRA, R. V.; SANTOS, M. A.; CHARMENTANT, P.; MARRACCINI, P.; LEROY, T.; VIEIRA, L. G. E.; PEREIRA, L. F. P.; POT, D. Identificação rápida de marcadores SSR polimórficos em Coffea arabica. In.: CONGRESSO BRASILEIRO DE GENÉTICA, 56., 2010, Guarujá.| Biblioteca(s): Embrapa Café; Embrapa Unidades Centrais. |
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| 98. | | DIOLA, V.; LOUREIRO, M. E.; BRITO, G. G. de; CAIXETA, E. T.; ZAMBOLIN, E. M.; SAKIYAMA, N. S.; PEREIRA, L. F. P. Construção do mapa genético e físico para um gene de resistência a Hemileia vastatrix em café. In: CONGRESSO BRASILEIRO DE FISIOLOGIA VEGETAL, 12., 2009, Fortaleza. Desafios para produção de alimentos e bioenergia. Fortaleza: SBFV: UFC: Embrapa Agroindústria Tropical, 2009.| Biblioteca(s): Embrapa Algodão. |
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| 99. | | CAÇÃO, S. M. B.; DINIZ, L. E. C.; SILVA. N. V.; VENIKY, F.; ANDRADE, A. C.; PEREIRA, L. F. P.; VIEIRA, L. G. E. Construção de uma biblioteca genômica de cromossomo artificial de bactéria de Coffea arabica. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 5., 2007, Águas de Lindóia, SP. Anais... Brasília, DF: Embrapa Café, 2007. Biotecnologia aplicada à cadeia agroindustrial do café.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 100. | | CAÇÃO, S. M. B.; DINIZ, L. E. C.; SILVA, N. V.; VENIKY, F.; ANDRADE, A. C.; PEREIRA, L. F. P.; VIEIRA, L. G. E. Construção de uma biblioteca genômica de cromossomo artificial de bactéria de Coffea arabica. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 5., 2007, Águas de Lindóia, SP. Anais... Brasília, DF: Embrapa Café, 2007.| Biblioteca(s): Embrapa Café. |
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| Registros recuperados : 181 | |
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Registro Completo
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Biblioteca(s): |
Embrapa Café. |
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Data corrente: |
08/03/2016 |
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Data da última atualização: |
10/03/2016 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
YUYAMA, P. M.; REIS JUNIOR, O.; IVAMOTO, S. T.; DOMINGUES, D. S.; CARAZZOLLE, M. F.; PEREIRA, G. A. G.; CHARMETANT, P.; LEROY, T.; PEREIRA, L. F. P. |
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Afiliação: |
PRISCILA MARY YUYAMA, UEL; OSVALDO REIS JÚNIOR, UNICAMP; SUZANA TIEMI IVAMOTO, UEL/IAPAR; DOUGLAS SILVA DOMINGUES, IAPAR/UNESP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; PIERRE CHARMETANT, CIRAD; THIERRY LEROY, CIRAD; LUIZ FILIPE PROTASIO PEREIRA, SAPC. |
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Título: |
Transcriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
Molecular Genetics and Genomics, v. 291, n. 1, p. 323-336. 2016 |
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Idioma: |
Inglês |
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Conteúdo: |
Studies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthermore, this work will open new avenues for studies into specific genes and pathways in this species, especially related to fruit, and our data have potential value in assisted breeding applications. MenosStudies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthe... Mostrar Tudo |
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Palavras-Chave: |
Differentially expressed genes; Gene annotation; Homeologous; RNA-seq. |
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Thesaurus NAL: |
Coffea. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140757/1/Transcriptome-analysis-in-coffea.pdf
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Marc: |
LEADER 02550naa a2200277 a 4500
001 2040005
005 2016-03-10
008 2016 bl uuuu u00u1 u #d
100 1 $aYUYAMA, P. M.
245 $aTranscriptome analysis in Coffea eugenioides, an Arabica coffee ancestor, reveals differentially expressed genes in leaves and fruits.$h[electronic resource]
260 $c2016
520 $aStudies in diploid parental species of polyploid plants are important to understand their contributions to the formation of plant and species evolution. Coffea eugenioides is a diploid species that is considered to be an ancestor of allopolyploid Coffea arabica together with Coffea canephora. Despite its importance in the evolutionary history of the main economic species of coffee, no study has focused on C. eugenioides molecular genetics. RNA-seq creates the possibility to generate reference transcriptomes and identify coding genes and potential candidates related to important agronomic traits. Therefore, the main objectives were to obtain a global overview of transcriptionally active genes in this species using next generation sequencing and to analyze specific genes that were highly expressed in leaves and fruits with potential exploratory characteristics for breeding and understanding the evolutionary biology of coffee. A de novo assembly generated 36,935 contigs that were annotated using eight databases. We observed a total of ~5000 differentially expressed genes between leaves and fruits. Several genes exclusively expressed in fruits did not exhibit similarities with sequences in any database. We selected ten differentially expressed unigenes in leaves and fruits to evaluate transcriptional profiles using qPCR. Our study provides the first gene catalog for C. eugenioides and enhances the knowledge concerning the mechanisms involved in the C. arabica homeologous. Furthermore, this work will open new avenues for studies into specific genes and pathways in this species, especially related to fruit, and our data have potential value in assisted breeding applications.
650 $aCoffea
653 $aDifferentially expressed genes
653 $aGene annotation
653 $aHomeologous
653 $aRNA-seq
700 1 $aREIS JUNIOR, O.
700 1 $aIVAMOTO, S. T.
700 1 $aDOMINGUES, D. S.
700 1 $aCARAZZOLLE, M. F.
700 1 $aPEREIRA, G. A. G.
700 1 $aCHARMETANT, P.
700 1 $aLEROY, T.
700 1 $aPEREIRA, L. F. P.
773 $tMolecular Genetics and Genomics$gv. 291, n. 1, p. 323-336. 2016
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Embrapa Café (CNPCa) |
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