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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
26/02/2016 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
IANELLA, P.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
PATRICIA IANELLA, CENARGEN; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; FERNANDA STRINGASSI DE OLIVEIRA, CNPTIA; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
SNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Notas: |
PAG 2016. Pôster P0484. |
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Conteúdo: |
Tambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications. |
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Palavras-Chave: |
Genômica; Polimorfismo de nucleotídeo único. |
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Thesagro: |
Colossoma Macropomum. |
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Thesaurus Nal: |
Genomics; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140249/1/PAG-p0484.pdf
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Marc: |
LEADER 02219nam a2200289 a 4500
001 2038891
005 2020-01-21
008 2016 bl uuuu u00u1 u #d
100 1 $aIANELLA, P.
245 $aSNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries.$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2016
300 $aNão paginado.
500 $aPAG 2016. Pôster P0484.
520 $aTambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications.
650 $aGenomics
650 $aSingle nucleotide polymorphism
650 $aColossoma Macropomum
653 $aGenômica
653 $aPolimorfismo de nucleotídeo único
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aVILLELA, L. C. V.
700 1 $aSILVA, N. M. A. da
700 1 $aYAMAGISHI, M. E. B.
700 1 $aOLIVEIRA, F. S. de
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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| Registros recuperados : 4 | |
| 1. |  | GOMES, M. J. C.; INFANTE, R. A.; SILVA, B. P. da; MOREIRA, M. E. de C.; DIAS, D. M.; LOPES, R. de C. S. O.; TOLEDO, R. C. L.; QUEIROZ, V. A. V.; MARTINO, H. S. D. Sorghum extrusion process combined with biofortified sweet potato contributed for high iron bioavailability in Wistar rats. Journal of Cereal Science, London, v. 75, p. 213-219, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 2. | | LOPES, R. de C. S. O.; THEODORO, J. M. V.; SILVA, B. P. da; QUEIROZ, V. A. V.; MOREIRA, M. E. de C.; MANTOVANI, H. C.; HERMSDORFF, H. H.; MARTINO, H. S. D. Synbiotic meal decreases uremic toxins in hemodialysis individuals: a placebo-controlled trial. Food Research International, v. 116, p. 241-248, 2019. Publicado online em 9 ago. 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 3. | | LOPES, R. de C. S. O.; RIBEIRO, P. V. de M.; BALBINO, K. P.; SANTOS, A. de P.; JORGE, M. de P.; THEODORO, J. M. V.; GUERRA, N. N.; WALTER, E. H. M.; CARVALHO, C. W. P. de; QUEIROZ, V. A. V.; HERMSDORFF, H. H. M.; MOREIRA, A. V. B.; RIBEIRO, S. M. R.; MARTINO, H. S. D.; RIBEIRO, A. Q. Consumo de um simbiótico no controle urêmico de portadores de doença renal crônica em hemodiálise. Nutrire, São Paulo, v. 40, p. 643, 2015. Suplemento.
Edição dos resumos do 13º Congresso Nacional da Sociedade Brasileira de Alimentação e Nutrição, São Paulo, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroindústria de Alimentos; Embrapa Milho e Sorgo. |
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| 4. | | LOPES, R. de C. S. O.; LIMA, S. L. L. de; SILVA, B. F. da; TOLEDO, R. C. L.; MOREIRA, M. E de C.; ANUNCIAÇÃO, P. C. de; WALTER, E. H. M.; CARVALHO, C. W. P. de; QUEIROZ, V. A. V.; RIBEIRO, A. Q.; MARTINO, H. S. D. Evaluation of the health benefits of consumption of extruded tannin sorghum with unfermented probiotic milk in individuals with chronic kidney disease. Food Research International, v. 107, p. 629-638, May 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroindústria de Alimentos; Embrapa Milho e Sorgo. |
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| Registros recuperados : 4 | |
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