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163. | | REIS, A.; QUEZADO-DUVAL, A. M.; INOUE-NAGATA, A. K.; ÁVILA, A. C. de; LOPES, C. A. Manejo de doenças em pimentas no Brasil. In: ENCONTRO NACIONAL DO AGRONEGÓCIO PIMENTAS (CAPSICUM spp.), 2.; MOSTRA NACIONAL DE PIMENTAS E PRODUTOS DERIVADOS, 2., 2006, Brasília, DF. Anais... Brasília, DF: Embrapa Hortaliças, 2006. 14 p. CD-ROM. Biblioteca(s): Embrapa Hortaliças. |
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164. | | ALMEIDA, M. M. S.; HOFFMANN, L. V.; BARBOSA, J. C.; ARANHA, S. A.; INOUE-NAGATA, A. K. Malvaceous plants are infected with novel Begomovirus species. In: INTERNATIONAL GEMINIVIRUS SYMPOSIUM, 6.; INTERNATIONAL SSDNA COMPARATIVE VIROLOGY WORKSHOP, 4., 2010, Guanajuato. Resumos... Mexico: [s.n.], 2010. p. 21. Biblioteca(s): Embrapa Algodão. |
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167. | | MACEDO, M. A.; SILVA, J. da; JORGE, M. H. A.; BOITEUX, L. S.; INOUE-NAGATA, A. K. Efeito da aplicação foliar de nutrientes na severidade de sintomas, na produção e na qualidade de sementes de plantas de tomateiro infectadas com o begomovírus Tomato severe rugose virus. Horticultura Brasileira, Brasília, DF, v. 31, p. S3056-S3063, 2014. Suplemento. Edição dos Anais do 53 Congresso Brasileiro de Olericultura, jul. 2014. Biblioteca(s): Embrapa Hortaliças. |
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168. | | NOGUEIRA, I.; FONSECA, M. E. de N.; RESENDE, R. O.; BLAWID, R.; INOUE=NAGATA, A. K.; PEREIRA-CARVALHO, R. C. Diversidade de endossimbiontes em Bemisia tabaci coletadadas no tomateiro e diferentes hospedeiras em localidades do Centro Oeste. Tropical Plant Pathology, Brasília, DF, v. 37, 2012. 1 CD-ROM. Suplemento. Edição do 45º Congresso Brasileiro de Fitopatologia, 2012, Manaus. Resumo 805. Biblioteca(s): Embrapa Hortaliças. |
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169. | | SILVA, M. S.; MARTINS, C. R.; BEZERRA, I.; INOUE-NAGATA, A. K.; AVILA, A. C.; RESENDE, R. O. Diversidade da proteina de movimento NSm de tospovirus e seu possivel envolvimento na interacao virus-hospedeiro. Fitopatologia Brasileira, Brasilia, v.23, p.325, ago. 1998. Resumo. Suplemento. Biblioteca(s): Embrapa Hortaliças. |
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170. | | LIMA, M. F.; SOUZA, K. R. R.; INOUE NAGATA, A. K.; ULHOA, A. B.; FERRAZ, R.; REIFSCHNEIDER, F. J. B. Detection, occurrence and natural incidence of pepper mild mottle virus (PMMoV) in hot peppers in Brazil. In: INTERNATIONAL HORTICULTURAL CONGRESS, 28., 2010, Lisboa. Science and horticulture for people: abstracts. Lisbon: ISHS, 2010. v. 1, p. 269. Resumo T15.214. Biblioteca(s): Embrapa Hortaliças. |
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171. | | QUEZADO-DUVAL, A. M.; INOUE-NAGATA, A. K.; REIS, A.; MONTEIRO, F. P.; PINHEIRO, J. B.; LOPES, C. A. Doenças e seu controle. In: ZAMBOLIM, L.; QUEZADO-DUVAL, A. M. Produção integrada do tomateiro tutorado: subsídios para produção integrada. Viçosa, MG: Universidade Federal de Viçosa, Coordenadoria de Educação Aberta e a Distância, 2022. p. 117-173. Biblioteca(s): Embrapa Hortaliças. |
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172. | | NAGATA, T.; RESENDE, R. de O.; KITAJIMA, E. W.; COSTA, H.; INOUE-NAGATA, A.K.; AVILA, A. C. de. First report of natural occurrence of Zucchini Lethal Chlorosis Tospovirus on cucumber and Chrysanthemum Stem Necrosis Tospovirus on tomato in Brazil. Plant Disease, v.82, n.12, p.1403, Dec. 1998. Biblioteca(s): Embrapa Hortaliças. |
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173. | | DIANESE, E. C.; FONSECA, M. E. N.; BOITEUX, L. S.; INOUE-NAGATA, A. K.; RESENDE, R. O. Evaluation of a primer panel derived from the Sw-5 gene sequence aiming to fingerprint tospovirus susceptible and resistant lines via simple PCR assys. Tropical Plant Pathology, Brasília, DF, v. 33, p. S295, ago. 2008. Suplemento. Resumo VIR 040. Trabalho apresentado no 41. Congresso Brasileiro de Fitopatologia, 41. Annual Meeting of the Brazilian Phytopathological Society, Belo Horizonte, 2008. Biblioteca(s): Embrapa Hortaliças. |
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174. | | FONSECA, M. E. N.; KORMELINK, R.; GOLDBACH, R.; INOUE-NAGATA, A. K.; BOITEUX, L. S.; RESENDE, R. O. Strategies for the development of broad and durable resistance in solanum (secton lycopersicon) against potyvirus and tospovirus. Virus Reviews & Research, São Paulo, v. 14, Supl. 1, p. 220-221, nov. 2009. Suplemento 1. Resumo. Trabalho apresentado no 20. National Meeting of Virology, 2009, Brasília, Distrito Federal, Brasil. Biblioteca(s): Embrapa Hortaliças. |
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179. | | SPADOTTI, D. M. de A.; WASSANO, D. T.; REZENDE, J. A. M.; CAMARGO, L. E. A.; INOUE-NAGATA, A. K. Biological and molecular characterization of Brazilian isolates of Zucchini yellow mosaic virus. Scientia Agricola, Piracicaba, v. 72, n. 2, p. 187-191, Mar./Apr. 2015. Biblioteca(s): Embrapa Hortaliças. |
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180. | | BOITEUX, L. S.; INOUE-NAGATA, A. K.; MENDONÇA, J. L.; ÁVILA, A. C.; GIORDANO, L. B.; FONSECA, M. E. N. Caracterização molecular de um isolado distinto de Begomovirus infectando Physalis angulata. Fitopatologia Brasileira, Brasília, v. 28, p. 247, ago. 2003. Suplemento. Trabalho apresentado no 36º Congresso Brasileiro de Fitopatologia, 2003, Brasília. Resumo. Biblioteca(s): Embrapa Hortaliças. |
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Registro Completo
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Hortaliças. |
Data corrente: |
09/08/2022 |
Data da última atualização: |
11/08/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
B - 1 |
Autoria: |
MARTINS, T. P.; REGO, C. M.; NAKASU, E. Y. T.; FERNANDES, F. R.; INOUE-NAGATA, A. K. |
Afiliação: |
T. P. MARTINS, UNIVERSIDADE DE BRASÍLIA; C. M. REGO, UNIVERSIDADE DE BRASÍLIA; ERICH YUKIO TEMPEL NAKASU, CNPH; FERNANDA RAUSCH FERNANDES, CNPTIA; ALICE KAZUKO INOUE NAGATA, CNPH. |
Título: |
A high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
Acta Horticulturae, v. 1316, p. 99-105, 2021. |
ISSN: |
2406-6168 |
DOI: |
10.17660/ActaHortic.2021.1316.14 |
Idioma: |
Inglês |
Notas: |
Edition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. |
Conteúdo: |
Tomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. MenosTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed a... Mostrar Tudo |
Palavras-Chave: |
HTS; Next Generation Sequencing; Sequenciamento de nova geração; Virome. |
Thesagro: |
Tomate; Vírus. |
Thesaurus NAL: |
Solanum lycopersicum. |
Categoria do assunto: |
-- |
Marc: |
LEADER 03214naa a2200289 a 4500 001 2145363 005 2022-08-11 008 2021 bl uuuu u00u1 u #d 022 $a2406-6168 024 7 $a10.17660/ActaHortic.2021.1316.14$2DOI 100 1 $aMARTINS, T. P. 245 $aA high viral diversity in tomato crops in Brazil is revealed by next generation sequencing analyses.$h[electronic resource] 260 $c2021 500 $aEdition of Proceedings of the VI International Symposium on Tomato Diseases: Managing Tomato Diseases in the Face of Globalization and Climate Change. 520 $aTomato is planted in Brazil mainly for fresh consumption and tomato paste production. Among the various pathogens that infect tomato plants in Brazil, viruses are particularly important due to their high incidence and the resulting losses caused. Diagnosis of viral diseases usually relies on detection methods directed to known viruses and close variants, either by serology or nucleic acid hybridization/ amplification. However, the advent of next generation sequencing (NGS) facilitated a deep analysis of viral populations, which can be used for identification, assembly and discovery of new viruses. Aiming to estimate the viral diversity present in tomato crops from three states of Brazil, five composite leaf samples were analyzed using NGS. The samples referred as Braz (collected in the Federal District, 2015); Ahol, Toca1, and Toca2 (São Paulo State, 2014), and RNY2 (Minas Gerais State, 2013) were submitted to semi-purification of viral particles and RNA extraction before RNA-seq (Illumina). The reads were filtered for quality, the contigs assembled (Velvet algorithm), and submitted to MegaBLAST analysis against a virus reference sequences database. These samples were collected from plants showing symptoms such as mosaic, chlorosis, leaf curling, chlorotic spots, necrosis and stunting. Known viruses belonging to nine genera, Crinivirus, Begomovirus, Tospovirus, Tobravirus, Potyvirus, Tobamovirus, Tymovirus, Potexvirus and Cucumovirus, were detected. Potentially undescribed and unreported viruses in tomatoes, such as an amalgavirus and an ilarvirus, were also detected and are under confirmation. The conclusion was that there is a high virus diversity present in tomato plants in Brazil, making tomato production a challenge to the growers. The crinivirus, Tomato chlorosis virus, was the most frequently found within the samplings, suggesting that it is widespread in the major tomato production areas. Two begomoviruses were detected, implying that this strategy is also useful to detect viruses with a DNA genome. Finally, this technique was particularly convenient to identify the viruses coexisting in tomatoes and to find unknown viruses that may threaten the tomato production in the country. 650 $aSolanum lycopersicum 650 $aTomate 650 $aVírus 653 $aHTS 653 $aNext Generation Sequencing 653 $aSequenciamento de nova geração 653 $aVirome 700 1 $aREGO, C. M. 700 1 $aNAKASU, E. Y. T. 700 1 $aFERNANDES, F. R. 700 1 $aINOUE-NAGATA, A. K. 773 $tActa Horticulturae$gv. 1316, p. 99-105, 2021.
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