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Registros recuperados : 77 | |
41. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PO0249 Biblioteca(s): Embrapa Pesca e Aquicultura. |
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42. | | ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Abstracts... [S.l.: s.n.], 2019. Na publicação: Adhemar Zerlotini. PAG 2019. PO0249. Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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43. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Aquaculture: the big choice! abstracts. [S.l.: s.n.], 2019. p. 182. Biblioteca(s): Embrapa Agricultura Digital. |
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44. | | CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). In: AQUACULTURE, 2019, New Orleans. Abstracts. [S.l.]: Word Aquaculture Society, 2019. Biblioteca(s): Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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45. | | IANELLA, P.; ALBUQUERQUE, M. do S. M.; CAETANO, A. R.; BIAZIO, G. R. de; PAIVA, S. R.; NEPOMUCENO, A. R.; CARVALHO, L. F. R.; MCMANUS, C. M. Genetic diversity and Population Structure of locally adapted horse breeds in Brazil. In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 11., 2018, Auckland, New Zealand. Proceedings... Massey University, 2018. Na publicação: M. S. A. Maués; G. R. Biazio. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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46. | | SILVA, N. M. L.; ALBUQUERQUE, M. do S. M.; CAETANO, A. R.; BIAZIO, G. R. DE; PAIVA, S. R.; MCMANUS, C.; IANELLA, P. Genetic variability of Santa Inês samples stored in the Brazilian Animal Germplasm Biobank (BBGA). In: SIMPOSIO INTERNACIONAL DE RECURSOS GENÉTICOS PARA LAS AMÉRICAS Y EL CARIBE, 11., 2017, Guadalajara. Resúmenes... Guadalajara: [s. n.], 2017. p. 207 Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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47. | | IANELLA, P.; VARELA, E. S.; VILLELA, L. C. V.; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. SNP discovery in three South American freshwater characiformes species by deep sequencing of Reduced Representation Libraries (RRL). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PE0268. PAG 2019. Biblioteca(s): Embrapa Agricultura Digital. |
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48. | | IANELLA, P.; VARELA, E. S.; VILLELA, L. C. V.; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. SNP discovery in three South American freshwater characiformes species by deep sequencing of Reduced Representation Libraries (RRL). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PE0268 Biblioteca(s): Embrapa Pesca e Aquicultura; Embrapa Recursos Genéticos e Biotecnologia. |
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49. | | IANELLA, P.; CAMPOS, T. A. de; PAIVA, S. R.; GUIMARAES, M. F. M.; SILVA, M. V. G. B.; CAETANO, A. R. Prospecção de Polimorfismos de Base Única (SNPs) no gene k-caseina (KCN) na raça Girolando. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE ZOOTECNIA, 47., 2010, Salvador. Empreendedorismo e progresso científico na zootecnia brasileira: anais. Viçosa, MG: Sociedade Brasileira de Zootecnia, 2010. 3 p. Biblioteca(s): Embrapa Gado de Leite; Embrapa Recursos Genéticos e Biotecnologia. |
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50. | | SILVA, N. M. L.; IANELLA, P.; YAMAGISHI, M. E. B.; PAIVA, S. R.; ROCHA, J. L.; TEIXEIRA, A. K.; FARIAS, F. G.; GUERRELHAS, A. C.; CAETANO, A. R. Development and validation of a low-density SNP panel for parentage control and evaluation of genetic diversity of pacific white shrimp (Litopenaeus vannamei). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Abstracts... [S.l.: s.n.], 2019. PE0274. PAG 2019. Biblioteca(s): Embrapa Agricultura Digital. |
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51. | | SILVA, N. M. L.; IANELLA, P.; YAMAGISHI, M. E. B.; PAIVA, S. R.; ROCHA, J. L.; TEIXEIRA, A. K.; FARIAS, F. G.; GUERRELHAS, A. C.; CAETANO, A. R. Development and validation of a low-density SNP panel for parentage control and evaluation of genetic diversity of pacific white shrimp (Litopenaeus vannamei). In: PLANT AND ANIMAL GENOME CONFERENCE, 27., 2019, San Diego. Plant and animal genome abstracts. Livingston, NJ: Scherago, 2019. PE0274. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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52. | | SILVA, N. M. L.; IANELLA, P.; YAMAGISHI, M. E. B.; ROCHA, J. L.; TEIXEIRA, A. K.; FARIAS, F. G.; GUERRELHAS, A. C.; CAETANO, A. R. Development and validation of a low-density SNP panel for paternity and kinship analysis and evaluation of genetic variability and structure of commercial Pacific white shrimp (Litopenaeus vannamei) populations from Brazil. Aquaculture, v. 560, 738540, Nov. 2022. Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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53. | | FACO, O.; PAIVA, S. R.; LOBO, R. N. B.; VILLELA, L. C. V.; IANELLA, P.; CAETANO, A. R.; CAETANO, A. R.; PIMENTEL, C. M. Núcleo de consercação e melhoramento genético da raça Morada Nova: resultados preliminares. In: XIMENES, L. J. F.; MARTINS, G. A.; MORAIS, O. R. de; COSTA, L. S. de A.; NASCIMENTO, J. L. S. do (Coord.). Ciência e tecnologia na pecuária de caprinos e ovinos. Fortaleza: Banco do Nordeste do Brasil, 2010. Cap. 12. p. 311-337. (Série BNB. Ciência e Tecnologia, 5). Biblioteca(s): Embrapa Caprinos e Ovinos. |
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54. | | FACO, O.; PAIVA, S. R.; LOBO, R. N. B.; VILLELA, L. C. V.; MELO NETO, F. V. O.; IANELLA, P.; CAETANO, A. R.; McMANUS, C. P. Núcleo de melhoramento genético participativo de ovinos da raça Morada Nova. In: SIMPOSIO IBEROAMERICANO SOBRE CONSERVACIÓN Y UTILIZACIÓN DE RECURSOS ZOOGENÉTICOS, 11., 2010, João Pessoa. Memorias... João Pessoa: Ed. da UFPB: Instituto Nacional do Semiárido, 2010. 2 f. Biblioteca(s): Embrapa Caprinos e Ovinos. |
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55. | | PAULA, V. G. de; SOUSA, R. S. de; SILVA, R. C. M. R. da; ALVES, E. G.; CAETANO, A. R.; IANELLA, P.; CAMPOS, T. A. de. fim3–24/ptxP-3 genotype is associated to whooping cough outbreak in Brazilian Midwest: The selection of Bordetella pertussis strains driven by vaccine immunization. Infection, Genetics and Evolution, v. 121, 105599, 2024. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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56. | | ALBUQUERQUE, M. do S. M.; RAMOS, A. F.; BIAZIO, G. R. de; IANELLA, P.; PAIVA, S. R.; CASTRO, C. S. P. de. Implementação de requisitos corporativos de qualidade no Banco de DNA e Tecidos Animais do Cenargen. Revista RG News, v. 4, n. 3, p. 97, 2018 Resumo apresentado no CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 5., 2018, Fortaleza. Anais... Fortaleza: Sociedade Brasileira de Recursos Genéticos, 2018. Biblioteca(s): Embrapa Unidades Centrais. |
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57. | | ALBUQUERQUE, M. do S. M.; RAMOS, A. F.; BIAZIO, G. R. de; IANELLA, P.; PAIVA, S. R.; CASTRO, C. S. P. de. Implementação de requisitos corporativos de qualidade no Banco de DNA e Tecidos Animais do Cenargen. Revista RG News, v. 4, n. 3, p. 97, 2018 Resumo apresentado no CONGRESSO BRASILEIRO DE RECURSOS GENÉTICOS, 5., 2018, Fortaleza. Anais... Fortaleza: Sociedade Brasileira de Recursos Genéticos, 2018. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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58. | | PAIVA, D. S.; FONSECA, I.; PINTO, I. S. B.; IANELLA, P.; CAMPOS, T. A.; CAETANO, A. R.; PAIVA, S. R.; SILVA, M. V. G. B.; MARTINS, M. F. Incidence of bovine leukocyte adhesion deficiency, complex vertebral malformation, and deficiency of uridine-5-monophosphate synthase carriers in brazilian girolando cattle. Genetics and Molecular Research, v. 12, n. 3, p. 3186-3192, 2013. Biblioteca(s): Embrapa Gado de Leite; Embrapa Recursos Genéticos e Biotecnologia. |
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59. | | SILVA, N. M. L.; IANELLA, P.; YAMAGISHI, M. E. B.; ROCHA, J. L.; FARIAS, F. A.; GUERRELHAS, A. C.; CAETANO, A. R. Validation of a low-density SNP panel for genetic structure and diversity analysis of Pacific white shrimp (Litopenaeus vannamei). In: BRAZILIAN CONGRESS OF GENETICS, 66.; SIMPÓSIO DE CITOGENÉTICA E GENÉTICAS DE PEIXES, 19.; REUNIÃO DE GENÉTICA DE MICRORGANISMOS, 32.; CONGRESSO LATINO-AMERICANO DE GENÉTICA PARA CONSERVAÇÃO, 2., 2021. [Abstracts]. Ribeirão Preto: Sociedade Brasileira de Genética, 2021. p. 281. Evento online. Biblioteca(s): Embrapa Agricultura Digital; Embrapa Recursos Genéticos e Biotecnologia. |
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60. | | BIAZIO, G. R. de; ALBUQUERQUE, M. do S. M.; RAMOS, A. F.; CASTRO, S. T. R.; EGITO, A. A. do; PAIVA, S. R.; IANELLA, P.; MARIANTE, A. da S. Banco de DNA e Tecidos Animal: quantitativo do material estocado até julho de 2015. In: SIMPÓSIO DE RECURSOS GENÉTICOS PARA AMÉRICA LATINA E O CARIBE, 10., 2015, Bento Gonçalves. Anais... Bento Gonçalves: Aptor Software, 2015. p. 197. Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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Registros recuperados : 77 | |
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Registro Completo
Biblioteca(s): |
Embrapa Pesca e Aquicultura. |
Data corrente: |
18/04/2016 |
Data da última atualização: |
18/04/2016 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. |
Afiliação: |
FRANCISCO PEREIRA LOBO, CNPTIA; LEANDRO CARRIJO CINTRA, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; PATRICIA IANELLA, CENARGEN; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
Título: |
Genome sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s. n.], 2016. |
Páginas: |
Não paginado. |
Idioma: |
Inglês |
Notas: |
PAG 2016. Pôster P0481. |
Conteúdo: |
The South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities. MenosThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource ... Mostrar Tudo |
Palavras-Chave: |
Bioinformática; Genômica; Sequenciamento de genoma. |
Thesagro: |
Peixe. |
Thesaurus NAL: |
Bioinformatics; Genome assembly; Genomics; Sequence analysis. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140246/1/PAG-p0481.pdf
|
Marc: |
LEADER 02509naa a2200325 a 4500 001 2043575 005 2016-04-18 008 2016 bl uuuu u00u1 u #d 100 1 $aLOBO, F. P. 245 $aGenome sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer).$h[electronic resource] 260 $c2016 300 $aNão paginado. 500 $aPAG 2016. Pôster P0481. 520 $aThe South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. Recent efforts to domesticate and raise the species in aquaculture systems has led to >10-fold production increases in the last decade. Current production levels are >15,000mt/year. Recently stablished initiatives to structure genetic improvement programs for increasing productivity-associated traits could greatly benefit from using genomic tools for broodstock management and assisted genetic evaluations and breeding. Multiple shotgun libraries with two different insert sizes and multiple Nextera mate pair libraries with three different sizes were sequenced (2x160bps) with Illumina HiSeq2000 technology. A total of 124.8Gbp quality-filtered nucleotides were sequenced which amount to 85x mean genome coverage, considering previously published information (C-value = 1.12pg = 1.095Gbp). Initial sequence assembly was performed with SOAPdenovo and generated 686.171 scaffolds spanning 1.41 Gbp (N50 scaffold length: 908Kbp, L50 scaffold count: 420). Gene model prediction is underway with MAKER2 using as extrinsic evidence protein and EST data from phylogenetically related taxa. This represents the first report of a draft genome sequence for this species, which will be a valuable resource for basic biology studies, and marker detection/selection for use in genetic improvement and resource conservation activities. 650 $aBioinformatics 650 $aGenome assembly 650 $aGenomics 650 $aSequence analysis 650 $aPeixe 653 $aBioinformática 653 $aGenômica 653 $aSequenciamento de genoma 700 1 $aCINTRA, L. C. 700 1 $aVARELA, E. S. 700 1 $aALVES, A. L. 700 1 $aSILVA, N. M. A. da 700 1 $aIANELLA, P. 700 1 $aPAIVA, S. R. 700 1 $aCAETANO, A. R. 773 $tIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.$gn.], 2016.
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Embrapa Pesca e Aquicultura (CNPASA) |
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