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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
26/02/2016 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
IANELLA, P.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; YAMAGISHI, M. E. B.; OLIVEIRA, F. S. de; PAIVA, S. R.; CAETANO, A. R. |
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Afiliação: |
PATRICIA IANELLA, CENARGEN; EDUARDO SOUSA VARELA, CNPASA; ANDERSON LUIS ALVES, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; NAIARA MILAGRES AUGUSTO DA SILVA, CENARGEN; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; FERNANDA STRINGASSI DE OLIVEIRA, CNPTIA; SAMUEL REZENDE PAIVA, SRI; ALEXANDRE RODRIGUES CAETANO, CENARGEN. |
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Título: |
SNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
In: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.], 2016. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Notas: |
PAG 2016. Pôster P0484. |
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Conteúdo: |
Tambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications. |
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Palavras-Chave: |
Genômica; Polimorfismo de nucleotídeo único. |
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Thesagro: |
Colossoma Macropomum. |
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Thesaurus Nal: |
Genomics; Single nucleotide polymorphism. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/140249/1/PAG-p0484.pdf
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Marc: |
LEADER 02219nam a2200289 a 4500
001 2038891
005 2020-01-21
008 2016 bl uuuu u00u1 u #d
100 1 $aIANELLA, P.
245 $aSNP discovery in the South American freshwater fish tambaqui (Colossoma macropomum) by deep sequencing of reduced representation libraries.$h[electronic resource]
260 $aIn: PLANT & ANIMAL GENOME CONFERENCE, 24., 2016, San Diego, CA. [Abstracts...]. San Diego: [s.n.]$c2016
300 $aNão paginado.
500 $aPAG 2016. Pôster P0484.
520 $aTambaqui is the most important native fresh water fish species cultured in Brazil, with current yearly production levels exceeding 200.000mt. Efforts to structure genetic improvement programs for increasing productivity are recent and will greatly benefit from the use of genomic tools for broodstock management and assisted genetic evaluations and breeding. Recent efforts have produced a draft genome sequence for this species. Reduced representation libraries of varying fragment sizes were produced with bulked DNA samples and sequenced with 2x160bp Illumina protocols to produce >720million reads. Generated reads were aligned with the draft reference genome sequence using BWA and SNP discovery was performed using Freebayes. An estimated 12% of the tambaqui genome was sequenced with a depth of >100 reads. A total of 993.935 SNPs were observed with read depths >60 (median: 438) and minor allele frequencies >0.05 (MAF 0.05-0.15: 94.102 SNPs; 0.15-0.25: 326.575; 0.25-0.35: 255.967; 0.35-0.45: 215.054; 0.45-0.50: 102.237).This represents the first report of an extensive effort to identify SNP markers for this species and will be a valuable source of information for designing marker panels with varying applications.
650 $aGenomics
650 $aSingle nucleotide polymorphism
650 $aColossoma Macropomum
653 $aGenômica
653 $aPolimorfismo de nucleotídeo único
700 1 $aVARELA, E. S.
700 1 $aALVES, A. L.
700 1 $aVILLELA, L. C. V.
700 1 $aSILVA, N. M. A. da
700 1 $aYAMAGISHI, M. E. B.
700 1 $aOLIVEIRA, F. S. de
700 1 $aPAIVA, S. R.
700 1 $aCAETANO, A. R.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
06/04/2004 |
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Data da última atualização: |
27/07/2007 |
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Autoria: |
OYA, T.; NEPOMUCENO, A. L.; NEUMAIER, N.; FARIAS, J, R, B.; TOBITA, S.; ITO, O. |
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Título: |
Evaluation and characterization of drought tolerance among brazilian soybean cultivars in the field. |
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Ano de publicação: |
2004 |
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Fonte/Imprenta: |
In: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004. |
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Páginas: |
p. 185. |
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Série: |
(Embrapa Soja. Documentos, 228). |
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Idioma: |
Inglês |
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Notas: |
Editado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi. |
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Conteúdo: |
Drought is one of the major constraints for soybean production in Brazil. Drought stress treatments with rain-out shelters were applied for one month period after the first flowering to evaluate drought tolerance of ten Brazilian soybean cultivars based on seed yield over two growing seasons in the field of Embrapa Soybean in Londrina, PR, Brazil. Drought stress reduced seed yield. Cultivar differences in drought tolerance on the basis of seed yield were found, and the yield ranking among cultivars was fairly stable across two years. Cultivars with higher drought tolerance had a characteristic to maintain their crop growth rate (CGR) higher during the drought stress period compared to other cultivars. They also maintained larger leaf area during the stress period. Reproductive development was retarded by the drought stress, however, the cultivars with higher tolerance tended to retard less. The information obtained in this research can be used for breeding drought-tolerant cultivars or selecting the diverse germplasm of soybean cultivars. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02025naa a2200217 a 4500
001 1466795
005 2007-07-27
008 2004 bl uuuu u00u1 u #d
100 1 $aOYA, T.
245 $aEvaluation and characterization of drought tolerance among brazilian soybean cultivars in the field.
260 $c2004
300 $ap. 185.
490 $a(Embrapa Soja. Documentos, 228).
500 $aEditado por Flávio Moscardi, Clara Beatriz Hoffmann-Campo, Odilon Ferreira Saraiva, Paulo Roberto Galerani, Francisco Carlos Krzyzanowski, Mercedes Concordia Carrão-Panizzi.
520 $aDrought is one of the major constraints for soybean production in Brazil. Drought stress treatments with rain-out shelters were applied for one month period after the first flowering to evaluate drought tolerance of ten Brazilian soybean cultivars based on seed yield over two growing seasons in the field of Embrapa Soybean in Londrina, PR, Brazil. Drought stress reduced seed yield. Cultivar differences in drought tolerance on the basis of seed yield were found, and the yield ranking among cultivars was fairly stable across two years. Cultivars with higher drought tolerance had a characteristic to maintain their crop growth rate (CGR) higher during the drought stress period compared to other cultivars. They also maintained larger leaf area during the stress period. Reproductive development was retarded by the drought stress, however, the cultivars with higher tolerance tended to retard less. The information obtained in this research can be used for breeding drought-tolerant cultivars or selecting the diverse germplasm of soybean cultivars.
700 1 $aNEPOMUCENO, A. L.
700 1 $aNEUMAIER, N.
700 1 $aFARIAS, J, R, B.
700 1 $aTOBITA, S.
700 1 $aITO, O.
773 $tIn: WORLD SOYBEAN RESEARCH CONFERENCE, 7.; INTERNATIONAL SOYBEAN PROCESSING AND UTILIZATION CONFERENCE, 4.; CONGRESSO BRASILEIRO DE SOJA, 3., 2004, Foz do Iguassu. Abstracts of contributed papers and posters. Londrina: Embrapa Soybean, 2004.
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