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Registro Completo |
Biblioteca(s): |
Embrapa Gado de Corte. |
Data corrente: |
10/11/2017 |
Data da última atualização: |
17/04/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
SALGADO, L. R.; LIMA, R.; SANTOS, B. F. dos; SHIRAKAWA, K. T.; VILELA, M. de M.; ALMEIDA, N. F.; PEREIRA, R. M.; NEPOMUCENO, A. L.; CHIARI, L. |
Afiliação: |
LEONARDO RIPPEL SALGADO, Embrapa Beef Cattle, Campo Grande, Mato Grosso do Sul, Brazil; RODOLPHO LIMA, Federal University of Grande Dourados, Dourados, Mato Grosso do Sul, Brazil; BRUNO FERREIRA DOS SANTOS, Federal University of Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil; KARINA TAMIE SHIRAKAWA, Federal University of Grande Dourados, Dourados, Mato Grosso do Sul, Brazil; MARIANE DE MENDONCA VILELA, CNPGC; NALVO FRANCO ALMEIDA, Federal University of Mato Grosso do Sul, Campo Grande, Mato Grosso do Sul, Brazil; RODRIGO MATHEUS PEREIRA, Federal University of Grande Dourados, Dourados, Mato Grosso do Sul, Brazil; ALEXANDRE LIMA NEPOMUCENO, CNPSO; LUCIMARA CHIARI, CNPGC. |
Título: |
De novo RNA sequencing and analysis of the transcriptome of signalgrass (Urochloa decumbens) roots exposed to aluminum. |
Ano de publicação: |
2017 |
Fonte/Imprenta: |
Plant Growth Regulation, v. 83, n. 1, p. 157-170, 2017. |
DOI: |
10.1007/s10725-017-0291-2 |
Idioma: |
Inglês |
Conteúdo: |
Acidic soils occupy a vast area in the world, and the aluminum (Al) in these soils can directly interact with plant cells and tissues to inhibit their growth and reduce yields. The signalgrass Urochloa decumbens cv. Basilisk (syn. Brachiaria decumbens cv. Basilisk), a widely sown tropical forage grass, is recognized for its high productivity under intensive use, vigorous growth, ease of establishment, and good forage value throughout the year, as well as its exceptional adaptation to infertile acid soils. We sequenced the transcriptome from roots of U. decumbens cv. Basilisk under two conditions, with and without Al, using Illumina paired-end sequencing technology and performed de novo assembly of those reads, which yielded 164,920 transcripts. Of these transcripts, 113,918 were assigned a putative protein function through comparisons with different gene set databases. Additionally, 13,375 simple sequence repeat (SSR) markers were identified. Digital gene expression analyses were conducted to identify 6698 differentially expressed genes between treatments, revealing a great differences in the root transcriptional landscape when exposed to aluminum. An extensive annotation of the differentially expressed genes (DEGs), made possible to identify several transcripts with putative functions correlated to aluminum exposure, most belonging to vesicle transportation, cell wall modifications and metal handling ontologies. In this work, abundant, high-quality transcripts were obtained, providing a reference platform for future biotechnological studies and breeding programs for this species and its close relatives. MenosAcidic soils occupy a vast area in the world, and the aluminum (Al) in these soils can directly interact with plant cells and tissues to inhibit their growth and reduce yields. The signalgrass Urochloa decumbens cv. Basilisk (syn. Brachiaria decumbens cv. Basilisk), a widely sown tropical forage grass, is recognized for its high productivity under intensive use, vigorous growth, ease of establishment, and good forage value throughout the year, as well as its exceptional adaptation to infertile acid soils. We sequenced the transcriptome from roots of U. decumbens cv. Basilisk under two conditions, with and without Al, using Illumina paired-end sequencing technology and performed de novo assembly of those reads, which yielded 164,920 transcripts. Of these transcripts, 113,918 were assigned a putative protein function through comparisons with different gene set databases. Additionally, 13,375 simple sequence repeat (SSR) markers were identified. Digital gene expression analyses were conducted to identify 6698 differentially expressed genes between treatments, revealing a great differences in the root transcriptional landscape when exposed to aluminum. An extensive annotation of the differentially expressed genes (DEGs), made possible to identify several transcripts with putative functions correlated to aluminum exposure, most belonging to vesicle transportation, cell wall modifications and metal handling ontologies. In this work, abundant, high-quality transcripts were obtained... Mostrar Tudo |
Palavras-Chave: |
Molecular markers; RNA sequencing; Urochloa genus. |
Thesagro: |
Brachiaria Decumbens. |
Thesaurus Nal: |
Aluminum. |
Categoria do assunto: |
-- |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/166583/1/De-novo-RNA-sequencing-and-analysis.pdf
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Marc: |
LEADER 02506naa a2200289 a 4500 001 2079489 005 2018-04-17 008 2017 bl uuuu u00u1 u #d 024 7 $a10.1007/s10725-017-0291-2$2DOI 100 1 $aSALGADO, L. R. 245 $aDe novo RNA sequencing and analysis of the transcriptome of signalgrass (Urochloa decumbens) roots exposed to aluminum.$h[electronic resource] 260 $c2017 520 $aAcidic soils occupy a vast area in the world, and the aluminum (Al) in these soils can directly interact with plant cells and tissues to inhibit their growth and reduce yields. The signalgrass Urochloa decumbens cv. Basilisk (syn. Brachiaria decumbens cv. Basilisk), a widely sown tropical forage grass, is recognized for its high productivity under intensive use, vigorous growth, ease of establishment, and good forage value throughout the year, as well as its exceptional adaptation to infertile acid soils. We sequenced the transcriptome from roots of U. decumbens cv. Basilisk under two conditions, with and without Al, using Illumina paired-end sequencing technology and performed de novo assembly of those reads, which yielded 164,920 transcripts. Of these transcripts, 113,918 were assigned a putative protein function through comparisons with different gene set databases. Additionally, 13,375 simple sequence repeat (SSR) markers were identified. Digital gene expression analyses were conducted to identify 6698 differentially expressed genes between treatments, revealing a great differences in the root transcriptional landscape when exposed to aluminum. An extensive annotation of the differentially expressed genes (DEGs), made possible to identify several transcripts with putative functions correlated to aluminum exposure, most belonging to vesicle transportation, cell wall modifications and metal handling ontologies. In this work, abundant, high-quality transcripts were obtained, providing a reference platform for future biotechnological studies and breeding programs for this species and its close relatives. 650 $aAluminum 650 $aBrachiaria Decumbens 653 $aMolecular markers 653 $aRNA sequencing 653 $aUrochloa genus 700 1 $aLIMA, R. 700 1 $aSANTOS, B. F. dos 700 1 $aSHIRAKAWA, K. T. 700 1 $aVILELA, M. de M. 700 1 $aALMEIDA, N. F. 700 1 $aPEREIRA, R. M. 700 1 $aNEPOMUCENO, A. L. 700 1 $aCHIARI, L. 773 $tPlant Growth Regulation$gv. 83, n. 1, p. 157-170, 2017.
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Registro original: |
Embrapa Gado de Corte (CNPGC) |
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Registro Completo
Biblioteca(s): |
Embrapa Semiárido. |
Data corrente: |
21/08/2001 |
Data da última atualização: |
05/05/2022 |
Tipo da produção científica: |
Resumo em Anais de Congresso |
Autoria: |
DRUMOND, M. A.; LIMA, P. C. F.; MARANGON, L. C. |
Afiliação: |
MARCOS ANTONIO DRUMOND, CPATSA; PAULO CESAR FERNANDES LIMA, CPATSA. |
Título: |
Fenologia de algumas especies arboreas nativas da regiao semi-arida do Nordeste brasileiro. |
Ano de publicação: |
2001 |
Fonte/Imprenta: |
In: CONGRESSO NACIONAL DE BOTANICA, 52.; REUNIAO NORDESTINA DE BOTANICA, 24., 2001, Joao Pessoa. Resumos... Joao Pessoa: SBB: UFPB, 2001. |
Páginas: |
p. 171-172. |
Idioma: |
Português |
Conteúdo: |
O objetivo deste trabalho é fornecer dados que contribuam para avaliar a quantida-de de sementes de espécies florestais nativas da caatinga a ser produzida a fim de facilitar o planejamento de um empreendimento florestal. |
Palavras-Chave: |
Especie arborea; Forest; Species. |
Thesagro: |
Caatinga; Fenologia; Floresta. |
Thesaurus NAL: |
phenology. |
Categoria do assunto: |
K Ciência Florestal e Produtos de Origem Vegetal |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/132194/1/8944-1.pdf
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Marc: |
LEADER 00926nam a2200229 a 4500 001 1134314 005 2022-05-05 008 2001 bl uuuu u00u1 u #d 100 1 $aDRUMOND, M. A. 245 $aFenologia de algumas especies arboreas nativas da regiao semi-arida do Nordeste brasileiro. 260 $aIn: CONGRESSO NACIONAL DE BOTANICA, 52.; REUNIAO NORDESTINA DE BOTANICA, 24., 2001, Joao Pessoa. Resumos... Joao Pessoa: SBB: UFPB$c2001 300 $ap. 171-172. 520 $aO objetivo deste trabalho é fornecer dados que contribuam para avaliar a quantida-de de sementes de espécies florestais nativas da caatinga a ser produzida a fim de facilitar o planejamento de um empreendimento florestal. 650 $aphenology 650 $aCaatinga 650 $aFenologia 650 $aFloresta 653 $aEspecie arborea 653 $aForest 653 $aSpecies 700 1 $aLIMA, P. C. F. 700 1 $aMARANGON, L. C.
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