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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
31/01/2018 |
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Data da última atualização: |
21/01/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
CHUD, T. C. S.; BICKHART, D. M.; ZERLOTINI NETO, A.; COLE, J. B.; SILVA, M. V. G. B.; MUNARI, D. P. |
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Afiliação: |
TATIANE C. S. CHUD, FCAV/Unesp; DEREK M. BICKHART, FCAV/Unesp; ADHEMAR ZERLOTINI NETO, CNPTIA; JOHN B. COLE, Usda; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; DANÍSIO P. MUNARI, FCAV/Unesp. |
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Título: |
Copy number variation in dairy cattle using next-generation sequencing. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
In: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Abstracts... [S.l.: s.n.], 2018. |
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Páginas: |
1 p. |
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Idioma: |
Inglês |
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Notas: |
PAG 2018. P0490. Na publicação: Adhemar Zerlotini, Marcos Vinicius B. da Silva. |
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Conteúdo: |
Gene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future selective breeding. MenosGene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future ... Mostrar Tudo |
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Palavras-Chave: |
Copy number variants. |
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Thesagro: |
Gado. |
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Thesaurus Nal: |
Cattle; Composite breeds. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/171991/1/PL-CopyNumber-PAGXXVI.pdf
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Marc: |
LEADER 02304nam a2200241 a 4500
001 2086860
005 2020-01-21
008 2018 bl uuuu u00u1 u #d
100 1 $aCHUD, T. C. S.
245 $aCopy number variation in dairy cattle using next-generation sequencing.$h[electronic resource]
260 $aIn: PLANT AND ANIMAL GENOME CONFERENCE, 26., 2018, San Diego. Abstracts... [S.l.: s.n.]$c2018
300 $a1 p.
500 $aPAG 2018. P0490. Na publicação: Adhemar Zerlotini, Marcos Vinicius B. da Silva.
520 $aGene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking. In order to provide a basis for future association studies, we sought to identify CNV regions (CNVRs) within the Girolando composite breed resulting from a mating of the Holstein (taurine) and Gir (indicine) breeds. A read depth method was performed using CNVnator software on NGS data from two Girolando, two Gir and ten Holstein bulls. The individual CNVs were merged into CNVRs based on genomic regions overlapping by at least 1 bp. In total, we identified a composite of 1,286 CNVRs (520 deletions, 255 duplications, 511 mixed) on the genomes of all samples. We observed 34 CNVRs (nine deletions, 25 mixed) in common (overlapping > 50%) only between Girolando and Holstein and 181 CNVRs (20 deletions, 21 duplications,140 mixed) only in Girolando and Gir, suggesting parent-of-origin inheritance from Holstein and Gir cattle, respectively. One of these Holstein-specific CNVRs intersected with the interleukin 6 family cytokine (LIF) gene which is linked to fat production and fertility traits in Holstein. Genes related to disease resistance (e.g. the CD4 gene) also coincided with CNVRs present only in Gir and Girolando cattle suggesting an indicine origin for the CNV. These results showed evidence of specific CNVRs shared by Girolando and purebred breeds which may be targeted for future selective breeding.
650 $aCattle
650 $aComposite breeds
650 $aGado
653 $aCopy number variants
700 1 $aBICKHART, D. M.
700 1 $aZERLOTINI NETO, A.
700 1 $aCOLE, J. B.
700 1 $aSILVA, M. V. G. B.
700 1 $aMUNARI, D. P.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Cerrados. |
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Data corrente: |
28/10/2004 |
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Data da última atualização: |
28/10/2009 |
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Autoria: |
CARVALHO JÚNIOR, O. A. de; MARTINS, E. de S.; GUIMARÃES, R. F.; CARVALHO, A. P. F. de. |
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Título: |
Compartimentação geomorfológica do Parque Nacional da Chapada dos Veadeiros baseada em técnicas de geoprocessamento. |
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Ano de publicação: |
2001 |
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Fonte/Imprenta: |
Planaltina, DF: Embrapa Cerrados, 2001. |
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Páginas: |
20 p. |
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Série: |
(Embrapa Cerrados. Documentos, 34). |
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Idioma: |
Português |
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Conteúdo: |
ABSTRACT: The necessity of creating a main plan for national parks is necessary for the technique's improvement for a better understanding of the environmental factors thar interfere in the conservation of these units. In this context, image processing techniques are important tools in this characterization. In this paper, we describe the use of the terrain Digital Elevation Model (DEM) as a tool for the description of the geological and geomorphological's characteristics from the Chapada dos Veadeiros National park, that has 60,000 ha and it is located in Cavalcante town and Alto Paraíso de Goiás town (GO). By the visual analysis of the DEM is very clear the relief forms that furnish a strong aid to the understanding of the distribuition of the geomorphological and geological units and indirectly of the vegetation. With the use of the maps from the DEM such as the hypsometric map, slope and aspect it is possible to formulate na evolution of the geomorphological process that formed the relief. To the preparation of the DEM it is necessary to organize three basic procedures: a) contour curve's edition (AutoCAD); b) AutoCAD's data conversion into the IDRISI; c) contour curve's interpolation. The Digital Elevation Model was generated in a 30m's resolution to be compatible with the satelite's image. As a result, it was observed that the geomorphological and geological's interpretation were largely facilitaded by the DEM's use, because of a strong co-relation observed among the interpreted features in the DEM and geological and geomorphological's characteristics of the area. MenosABSTRACT: The necessity of creating a main plan for national parks is necessary for the technique's improvement for a better understanding of the environmental factors thar interfere in the conservation of these units. In this context, image processing techniques are important tools in this characterization. In this paper, we describe the use of the terrain Digital Elevation Model (DEM) as a tool for the description of the geological and geomorphological's characteristics from the Chapada dos Veadeiros National park, that has 60,000 ha and it is located in Cavalcante town and Alto Paraíso de Goiás town (GO). By the visual analysis of the DEM is very clear the relief forms that furnish a strong aid to the understanding of the distribuition of the geomorphological and geological units and indirectly of the vegetation. With the use of the maps from the DEM such as the hypsometric map, slope and aspect it is possible to formulate na evolution of the geomorphological process that formed the relief. To the preparation of the DEM it is necessary to organize three basic procedures: a) contour curve's edition (AutoCAD); b) AutoCAD's data conversion into the IDRISI; c) contour curve's interpolation. The Digital Elevation Model was generated in a 30m's resolution to be compatible with the satelite's image. As a result, it was observed that the geomorphological and geological's interpretation were largely facilitaded by the DEM's use, because of a strong co-relation observed among the i... Mostrar Tudo |
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Palavras-Chave: |
Brasil; Geoprocessamento; Geoprocessing; Georpocessamento; Goiás; Mapeamento; Mapping; Parque Nacional da Chapada dos Veadeiros. |
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Thesagro: |
Cerrado; Geomorfologia; Sensoriamento Remoto; Sistema de Informação Geográfica; Solo. |
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Thesaurus NAL: |
Brazil; geographic information systems; geomorphology; remote sensing; soil. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/CPAC-2009/25013/1/doc_34.pdf
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Marc: |
LEADER 02718nam a2200385 a 4500
001 1568005
005 2009-10-28
008 2001 bl uuuu u0uu1 u #d
100 1 $aCARVALHO JÚNIOR, O. A. de
245 $aCompartimentação geomorfológica do Parque Nacional da Chapada dos Veadeiros baseada em técnicas de geoprocessamento.
260 $aPlanaltina, DF: Embrapa Cerrados$c2001
300 $a20 p.
490 $a(Embrapa Cerrados. Documentos, 34).
520 $aABSTRACT: The necessity of creating a main plan for national parks is necessary for the technique's improvement for a better understanding of the environmental factors thar interfere in the conservation of these units. In this context, image processing techniques are important tools in this characterization. In this paper, we describe the use of the terrain Digital Elevation Model (DEM) as a tool for the description of the geological and geomorphological's characteristics from the Chapada dos Veadeiros National park, that has 60,000 ha and it is located in Cavalcante town and Alto Paraíso de Goiás town (GO). By the visual analysis of the DEM is very clear the relief forms that furnish a strong aid to the understanding of the distribuition of the geomorphological and geological units and indirectly of the vegetation. With the use of the maps from the DEM such as the hypsometric map, slope and aspect it is possible to formulate na evolution of the geomorphological process that formed the relief. To the preparation of the DEM it is necessary to organize three basic procedures: a) contour curve's edition (AutoCAD); b) AutoCAD's data conversion into the IDRISI; c) contour curve's interpolation. The Digital Elevation Model was generated in a 30m's resolution to be compatible with the satelite's image. As a result, it was observed that the geomorphological and geological's interpretation were largely facilitaded by the DEM's use, because of a strong co-relation observed among the interpreted features in the DEM and geological and geomorphological's characteristics of the area.
650 $aBrazil
650 $ageographic information systems
650 $ageomorphology
650 $aremote sensing
650 $asoil
650 $aCerrado
650 $aGeomorfologia
650 $aSensoriamento Remoto
650 $aSistema de Informação Geográfica
650 $aSolo
653 $aBrasil
653 $aGeoprocessamento
653 $aGeoprocessing
653 $aGeorpocessamento
653 $aGoiás
653 $aMapeamento
653 $aMapping
653 $aParque Nacional da Chapada dos Veadeiros
700 1 $aMARTINS, E. de S.
700 1 $aGUIMARÃES, R. F.
700 1 $aCARVALHO, A. P. F. de
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Embrapa Cerrados (CPAC) |
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