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![](/consulta/web/img/deny.png) | Acesso ao texto completo restrito à biblioteca da Embrapa Suínos e Aves. Para informações adicionais entre em contato com cnpsa.biblioteca@embrapa.br. |
Registro Completo |
Biblioteca(s): |
Embrapa Suínos e Aves. |
Data corrente: |
28/11/2019 |
Data da última atualização: |
06/12/2019 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
MOREIRA, G. C. M.; POLETI, M. D.; PÉRTILLE, F.; BOSCHIERO, C.; CESAR, A. S. M.; GODOY, T. F.; LEDUR, M. C.; REECY, J. M.; GARRICK, D. J.; COUTINHO, L. L. |
Afiliação: |
GABRIEL COSTA MONTEIRO MOREIRA, USP; USP; USP; CLARISSA BOSCHIERO, USP; ALINE SILVA MELLO CESAR, USP; THAIS FERNANDA GODOY, USP; MONICA CORREA LEDUR, CNPSA; JAMES M. REECY, USP; DORIAN J. GARRICK, USP; LUIZ LEHMANN COUTINHO, USP. |
Título: |
Unraveling genomic associations with feed efficiency and body weight traits in chickens through an integrative approach. |
Ano de publicação: |
2019 |
Fonte/Imprenta: |
BMC Genetics, v. 20, n. 83, 2019. |
Idioma: |
Inglês |
Conteúdo: |
Abstract Background: Feed efficiency and growth rate have been targets for selection to improve chicken production. The incorporation of genomic tools may help to accelerate selection. We genotyped 529 individuals using a high-density SNP chip (600 K, Affymetrix®) to estimate genomic heritability of performance traits and to identify genomic regions and their positional candidate genes associated with performance traits in a Brazilian F2 Chicken Resource population. Regions exhibiting selection signatures and a SNP dataset from resequencing were integrated with the genomic regions identified using the chip to refine the list of positional candidate genes and identify potential causative mutations. Results: Feed intake (FI), feed conversion ratio (FC), feed efficiency (FE) and weight gain (WG) exhibited low genomic heritability values (i.e. from 0.0002 to 0.13), while body weight at hatch (BW1), 35 days-of-age (BW35), and 41 days-of-age (BW41) exhibited high genomic heritability values (i.e. from 0.60 to 0.73) in this F2 population. Twenty unique 1-Mb genomic windows were associated with BW1, BW35 or BW41, located on GGA1?4, 6?7, 10, 14, 24, 27 and 28. Thirty-eight positional candidate genes were identified within these windows, and three of them overlapped with selection signature regions. Thirteen predicted deleterious and three high impact sequence SNPs in these QTL regions were annotated in 11 positional candidate genes related to osteogenesis, skeletal muscle development, growth, energy metabolism and lipid metabolism, which may be associated with body weight in chickens. Conclusions: The use of a high-density SNP array to identify QTL which were integrated with whole genome sequence signatures of selection allowed the identification of candidate genes and candidate causal variants. One novel QTL was detected providing additional information to understand the genetic architecture of body weight traits. We identified QTL for body weight traits, which were also associated with fatness in the same population. Our findings form a basis for further functional studies to elucidate the role of specific genes in regulating body weight and fat deposition in chickens, generating useful information for poultry breeding programs. MenosAbstract Background: Feed efficiency and growth rate have been targets for selection to improve chicken production. The incorporation of genomic tools may help to accelerate selection. We genotyped 529 individuals using a high-density SNP chip (600 K, Affymetrix®) to estimate genomic heritability of performance traits and to identify genomic regions and their positional candidate genes associated with performance traits in a Brazilian F2 Chicken Resource population. Regions exhibiting selection signatures and a SNP dataset from resequencing were integrated with the genomic regions identified using the chip to refine the list of positional candidate genes and identify potential causative mutations. Results: Feed intake (FI), feed conversion ratio (FC), feed efficiency (FE) and weight gain (WG) exhibited low genomic heritability values (i.e. from 0.0002 to 0.13), while body weight at hatch (BW1), 35 days-of-age (BW35), and 41 days-of-age (BW41) exhibited high genomic heritability values (i.e. from 0.60 to 0.73) in this F2 population. Twenty unique 1-Mb genomic windows were associated with BW1, BW35 or BW41, located on GGA1?4, 6?7, 10, 14, 24, 27 and 28. Thirty-eight positional candidate genes were identified within these windows, and three of them overlapped with selection signature regions. Thirteen predicted deleterious and three high impact sequence SNPs in these QTL regions were annotated in 11 positional candidate genes related to osteogenesis, skeletal muscle development... Mostrar Tudo |
Palavras-Chave: |
Características de desempenho; Genomic heritability; Genotypic data; GWAS; Herdabilidade genômica; Performance traits. |
Thesagro: |
Frango de Corte; Genoma; Seleção Genótipa. |
Categoria do assunto: |
-- |
Marc: |
LEADER 03240naa a2200337 a 4500 001 2115438 005 2019-12-06 008 2019 bl uuuu u00u1 u #d 100 1 $aMOREIRA, G. C. M. 245 $aUnraveling genomic associations with feed efficiency and body weight traits in chickens through an integrative approach.$h[electronic resource] 260 $c2019 520 $aAbstract Background: Feed efficiency and growth rate have been targets for selection to improve chicken production. The incorporation of genomic tools may help to accelerate selection. We genotyped 529 individuals using a high-density SNP chip (600 K, Affymetrix®) to estimate genomic heritability of performance traits and to identify genomic regions and their positional candidate genes associated with performance traits in a Brazilian F2 Chicken Resource population. Regions exhibiting selection signatures and a SNP dataset from resequencing were integrated with the genomic regions identified using the chip to refine the list of positional candidate genes and identify potential causative mutations. Results: Feed intake (FI), feed conversion ratio (FC), feed efficiency (FE) and weight gain (WG) exhibited low genomic heritability values (i.e. from 0.0002 to 0.13), while body weight at hatch (BW1), 35 days-of-age (BW35), and 41 days-of-age (BW41) exhibited high genomic heritability values (i.e. from 0.60 to 0.73) in this F2 population. Twenty unique 1-Mb genomic windows were associated with BW1, BW35 or BW41, located on GGA1?4, 6?7, 10, 14, 24, 27 and 28. Thirty-eight positional candidate genes were identified within these windows, and three of them overlapped with selection signature regions. Thirteen predicted deleterious and three high impact sequence SNPs in these QTL regions were annotated in 11 positional candidate genes related to osteogenesis, skeletal muscle development, growth, energy metabolism and lipid metabolism, which may be associated with body weight in chickens. Conclusions: The use of a high-density SNP array to identify QTL which were integrated with whole genome sequence signatures of selection allowed the identification of candidate genes and candidate causal variants. One novel QTL was detected providing additional information to understand the genetic architecture of body weight traits. We identified QTL for body weight traits, which were also associated with fatness in the same population. Our findings form a basis for further functional studies to elucidate the role of specific genes in regulating body weight and fat deposition in chickens, generating useful information for poultry breeding programs. 650 $aFrango de Corte 650 $aGenoma 650 $aSeleção Genótipa 653 $aCaracterísticas de desempenho 653 $aGenomic heritability 653 $aGenotypic data 653 $aGWAS 653 $aHerdabilidade genômica 653 $aPerformance traits 700 1 $aPOLETI, M. D. 700 1 $aPÉRTILLE, F. 700 1 $aBOSCHIERO, C. 700 1 $aCESAR, A. S. M. 700 1 $aGODOY, T. F. 700 1 $aLEDUR, M. C. 700 1 $aREECY, J. M. 700 1 $aGARRICK, D. J. 700 1 $aCOUTINHO, L. L. 773 $tBMC Genetics$gv. 20, n. 83, 2019.
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Embrapa Suínos e Aves (CNPSA) |
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![](/consulta/web/img/deny.png) | Acesso ao texto completo restrito à biblioteca da Embrapa Recursos Genéticos e Biotecnologia. Para informações adicionais entre em contato com cenargen.biblioteca@embrapa.br. |
Registro Completo
Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
Data corrente: |
26/11/2019 |
Data da última atualização: |
01/04/2020 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Circulação/Nível: |
A - 2 |
Autoria: |
BORGES, R.; BOFF, M. I. C.; MANTOVANI, A.; BISCARO-BORGES, C.; BLASSIOLI-MORAES, M. C. |
Afiliação: |
RAFAEL BORGES, UNIARP; MARI INÊS CARISSIMI BOFF, UDESC; ADELAR MANTOVANI, UDESC; CAMILA BISCARO-BORGES, UDESC; MARIA CAROLINA BLASSIOLI MORAES, Cenargen. |
Título: |
Effect of canopy cover on development of cedar (Cedrela fissilis) and aspects of damage caused by Hypsipyla grandella in agroforestry system. |
Ano de publicação: |
2019 |
Fonte/Imprenta: |
Ciência Florestal, v. 29, n. 3, p. 1324-1332, 2019. |
DOI: |
10.5902/1980509834378 |
Idioma: |
Inglês |
Palavras-Chave: |
Broca-do-cedro; Mahogany shoot borer; Radiação fotossinteticamente ativa; Radiação ultravioleta. |
Thesagro: |
Feromônio. |
Thesaurus NAL: |
Pheromones; Photosynthetically active radiation; Ultraviolet radiation. |
Categoria do assunto: |
-- |
Marc: |
LEADER 00904naa a2200265 a 4500 001 2115154 005 2020-04-01 008 2019 bl uuuu u00u1 u #d 024 7 $a10.5902/1980509834378$2DOI 100 1 $aBORGES, R. 245 $aEffect of canopy cover on development of cedar (Cedrela fissilis) and aspects of damage caused by Hypsipyla grandella in agroforestry system.$h[electronic resource] 260 $c2019 650 $aPheromones 650 $aPhotosynthetically active radiation 650 $aUltraviolet radiation 650 $aFeromônio 653 $aBroca-do-cedro 653 $aMahogany shoot borer 653 $aRadiação fotossinteticamente ativa 653 $aRadiação ultravioleta 700 1 $aBOFF, M. I. C. 700 1 $aMANTOVANI, A. 700 1 $aBISCARO-BORGES, C. 700 1 $aBLASSIOLI-MORAES, M. C. 773 $tCiência Florestal$gv. 29, n. 3, p. 1324-1332, 2019.
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