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Registro Completo |
Biblioteca(s): |
Embrapa Florestas; Embrapa Mandioca e Fruticultura. |
Data corrente: |
28/12/2016 |
Data da última atualização: |
03/01/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
AZEVEDO, C. F.; RESENDE, M. D. V. de; SILVA, F. F.; VIANA, J. M. S.; VALENTE, M. S. F.; RESENDE JUNIOR, M. F. R.; OLIVEIRA, E. J. de. |
Afiliação: |
C. F. Azevedo, Departamento de Estatística, Universidade Federal de Viçosa; MARCOS DEON VILELA DE RESENDE, CNPF; F. F. Silva, Departamento de Zootecnia, Universidade Federal de Viçosa; J. M. S. Viana, Departamento de Biologia Geral, Universidade Federal de Viçosa; M. S. F. Valente, Departamento de Biologia Geral, Universidade Federal de Viçosa; M. F. R. Resende Junior, RAPID Genomics, Florida; EDER JORGE DE OLIVEIRA, CNPMF. |
Título: |
New accuracy estimators for genomic selection with application in a cassava (Manihot esculenta) breeding program. |
Ano de publicação: |
2016 |
Fonte/Imprenta: |
Genetics and Molecular Research, v. 15, n. 4, gmr.15048838, Oct. 2016. |
DOI: |
10.4238/gmr.15048838 |
Idioma: |
Inglês |
Conteúdo: |
ABSTRACT. Genomic selection is the main force driving applied breeding programs and accuracy is the main measure for evaluating its efficiency. The traditional estimator (TE) of experimental accuracy is not fully adequate. This study proposes and evaluates the performance and efficiency of two new accuracy estimators, called regularized estimator (RE) and hybrid estimator (HE), which were applied to a practical cassava breeding program and also to simulated data. The simulation study considered two individual narrow sense heritability levels and two genetic architectures for traits. TE, RE, and HE were compared under four validation procedures: without validation (WV), independent validation, ten-fold validation through jacknife allowing different markers, and with the same markers selected in each cycle. RE presented accuracies closer to the parametric ones and less biased and more precise ones than TE. HE proved to be very effective in the WV procedure. The estimators were applied to five traits evaluated in a cassava experiment, including 358 clones genotyped for 390 SNPs. Accuracies ranged from 0.67 to 1.12 with TE and from 0.22 to 0.51 with RE. These results indicated that TE overestimated the accuracy and led to one accuracy estimate (1.12) higher than one, which is outside of the parameter space. Use of RE turned the accuracy into the parameter space. Cassava breeding programs can be more realistically implemented using the new estimators proposed in this study, providing less risky practical inferences. MenosABSTRACT. Genomic selection is the main force driving applied breeding programs and accuracy is the main measure for evaluating its efficiency. The traditional estimator (TE) of experimental accuracy is not fully adequate. This study proposes and evaluates the performance and efficiency of two new accuracy estimators, called regularized estimator (RE) and hybrid estimator (HE), which were applied to a practical cassava breeding program and also to simulated data. The simulation study considered two individual narrow sense heritability levels and two genetic architectures for traits. TE, RE, and HE were compared under four validation procedures: without validation (WV), independent validation, ten-fold validation through jacknife allowing different markers, and with the same markers selected in each cycle. RE presented accuracies closer to the parametric ones and less biased and more precise ones than TE. HE proved to be very effective in the WV procedure. The estimators were applied to five traits evaluated in a cassava experiment, including 358 clones genotyped for 390 SNPs. Accuracies ranged from 0.67 to 1.12 with TE and from 0.22 to 0.51 with RE. These results indicated that TE overestimated the accuracy and led to one accuracy estimate (1.12) higher than one, which is outside of the parameter space. Use of RE turned the accuracy into the parameter space. Cassava breeding programs can be more realistically implemented using the new estimators proposed in this study, provi... Mostrar Tudo |
Palavras-Chave: |
Accuracy estimator; Cross-validation; Genomic prediction; Mnadioca; Seleção genômica. |
Thesagro: |
Mandioca; Manihot esculenta; Melhoramento vegetal. |
Thesaurus Nal: |
Cassava; Plant breeding. |
Categoria do assunto: |
G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/161813/1/2016-M.Deon-GMR-NewAccuracy.pdf
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Marc: |
LEADER 02532naa a2200325 a 4500 001 2072711 005 2018-01-03 008 2016 bl uuuu u00u1 u #d 024 7 $a10.4238/gmr.15048838$2DOI 100 1 $aAZEVEDO, C. F. 245 $aNew accuracy estimators for genomic selection with application in a cassava (Manihot esculenta) breeding program.$h[electronic resource] 260 $c2016 520 $aABSTRACT. Genomic selection is the main force driving applied breeding programs and accuracy is the main measure for evaluating its efficiency. The traditional estimator (TE) of experimental accuracy is not fully adequate. This study proposes and evaluates the performance and efficiency of two new accuracy estimators, called regularized estimator (RE) and hybrid estimator (HE), which were applied to a practical cassava breeding program and also to simulated data. The simulation study considered two individual narrow sense heritability levels and two genetic architectures for traits. TE, RE, and HE were compared under four validation procedures: without validation (WV), independent validation, ten-fold validation through jacknife allowing different markers, and with the same markers selected in each cycle. RE presented accuracies closer to the parametric ones and less biased and more precise ones than TE. HE proved to be very effective in the WV procedure. The estimators were applied to five traits evaluated in a cassava experiment, including 358 clones genotyped for 390 SNPs. Accuracies ranged from 0.67 to 1.12 with TE and from 0.22 to 0.51 with RE. These results indicated that TE overestimated the accuracy and led to one accuracy estimate (1.12) higher than one, which is outside of the parameter space. Use of RE turned the accuracy into the parameter space. Cassava breeding programs can be more realistically implemented using the new estimators proposed in this study, providing less risky practical inferences. 650 $aCassava 650 $aPlant breeding 650 $aMandioca 650 $aManihot esculenta 650 $aMelhoramento vegetal 653 $aAccuracy estimator 653 $aCross-validation 653 $aGenomic prediction 653 $aMnadioca 653 $aSeleção genômica 700 1 $aRESENDE, M. D. V. de 700 1 $aSILVA, F. F. 700 1 $aVIANA, J. M. S. 700 1 $aVALENTE, M. S. F. 700 1 $aRESENDE JUNIOR, M. F. R. 700 1 $aOLIVEIRA, E. J. de 773 $tGenetics and Molecular Research$gv. 15, n. 4, gmr.15048838, Oct. 2016.
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Registro original: |
Embrapa Florestas (CNPF) |
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Biblioteca(s): |
Embrapa Acre. |
Data corrente: |
24/03/2023 |
Data da última atualização: |
22/09/2023 |
Tipo da produção científica: |
Artigo em Anais de Congresso |
Autoria: |
SILVA, S. S. da; MELO, A. W. F. de; SILVA, J. R. T. da; AMARAL, E. F. do. |
Afiliação: |
SONAIRA SOUZA DA SILVA, UNIVERSIDADE FEDERAL DO ACRE; ANTONIO WILLIAN FLORES DE MELO, UNIVERSIDADE FEDERAL DO ACRE; JOSÉ RIBAMAR TORRES DA SILVA, UNIVERSIDADE FEDERAL DO ACRE; EUFRAN FERREIRA DO AMARAL, CPAF-AC. |
Título: |
Uso de dados SRTM aplicados a levantamentos pedológicos: o caso do Projeto de Assentamento Favo de Mel, Acre/Brasil. |
Ano de publicação: |
2007 |
Fonte/Imprenta: |
In: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 13., 2007, Florianópolis. Anais... São José dos Campos: INPE, 2007. |
Páginas: |
p. 2187-2189. |
Idioma: |
Português |
Conteúdo: |
Considering the potentiality and necessity of the pedology surveys for the environment management, the present work has the objective this work is application of the SRTM data in pedology survey. The use of data SRTM in pedology surveys speeds up the methodological process with one all, increasing the effectiveness of the collections of field data, reducing the work time, diminishing financial costs and increasing the quality and the precision of the final map. |
Palavras-Chave: |
Acre; Amazonia Occidental; Amazônia Ocidental; Imagem de satélite; Mapa de suelos; Mapa pedológico; Projeto de Assentamento Favo de Mel; Reconocimiento de suelos; Sena Madureira (AC); SRTM; Teledetección; Western Amazon. |
Thesagro: |
Cartografia; Reconhecimento do Solo; Sensoriamento Remoto. |
Thesaurus NAL: |
Remote sensing; Soil map; Soil surveys. |
Categoria do assunto: |
P Recursos Naturais, Ciências Ambientais e da Terra |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1152731/1/27432.pdf
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Marc: |
LEADER 01655nam a2200373 a 4500 001 2152731 005 2023-09-22 008 2007 bl uuuu u00u1 u #d 100 1 $aSILVA, S. S. da 245 $aUso de dados SRTM aplicados a levantamentos pedológicos$bo caso do Projeto de Assentamento Favo de Mel, Acre/Brasil.$h[electronic resource] 260 $aIn: SIMPÓSIO BRASILEIRO DE SENSORIAMENTO REMOTO, 13., 2007, Florianópolis. Anais... São José dos Campos: INPE$c2007 300 $ap. 2187-2189. 520 $aConsidering the potentiality and necessity of the pedology surveys for the environment management, the present work has the objective this work is application of the SRTM data in pedology survey. The use of data SRTM in pedology surveys speeds up the methodological process with one all, increasing the effectiveness of the collections of field data, reducing the work time, diminishing financial costs and increasing the quality and the precision of the final map. 650 $aRemote sensing 650 $aSoil map 650 $aSoil surveys 650 $aCartografia 650 $aReconhecimento do Solo 650 $aSensoriamento Remoto 653 $aAcre 653 $aAmazonia Occidental 653 $aAmazônia Ocidental 653 $aImagem de satélite 653 $aMapa de suelos 653 $aMapa pedológico 653 $aProjeto de Assentamento Favo de Mel 653 $aReconocimiento de suelos 653 $aSena Madureira (AC) 653 $aSRTM 653 $aTeledetección 653 $aWestern Amazon 700 1 $aMELO, A. W. F. de 700 1 $aSILVA, J. R. T. da 700 1 $aAMARAL, E. F. do
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