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Registro Completo |
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Biblioteca(s): |
Embrapa Gado de Leite. |
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Data corrente: |
19/11/2013 |
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Data da última atualização: |
05/02/2024 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
UTSUNOMIYA, Y. T.; CARMO, A. S. do; CARVALHEIRO, R.; NEVES, H. H. R.; MATOS, M. C.; ZAVAREZ, L. B.; O'BRIEN, A. M. P.; SÖLKNER, J.; McEWAN, J. C.; COLE, J. B.; TASSEL, C. P. V.; SCHENKEL, F. S.; SILVA, M. V. G. B.; PORTO NETO, L. R.; SONSTEGARD, T. S.; GARCIA, J. F. |
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Afiliação: |
YURI T. UTSUNOMIYA, UNESP; ADRIANA S. DO CARMO, UNESP; ROBERTO CARVALHEIRO, GenSys Consultores Associados; HAROLDO H. R. NEVES, UNESP; MÁRCIA C. MATOS, UNESP; LUDMILLA B. ZAVAREZ, UNESP; ANA M. PÉREZ O'BRIEN, University of Natural Resources and Life Sciences, Vienna; JOHANN SÖLKNER, University of Natural Resources and Life Sciences, Vienna; JOHN C. McEWAN, Centre for Reproduction and Genomics, AgResearch, Mosgiel, New Zealand; JOHN B. COLE, ARS-USDA, USA; CURTIS P. VAN TASSEL, ARS-USDA, USA; FLÁVIO S. SCHENKEL, University of Guelph, Canada; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; LAERCIO R. PORTO NETO, University of Queensland, Australia; University of New England, Australia; TAD S. SONSTEGARD, ARS-USDA, USA; JOSÉ F. GARCIA, UNESP. |
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Título: |
Genome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
BMC Genetics, London, v. 14, article 52, 2013. |
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DOI: |
https://doi.org/10.1186/1471-2156-14-52 |
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Idioma: |
Inglês |
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Conteúdo: |
Background - Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs). Results - The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length. Conclusions- This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus). MenosBackground - Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs). Results - The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length. Conclusions- This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with ... Mostrar Tudo |
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Palavras-Chave: |
Bos primigenius indicus; GWAS; Nellore cattle; Stature. |
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Thesaurus Nal: |
birth weight. |
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Categoria do assunto: |
G Melhoramento Genético |
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Marc: |
LEADER 02754naa a2200373 a 4500
001 1971572
005 2024-02-05
008 2013 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1186/1471-2156-14-52$2DOI
100 1 $aUTSUNOMIYA, Y. T.
245 $aGenome-wide association study for birth weight in Nellore cattle points to previously described orthologous genes affecting human and bovine height.$h[electronic resource]
260 $c2013
520 $aBackground - Birth weight (BW) is an economically important trait in beef cattle, and is associated with growth- and stature-related traits and calving difficulty. One region of the cattle genome, located on Bos primigenius taurus chromosome 14 (BTA14), has been previously shown to be associated with stature by multiple independent studies, and contains orthologous genes affecting human height. A genome-wide association study (GWAS) for BW in Brazilian Nellore cattle (Bos primigenius indicus) was performed using estimated breeding values (EBVs) of 654 progeny-tested bulls genotyped for over 777,000 single nucleotide polymorphisms (SNPs). Results - The most significant SNP (rs133012258, PGC = 1.34 × 10-9), located at BTA14:25376827, explained 4.62% of the variance in BW EBVs. The surrounding 1 Mb region presented high identity with human, pig and mouse autosomes 8, 4 and 4, respectively, and contains the orthologous height genes PLAG1, CHCHD7, MOS, RPS20, LYN, RDHE2 (SDR16C5) and PENK. The region also overlapped 28 quantitative trait loci (QTLs) previously reported in literature by linkage mapping studies in cattle, including QTLs for birth weight, mature height, carcass weight, stature, pre-weaning average daily gain, calving ease, and gestation length. Conclusions- This study presents the first GWAS applying a high-density SNP panel to identify putative chromosome regions affecting birth weight in Nellore cattle. These results suggest that the QTLs on BTA14 associated with body size in taurine cattle (Bos primigenius taurus) also affect birth weight and size in zebu cattle (Bos primigenius indicus).
650 $abirth weight
653 $aBos primigenius indicus
653 $aGWAS
653 $aNellore cattle
653 $aStature
700 1 $aCARMO, A. S. do
700 1 $aCARVALHEIRO, R.
700 1 $aNEVES, H. H. R.
700 1 $aMATOS, M. C.
700 1 $aZAVAREZ, L. B.
700 1 $aO'BRIEN, A. M. P.
700 1 $aSÖLKNER, J.
700 1 $aMcEWAN, J. C.
700 1 $aCOLE, J. B.
700 1 $aTASSEL, C. P. V.
700 1 $aSCHENKEL, F. S.
700 1 $aSILVA, M. V. G. B.
700 1 $aPORTO NETO, L. R.
700 1 $aSONSTEGARD, T. S.
700 1 $aGARCIA, J. F.
773 $tBMC Genetics, London$gv. 14, article 52, 2013.
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Embrapa Gado de Leite (CNPGL) |
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Registro Completo
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Biblioteca(s): |
Embrapa Agrobiologia. |
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Data corrente: |
07/11/2016 |
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Data da última atualização: |
08/11/2016 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
A - 2 |
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Autoria: |
BARAÚNA, A. C.; ROUWS, L. F. M.; ARAUJO, J. L. S. de; REIS JUNIOR, F. B. dos; IANNETTA, P. P. M.; MALUK, M.; GOI, S. R.; REIS, V. M.; JAMES, E. K.; ZILLI, J. E. |
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Afiliação: |
ALEXANDRE C. BARAÚNA, UFRRJ; LUC FELICIANUS MARIE ROUWS, CNPAB; JEAN LUIZ SIMOES DE ARAUJO, CNPAB; FABIO BUENO DOS REIS JUNIOR, CPAC; PIETRO P. M. IANNETA, THE JAMES HUTTON INSITTITUE, INVERGOWRIE, DUNDEE, UK; MARTA MALUC, THE JAMES HUTTON INSTITUTE, INVERGOWRIE, DUNDEE, UK; SILVIA R. GOI, UFRRJ; VERONICA MASSENA REIS, CNPAB; EUAN K. JAMES, THE JAMES HUTTON INSTITUTE, INVERGOWRIE, DUNDEE, UK; JERRI EDSON ZILLI, CNPAB. |
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Título: |
Rhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
International Journal of Systematic and Evolutionary Microbiology, v. 66, p. 1-7, 2016. |
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DOI: |
10.1099/ijsem.0.001322 |
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Idioma: |
Inglês |
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Conteúdo: |
Root nodule bacteria were isolated from nodules on Mimosa pudica L. growing in neutral?alkaline soils from the Distrito Federal in central Brazil. The 16S rRNA gene sequence analysis of 10 strains placed them into the genus Rhizobium with the closest neighbouring species (each with 99% similarity) being Rhizobium grahamii, Rhizobium cauense, Rhizobium mesoamericanum and Rhizobium tibeticum. This high similarity, however, was not confirmed by multi-locus sequence analysis (MLSA) using three housekeeping genes (recA, glnII and rpoB), which revealed R. mesoamericanum CCGE 501T to be the closest type strain (92% sequence similarity or less). Chemotaxonomic data, including fatty acid profiles [with majority being C19 : 0cyclo !8c and ummed feature 8 (C18 : 1!7c/C18 : 1!6c)], DNA G+C content (57.6 mol%), and carbon compound utilization patterns supported the placement of the novel strains in the genus Rhizobium. Results of average nucleotide identity (ANI) differentiated the novel strains from the closest species of the genus Rhizobium, R. mesoamericanum, R. grahamii and R. tibeticum with 89.0, 88.1 and 87.8% similarity, respectively. The symbiotic genes essential for nodulation (nodC) and nitrogen fixation (nifH) were most similar (99?100 %) to those of R. mesoamericanum, another Mimosa-nodulating species. Based on the current data, these 10 strains represent a novel species of the genus Rhizobium for which the name Rhizobium altiplanisp. nov. is proposed. The type strain is BR 10423T (=HAMBI 3664T). MenosRoot nodule bacteria were isolated from nodules on Mimosa pudica L. growing in neutral?alkaline soils from the Distrito Federal in central Brazil. The 16S rRNA gene sequence analysis of 10 strains placed them into the genus Rhizobium with the closest neighbouring species (each with 99% similarity) being Rhizobium grahamii, Rhizobium cauense, Rhizobium mesoamericanum and Rhizobium tibeticum. This high similarity, however, was not confirmed by multi-locus sequence analysis (MLSA) using three housekeeping genes (recA, glnII and rpoB), which revealed R. mesoamericanum CCGE 501T to be the closest type strain (92% sequence similarity or less). Chemotaxonomic data, including fatty acid profiles [with majority being C19 : 0cyclo !8c and ummed feature 8 (C18 : 1!7c/C18 : 1!6c)], DNA G+C content (57.6 mol%), and carbon compound utilization patterns supported the placement of the novel strains in the genus Rhizobium. Results of average nucleotide identity (ANI) differentiated the novel strains from the closest species of the genus Rhizobium, R. mesoamericanum, R. grahamii and R. tibeticum with 89.0, 88.1 and 87.8% similarity, respectively. The symbiotic genes essential for nodulation (nodC) and nitrogen fixation (nifH) were most similar (99?100 %) to those of R. mesoamericanum, another Mimosa-nodulating species. Based on the current data, these 10 strains represent a novel species of the genus Rhizobium for which the name Rhizobium altiplanisp. nov. is proposed. The type strain is BR 1... Mostrar Tudo |
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Palavras-Chave: |
Average nucleotide identity; Bacterial species; BR 10423; Multi locus sequence analysis; Rizóbio. |
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Thesagro: |
Taxonomia. |
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Thesaurus NAL: |
Taxonomy. |
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Categoria do assunto: |
V Taxonomia de Organismos |
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Marc: |
LEADER 02517naa a2200325 a 4500
001 2055950
005 2016-11-08
008 2016 bl --- 0-- u #d
024 7 $a10.1099/ijsem.0.001322$2DOI
100 1 $aBARAÚNA, A. C.
245 $aRhizobium altiplani sp. nov., isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in central Brazil.
260 $c2016
520 $aRoot nodule bacteria were isolated from nodules on Mimosa pudica L. growing in neutral?alkaline soils from the Distrito Federal in central Brazil. The 16S rRNA gene sequence analysis of 10 strains placed them into the genus Rhizobium with the closest neighbouring species (each with 99% similarity) being Rhizobium grahamii, Rhizobium cauense, Rhizobium mesoamericanum and Rhizobium tibeticum. This high similarity, however, was not confirmed by multi-locus sequence analysis (MLSA) using three housekeeping genes (recA, glnII and rpoB), which revealed R. mesoamericanum CCGE 501T to be the closest type strain (92% sequence similarity or less). Chemotaxonomic data, including fatty acid profiles [with majority being C19 : 0cyclo !8c and ummed feature 8 (C18 : 1!7c/C18 : 1!6c)], DNA G+C content (57.6 mol%), and carbon compound utilization patterns supported the placement of the novel strains in the genus Rhizobium. Results of average nucleotide identity (ANI) differentiated the novel strains from the closest species of the genus Rhizobium, R. mesoamericanum, R. grahamii and R. tibeticum with 89.0, 88.1 and 87.8% similarity, respectively. The symbiotic genes essential for nodulation (nodC) and nitrogen fixation (nifH) were most similar (99?100 %) to those of R. mesoamericanum, another Mimosa-nodulating species. Based on the current data, these 10 strains represent a novel species of the genus Rhizobium for which the name Rhizobium altiplanisp. nov. is proposed. The type strain is BR 10423T (=HAMBI 3664T).
650 $aTaxonomy
650 $aTaxonomia
653 $aAverage nucleotide identity
653 $aBacterial species
653 $aBR 10423
653 $aMulti locus sequence analysis
653 $aRizóbio
700 1 $aROUWS, L. F. M.
700 1 $aARAUJO, J. L. S. de
700 1 $aREIS JUNIOR, F. B. dos
700 1 $aIANNETTA, P. P. M.
700 1 $aMALUK, M.
700 1 $aGOI, S. R.
700 1 $aREIS, V. M.
700 1 $aJAMES, E. K.
700 1 $aZILLI, J. E.
773 $tInternational Journal of Systematic and Evolutionary Microbiology$gv. 66, p. 1-7, 2016.
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