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Registro Completo |
Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
Data corrente: |
07/07/2014 |
Data da última atualização: |
25/05/2023 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
OLIVEIRA, E. J. de; FERREIRA, C. F.; SANTOS, V. da S.; JESUS, O. N. de; OLIVEIRA, G. A. F. |
Afiliação: |
EDER JORGE DE OLIVEIRA, CNPMF; CLAUDIA FORTES FERREIRA, CNPMF; VANDERLEI DA SILVA SANTOS, CNPMF; ONILDO NUNES DE JESUS, CNPMF; GILMARA ALVARENGA FACHARDO OLIVEIRA, UFRB. |
Título: |
Potential of SNP markers for the characterization of Brazilian cassava germplasm. |
Ano de publicação: |
2014 |
Fonte/Imprenta: |
Theoretical and Applied Geneticst, 2014 |
ISSN: |
0040-5752 |
DOI: |
10.1007/s00122-014-2309-8 |
Idioma: |
Inglês |
Conteúdo: |
The objective of the present work was to evaluate the diversity and genetic structure of the largest cassava germplasm bank in Brazil. Complementary methodological approaches such as discriminant analysis of principal components (DAPC), Bayesian analysis and molecular analysis of variance (AMOVA) were used to understand the structure and diversity of 1,280 accessions genotyped using 402 single nucleotide polymorphism markers. The genetic diversity (0.327) and the average observed heterozygosity (0.322) were high considering the bi-allelic markers. In terms of population, the presence of a complex genetic structure was observed indicating the formation of 30 clusters by DAPC and 34 clusters by Bayesian analysis. Both methodologies presented difficulties and controversies in terms of the allocation of some accessions to specific clusters. However, the clusters suggested by the DAPC analysis seemed to be more consistent for presenting higher probability of allocation of the accessions within the clusters. Prior information related to breeding patterns and geographic origins of the accessions were not sufficient for providing clear differentiation between the clusters according to the AMOVA analysis. In contrast, the FST was maximized when considering the clusters suggested by the Bayesian and DAPC analyses. The high frequency of germplasm exchange between producers and the subsequent alteration of the name of the same material may be one of the causes of the low association between genetic diversity and geographic origin. The results of this study may benefit cassava germplasm conservation programs, and contribute to the maximization of genetic gains in breeding programs. MenosThe objective of the present work was to evaluate the diversity and genetic structure of the largest cassava germplasm bank in Brazil. Complementary methodological approaches such as discriminant analysis of principal components (DAPC), Bayesian analysis and molecular analysis of variance (AMOVA) were used to understand the structure and diversity of 1,280 accessions genotyped using 402 single nucleotide polymorphism markers. The genetic diversity (0.327) and the average observed heterozygosity (0.322) were high considering the bi-allelic markers. In terms of population, the presence of a complex genetic structure was observed indicating the formation of 30 clusters by DAPC and 34 clusters by Bayesian analysis. Both methodologies presented difficulties and controversies in terms of the allocation of some accessions to specific clusters. However, the clusters suggested by the DAPC analysis seemed to be more consistent for presenting higher probability of allocation of the accessions within the clusters. Prior information related to breeding patterns and geographic origins of the accessions were not sufficient for providing clear differentiation between the clusters according to the AMOVA analysis. In contrast, the FST was maximized when considering the clusters suggested by the Bayesian and DAPC analyses. The high frequency of germplasm exchange between producers and the subsequent alteration of the name of the same material may be one of the causes of the low association bet... Mostrar Tudo |
Thesagro: |
Banco de germoplasma; Mandioca. |
Thesaurus Nal: |
Bayesian theory; Cassava. |
Categoria do assunto: |
-- |
Marc: |
LEADER 02392naa a2200241 a 4500 001 1989884 005 2023-05-25 008 2014 bl uuuu u00u1 u #d 022 $a0040-5752 024 7 $a10.1007/s00122-014-2309-8$2DOI 100 1 $aOLIVEIRA, E. J. de 245 $aPotential of SNP markers for the characterization of Brazilian cassava germplasm.$h[electronic resource] 260 $c2014 520 $aThe objective of the present work was to evaluate the diversity and genetic structure of the largest cassava germplasm bank in Brazil. Complementary methodological approaches such as discriminant analysis of principal components (DAPC), Bayesian analysis and molecular analysis of variance (AMOVA) were used to understand the structure and diversity of 1,280 accessions genotyped using 402 single nucleotide polymorphism markers. The genetic diversity (0.327) and the average observed heterozygosity (0.322) were high considering the bi-allelic markers. In terms of population, the presence of a complex genetic structure was observed indicating the formation of 30 clusters by DAPC and 34 clusters by Bayesian analysis. Both methodologies presented difficulties and controversies in terms of the allocation of some accessions to specific clusters. However, the clusters suggested by the DAPC analysis seemed to be more consistent for presenting higher probability of allocation of the accessions within the clusters. Prior information related to breeding patterns and geographic origins of the accessions were not sufficient for providing clear differentiation between the clusters according to the AMOVA analysis. In contrast, the FST was maximized when considering the clusters suggested by the Bayesian and DAPC analyses. The high frequency of germplasm exchange between producers and the subsequent alteration of the name of the same material may be one of the causes of the low association between genetic diversity and geographic origin. The results of this study may benefit cassava germplasm conservation programs, and contribute to the maximization of genetic gains in breeding programs. 650 $aBayesian theory 650 $aCassava 650 $aBanco de germoplasma 650 $aMandioca 700 1 $aFERREIRA, C. F. 700 1 $aSANTOS, V. da S. 700 1 $aJESUS, O. N. de 700 1 $aOLIVEIRA, G. A. F. 773 $tTheoretical and Applied Geneticst, 2014
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1. | | HYEDA, D.; SILVA, K. da; ETTO, R. M.; ORTIZ, R. S.; ARAGÃO, L. K.; ALTHAUS, H. V.; MAIA, C. M. B. de F.; GALVÃO, C. W. Effect of biochar on the mirobial enzymes activity of soil with Eucalyptus. In: SYMPOSIUM ON BIOLOGICAL NITROGEN FIXATION WITH NON-LEGUMES, 16.; LATINAMERICAN WORKSHOP OF PGPR, 4., 2018, Foz do Iguaçu8. Abastract book. [Brasília, DF]: Embrapa, 2018. p. 58. Session 5- Bacterial and Plant Physiology - Poster V.5.Tipo: Resumo em Anais de Congresso |
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