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Registro Completo |
Biblioteca(s): |
Embrapa Soja. |
Data corrente: |
30/06/2014 |
Data da última atualização: |
07/04/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
SIQUEIRA, A. F.; ORMEÑO-ORRILLO, E.; SOUZA, R. C.; RODRIGUES, E. P.; ALMEIDA, L. G. P.; BARCELLOS, F. G.; BATISTA, J. S. S.; NAKATANI, A. S.; MARTÍNEZ-ROMERO, E.; VASCONCELOS, A. T. R.; HUNGRIA, M. |
Afiliação: |
ARTHUR FERNANDES SIQUEIRA, UEL; ERNESTO ORMEÑO-ORRILLO, Universidad Nacional Autónoma de México; RANGEL CELSO SOUZA, Laboratório Nacional de Computação Científica; ELISETE PAINS RODRIGUES, UEL; LUIZ GONZAGA PAULA ALMEIDA, Laboratório Nacional de Computação Científica; FERNANDO GOMES BARCELLOS, UEL; JESIANE STEFÂNIA SILVA BATISTA, UEPG; ANDRE SHIGUEYOSHI NAKATANI; ESPERANZA MARTÍNEZ-ROMERO, Universidad Nacional Autónoma de México; ANA TEREZA RIBEIRO VASCONCELOS, Laboratório Nacional de Computação Científica; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
Título: |
Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. |
Ano de publicação: |
2014 |
Fonte/Imprenta: |
BMC Genomics, v. 15, n. 420, June 2014. |
Páginas: |
20 p. |
ISSN: |
1471-2164 |
DOI: |
10.1186/1471-2164-15-420 |
Idioma: |
Inglês |
Conteúdo: |
The soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA metabolism, potentially correlated with higher saprophytic capacity and competitiveness than seen with CPAC 7. In CPAC 7, more genes were related to the metabolism of amino acids and hydrogen uptake, potentially correlated with higher efficiency of nitrogen fixation than seen with CPAC 15. Several differences and similarities detected between the two elite soybean-inoculant strains and between the two species of Bradyrhizobium provide new insights into adaptation to tropical soils, efficiency of N2 fixation, nodulation and competitiveness. MenosThe soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA ... Mostrar Tudo |
Thesagro: |
Soja. |
Thesaurus Nal: |
Soybeans. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/104186/1/Comparative-genomics-of-Bradyrhizobium-japonicum-CPAC-15-and-Bradyrhizobium-diazoefficiens-CPAC-7-elite-model-strains-for-understanding-symbiotic-performance-with-soybean.pdf
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Marc: |
LEADER 02978naa a2200301 a 4500 001 1989259 005 2022-04-07 008 2014 bl uuuu u00u1 u #d 022 $a1471-2164 024 7 $a10.1186/1471-2164-15-420$2DOI 100 1 $aSIQUEIRA, A. F. 245 $aComparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7$belite model strains for understanding symbiotic performance with soybean.$h[electronic resource] 260 $c2014 300 $a20 p. 520 $aThe soybean-Bradyrhizobium symbiosis can be highly efficient in fixing nitrogen, but few genomic sequences of elite inoculant strains are available. Here we contribute with information on the genomes of two commercial strains that are broadly applied to soybean crops in the tropics. B. japonicum CPAC 15 (=SEMIA 5079) is outstanding in its saprophytic capacity and competitiveness, whereas B. diazoefficiens CPAC 7 (=SEMIA 5080) is known for its high efficiency in fixing nitrogen. Both are well adapted to tropical soils. The genomes of CPAC 15 and CPAC 7 were compared to each other and also to those of B. japonicum USDA 6T and B. diazoefficiens USDA 110T. Differences in genome size were found between species, with B. japonicum having larger genomes than B. diazoefficiens. Although most of the four genomes were syntenic, genome rearrangements within and between species were observed, including events in the symbiosis island. In addition to the symbiotic region, several genomic islands were identified. Altogether, these features must confer high genomic plasticity that might explain adaptation and differences in symbiotic performance. It was not possible to attribute known functions to half of the predicted genes. About 10% of the genomes was composed of exclusive genes of each strain, but up to 98% of them were of unknown function or coded for mobile genetic elements. In CPAC 15, more genes were associated with secondary metabolites, nutrient transport, iron-acquisition and IAA metabolism, potentially correlated with higher saprophytic capacity and competitiveness than seen with CPAC 7. In CPAC 7, more genes were related to the metabolism of amino acids and hydrogen uptake, potentially correlated with higher efficiency of nitrogen fixation than seen with CPAC 15. Several differences and similarities detected between the two elite soybean-inoculant strains and between the two species of Bradyrhizobium provide new insights into adaptation to tropical soils, efficiency of N2 fixation, nodulation and competitiveness. 650 $aSoybeans 650 $aSoja 700 1 $aORMEÑO-ORRILLO, E. 700 1 $aSOUZA, R. C. 700 1 $aRODRIGUES, E. P. 700 1 $aALMEIDA, L. G. P. 700 1 $aBARCELLOS, F. G. 700 1 $aBATISTA, J. S. S. 700 1 $aNAKATANI, A. S. 700 1 $aMARTÍNEZ-ROMERO, E. 700 1 $aVASCONCELOS, A. T. R. 700 1 $aHUNGRIA, M. 773 $tBMC Genomics$gv. 15, n. 420, June 2014.
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Embrapa Soja (CNPSO) |
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121. | | COSTAMILAN, L. M.; YORINORI, J. T.; ALMEIDA, A. M. R.; SEIXAS, C. D. S.; BINNECK, E.; ARAÚJO, M. R.; CARBONARI, J. A. First report of Diaporthe phaseolorum var. caulivora infecting soybean plants in Brazil. Tropical Plant Pathology, Brasília, DF, v. 33, n. 5, p. 381-385, Sep./Oct. 2008.Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
Biblioteca(s): Embrapa Soja. |
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124. | | BARBOSA, R. L.; HELENE, L. C. F.; RONDINA, A. B. L.; GUIMARÃES, G. S.; HUNGRIA, M.; NOGUEIRA, M. A. Exopolímeros bacterianos como protetores celulares em inoculantes para soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 18., 2023, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2023. (Embrapa Soja. Documentos, 453). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 106-112.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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125. | | KATO, M.; YORINORI, J. T.; PAIVA, W. M.; YAMAOKA, Y.; ALMEIDA, A. M. R. Epidemiological studies of soybean rust in South America: host susceptibility and pathogenic races. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 35-46. (JIRCAS Working Report, 51).Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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127. | | CONTE, O.; PRANDO, A. M.; CASTRO, C. de; BALBINOT JUNIOR, A. A.; CAMPOS, L. J. M.; RAMOS JUNIOR, E. U.; HIRAKURI, M. H.; ZITO, R. K.; GODINHO, V. de P. C.; BROGIN, R. L.; ARAUJO, L. V. de. A evolução da produção de Soja na macrorregião sojícola 4. In: HIRAKURI, M. H.; CONTE, O.; PRANDO, A. M.; CASTRO, C. de; BALBINOT JUNIOR, A. A. (Ed.). Diagnóstico da produção de soja na macrorregião sojícola 4. Londrina: Embrapa Soja, 2019. (Embrapa Soja. Documentos, 412). p. 25-62.Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Rondônia; Embrapa Soja. |
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128. | | POLIZELI, S. R. A.; FIGLIANO, G. C.; HOSHINO, R. T.; MARIN, S. R. R.; NEPOMUCENO, A. L.; MERTZ-HENNING, L. M. Expressão transiente em embriões de soja para validação in vivo de gRNAs visando a edição genica via CRISPR/Cas. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 18., 2023, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2023. (Embrapa Soja. Documentos, 453). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 52-58.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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129. | | OLIVEIRA, A. B. de; MERTZ-HENNING, L. M.; NEUMAIER, N.; FARIAS, J. R. B.; NEPOMUCENO, A. L. Estruturas da planta e fases de desenvolvimento. In: OLIVEIRA, A. B. de; LEITE, R. M. V. B. de C.; SEIXAS, C. D. S.; KERN, H. S. Soja: o produtor pergunta, a Embrapa responde. Brasília, DF: Embrapa, 2019. (Coleção 500 perguntas, 500 respostas). p. 25-38.Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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130. | | LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. BMC Genomics, v. 14, article 577, 2013. 17 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Soja. |
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131. | | BENCKE-MALATO, M.; CABREIRA, C.; WIEBKE-STROHM, B.; BÜCKER-NETO, L.; MANCINI, E.; OSORIO, M. B.; HOMRICH, M. S.; TURCHETTO-ZOLET, A. C.; CARVALHO, M. C. C. G. de; STOLF, R.; WEBER, R. L. M.; WESTERGAARD, G.; CASTAGNARO, A. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C.; MARGIS-PINHEIRO, M.; BODANESE-ZANETTINI, M. H. Genome-wide annotation of the soybean WRKY family and functional characterization of genes involved in response to Phakopsora pachyrhizi infection. BMC Plant Biology, v. 14, n. 1, article 236, Sept. 2014. 18 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Soja. |
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132. | | OLIVEIRA, M. F. de; DALL'AGNOL, A.; MOREIRA, J. U. V.; PIPOLO, A. E.; MELO, C. L. P. de; ARIAS, C. A. A. Genética e melhoramento. In: OLIVEIRA, A. B. de; LEITE, R. M. V. B. de C.; SEIXAS, C. D. S.; KERN, H. S. Soja: o produtor pergunta, a Embrapa responde. Brasília, DF: Embrapa, 2019. (Coleção 500 perguntas, 500 respostas). p. 49-57.Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
| |
133. | | CARRÃO-PANIZZI, M. C.; SILVA, J. B. Genótipos de soja para utilização como soja verde ou hortaliça. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 3., 2005, Gramado. Anais... Passo Fundo: Embrapa Trigo; Sociedade Brasileira de Melhoramento de Plantas, 2005. Seção: Área 1 - Espécies Anuais - Resumos: Pdf.1524b. Editado por Ana Christina Sagebin Albuquerque, Cláudia de Mori, Edson Iorczeski, João Carlos Haas, Paulo Fernando Bertagnolli.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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134. | | FRANÇA-NETO, J. de B.; PÁDUA, G. P. de; KRZYZANOWSKI, F. C.; CARVALHO, M. L. M. de; HENNING, A. A.; LORINI, I. Ocorrência de semente esverdeada em soja e seus efeitos sobre a sua qualidade. GALHARDI JUNIOR, A.; SIQUERI, F.; CAJU, J.; CAMACHO, S. (ed.). Boletim de pesquisa de soja 2013/2014. Rondonópolis: Fundação MT, 2014. p. 252-261. (Fundação MT. Boletim de pesquisa de soja, 16).Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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136. | | ROGGIA, S.; CORREA-FERREIRA, B. S.; SÓSA-GOMEZ, D. R.; BUENO, A. de F.; HIROSE, E.; HOFFMANN-CAMPO, C. B.; GAZZONI, D. L.; OLIVEIRA, A. B. de. Manejo de pragas. In: OLIVEIRA, A. B. de; LEITE, R. M. V. B. de C.; SEIXAS, C. D. S.; KERN, H. S. Soja: o produtor pergunta, a Embrapa responde. Brasília, DF: Embrapa, 2019. (Coleção 500 perguntas, 500 respostas). p. 157-183.Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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137. | | NEUMAIER, N. The partnership: JIRCAS /Embrapa Soybean. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 1-5. (JIRCAS Working Report, 51).Tipo: Capítulo em Livro Técnico-Científico |
Biblioteca(s): Embrapa Soja. |
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140. | | SANTANA, F. A.; SILVA, M. F. da; GUIMARÃES, J. K. F.; FERREIRA, M. F. da S.; PEREIRA, W. D.; PIOVESAN, N. D.; BARROS, E. G. de. Marker-assisted selection strategies for developing resistant soybean plants to cyst nematode. Crop Breeding and Applied Biotechnology, Londrina, v. 14, n. 3, p. 180-186, 2014.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
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