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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
02/09/2013 |
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Data da última atualização: |
04/04/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
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Afiliação: |
VALÉRIA S. LOPES-CAITAR; MAYRA C. C. G. DE CARVALHO, UENP; MARCIA KAMOGAE KUWAHARA, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI; WALDIR PEREIRA DIAS, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
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Título: |
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
BMC Genomics, v. 14, article 577, 2013. |
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Páginas: |
17 p. |
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ISSN: |
1471-2164 |
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DOI: |
10.1186/1471-2164-14-577 |
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Idioma: |
Inglês |
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Conteúdo: |
The Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. MenosThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. ... Mostrar Tudo |
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Thesagro: |
Soja. |
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Thesaurus Nal: |
Soybeans. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/102608/1/genome-wide.pdf
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Marc: |
LEADER 03155naa a2200265 a 4500
001 1965345
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008 2013 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/1471-2164-14-577$2DOI
100 1 $aLOPES-CAITAR, V. S.
245 $aGenome-wide analysis of the Hsp20 gene family in soybean$bcomprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses.$h[electronic resource]
260 $c2013
300 $a17 p.
520 $aThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function.
650 $aSoybeans
650 $aSoja
700 1 $aCARVALHO, M. C. C. G. de
700 1 $aLUANA M. DARBEN
700 1 $aKUWAHARA, M. K.
700 1 $aNEPOMUCENO, A. L.
700 1 $aDIAS, W. P.
700 1 $aABDELNOOR, R. V.
700 1 $aMARCELINO-GUIMARÃES, F. C.
773 $tBMC Genomics$gv. 14, article 577, 2013.
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Embrapa Soja (CNPSO) |
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| 101. |  | MOLINARI, M. D. C.; FUGANTI-PAGLIARINI, R.; BARBOSA, D. de A.; KAFER, J. M.; MARIN, D. C.; MARIN, S. R. R.; MERTZ-HENNING, L. M.; NEPOMUCENO, A. L.; RECH FILHO, E. L. Screening de proteínas bioativas com potencial antioxidante em proteoma de soja cv. BRS 537. In: CONGRESSO BRASILEIRO DE SOJA, 9., 2022, Foz do iguaçu, PR. Desafios para a produtividade sustentável no Mercosul: resumos. Brasília, DF: Embrapa, 2022. Regina Maria Villas Bôas de Campos Leite, Adeney de Freitas Bueno, editores técnicos. resumo 154. p. 174.| Tipo: Resumo em Anais de Congresso |
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| 103. | | FRANÇA-NETO, J. B.; KRZYZANOWSKI, F. C.; PÁDUA, G. P.; HENNING, A. A.; COSTA, N. P. da; ARANTES, N. E. Tolerância ao enrugamento de grãos causado por estresses térmico e hídrico: seleção de genótipos de soja. Informativo ABRATES, Londrina, v. 13, n. 3, p. 81, set. 2003. Número especial, ref. 040. Edição dos Resumos do XIII Congresso Brasileiro de Sementes, Gramado, RS, set. 2003.| Tipo: Resumo em Anais de Congresso |
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| 104. | | TOLEDO, J. F. F. de; OLIVEIRA, M. F. de; ARIAS, C. A. A.; TRILLER, C.; MIRANDA, Z. F. S.; SOUZA, R. F. de. Variabilidade no florescimento em linhas avançadas de soja sob diversos fotoperíodos. In: CONGRESSO NACIONAL DE GENÉTICA, 41., 1995, Caxambu. Programa e resumos... Revista Brasileira de Genética, v. 18, n. 3, p. 100, set. 1995. Suplemento. A.31; A.32.| Tipo: Resumo em Anais de Congresso |
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| 106. | | CAMARGO, J. F. M.; LORETO, R. B.; MEYER, M. C. Uso de agentes antagonistas no controle biológico de Aphelenchoides besseyi em soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 18., 2023, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2023. (Embrapa Soja. Documentos, 453). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 65-73.| Tipo: Artigo em Anais de Congresso |
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| 107. | | ZUCCHI, M. I.; PINHEIRO, J. B.; VELLO, N. A.; OLIVEIRA, E. J. de; ARIAS, C. A. A.; PRIOLLI, R. H. G.; MOLLER, M.; COLOMBO, C. A. Uso de marcadores microssatélites na caracterização de cultivares brasileiras de soja. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 3., 2005, Gramado. Anais... Passo Fundo: Embrapa Trigo; Sociedade Brasileira de Melhoramento de Plantas, 2005. 1 CD-ROM. Seção: Área 1 - Espécies Anuais - Resumos: Pdf.1645. Editado por Ana Christina Sagebin Albuquerque, Cláudia de Mori, Edson Iorczeski, João Carlos Haas, Paulo Fernando Bertagnolli.| Tipo: Resumo em Anais de Congresso |
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| 112. | | ARIAS, C. A. A.; TOLEDO, J. F. F. de; PÍPOLO, A. E.; RIBEIRO, A. S. Potencial produtivo de linhagens de soja desenvolvidas pelo programa de melhoramento para resistência a insetos. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 3., 2005, Gramado. Anais... Passo Fundo: Embrapa Trigo; Sociedade Brasileira de Melhoramento de Plantas, 2005. 1 CD-ROM. Seção: Área 1 - Espécies Anuais - Resumos: Pdf.1628. Editado por Ana Christina Sagebin Albuquerque, Cláudia de Mori, Edson Iorczeski, João Carlos Haas, Paulo Fernando Bertagnolli.| Tipo: Resumo em Anais de Congresso |
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| 114. | | TOBITA, S.; YAMANAKA, N.; NEPOMUCENO, A. L.; FARIAS, J. R. B.; NEUMAIER, N.; SENOO, S.; NASTASA, V. Physiological evaluation of drought tolerance in Brazilian soybean cultivars: water use efficiency and carbon isotope discrimination. In: SUENAGA, K.; KUDO, H.; OSHIO, S. (Ed.). Comprehensive studies on the development of sustainable soybean production technology in South America. Tsukuba: JIRCAS, 2007. p. 27-33. (JIRCAS Working Report, 51).| Tipo: Capítulo em Livro Técnico-Científico |
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| 117. | | GOUVEA, R. A.; EL-KADRE, H. V.; HANDA, T.; SILVA, M. G.; SARTORI, A. A. C.; NUNES, E. S.; DEBIASI, H.; FRANCHINI, J. C.; SANTOS, E. L. dos. Fertilidade física do solo em diferentes fases de um sistema de integração lavoura-pecuária na região Noroeste do Paraná. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 18., 2023, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2023. (Embrapa Soja. Documentos, 453). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 145-152.| Tipo: Artigo em Anais de Congresso |
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| 118. | | EL-KADRE, H. V.; GOUVEA, R. A.; HANDA, T.; SILVA, M. G.; SARTORI, A. A. C.; FRANCHINI, J. C.; BALBINOT JUNIOR, A. A.; SANTOS, E. L. dos; MADALOSSO, T.; ROY, J. M. T.; TONINI, V.; DEBIASI, H. Fertilidade física do solo e produtividade da soja em reposta a modelos de produção diversificados no Oeste do Paraná. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 18., 2023, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2023. (Embrapa Soja. Documentos, 453). Regina Maria Villas Bôas de Campos Leite, Larissa Alexandra Cardoso Moraes, Kelly Catharin, Editoras Técnicas. p. 153-161.| Tipo: Artigo em Anais de Congresso |
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| 119. | | OLIVEIRA JUNIOR, A. de; CASTRO, C. de; OLIVEIRA, F. A. de; KLEPKER, D. Fertilidade do solo e avaliação do estado nutricional da soja. In: SEIXAS, C. D. S.; NEUMAIER, N.; BALBINOT JUNIOR, A. A.; KRZYZANOWSKI, F. C.; LEITE, R. M. V. B. de C. (Ed.). Tecnologias de produção de soja. Londrina: Embrapa Soja, 2020. (Embrapa Soja. Sistemas de Produção, 17). p. 133-184.| Tipo: Capítulo em Livro Técnico-Científico |
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| 120. | | HUNGRIA, M.; NOGUEIRA, M. A. Fixação biológica de nitrogênio. In: SEIXAS, C. D. S.; NEUMAIER, N.; BALBINOT JUNIOR, A. A.; KRZYZANOWSKI, F. C.; LEITE, R. M. V. B. de C. (Ed.). Tecnologias de produção de soja. Londrina: Embrapa Soja, 2020. (Embrapa Soja. Sistemas de Produção, 17). p. 185-196.| Tipo: Capítulo em Livro Técnico-Científico |
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