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Registro Completo |
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Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
05/09/2005 |
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Data da última atualização: |
05/08/2024 |
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Autoria: |
NESHIC, G.; BORRO, L. C.; HIGA, R. H.; KUSER, P. R.; YAMAGISHI, M. E.; FRANCO, E. H.; KRAUCHENCO, J. N.; FILETO, R.; RIBEIRO, A. A.; BEZERRA, G. B.; VELLUDO, T. M.; JIMENEZ, T. S.; FURUKAWA, N.; TESHIMA, H.; KITAJIMA, K.; BAVA, A.; SARAI, A. TOGAWA, R. C.; MANCINI, A. L. |
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Título: |
The Diamond STING Server. |
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Ano de publicação: |
2005 |
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Fonte/Imprenta: |
Nucleic Acids Research, v. 33, n. 2, p. W29-W35, July 2005. |
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Idioma: |
Inglês |
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Notas: |
Supplement. |
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Conteúdo: |
Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: JavaProtein Dossier (JPD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor?the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS. |
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Palavras-Chave: |
Diamond STING; JavaProtein Dossier; Protein structures; STING. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/178422/1/ID-25540.pdf
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Marc: |
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100 1 $aNESHIC, G.
245 $aThe Diamond STING Server.$h[electronic resource]
260 $c2005
500 $aSupplement.
520 $aDiamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: JavaProtein Dossier (JPD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor?the prediction of such residues. Diamond STING is freely accessible at http://sms.cbi.cnptia.embrapa.br and http://trantor.bioc.columbia.edu/SMS.
653 $aDiamond STING
653 $aJavaProtein Dossier
653 $aProtein structures
653 $aSTING
700 1 $aBORRO, L. C.
700 1 $aHIGA, R. H.
700 1 $aKUSER, P. R.
700 1 $aYAMAGISHI, M. E.
700 1 $aFRANCO, E. H.
700 1 $aKRAUCHENCO, J. N.
700 1 $aFILETO, R.
700 1 $aRIBEIRO, A. A.
700 1 $aBEZERRA, G. B.
700 1 $aVELLUDO, T. M.
700 1 $aJIMENEZ, T. S.
700 1 $aFURUKAWA, N.
700 1 $aTESHIMA, H.
700 1 $aKITAJIMA, K.
700 1 $aBAVA, A.
700 1 $aSARAI, A. TOGAWA, R. C.
700 1 $aMANCINI, A. L.
773 $tNucleic Acids Research$gv. 33, n. 2, p. W29-W35, July 2005.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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| Registros recuperados : 2 | |
| 1. |  | NESHIC, G.; BORRO, L. C.; HIGA, R. H.; KUSER, P. R.; YAMAGISHI, M. E.; FRANCO, E. H.; KRAUCHENCO, J. N.; FILETO, R.; RIBEIRO, A. A.; BEZERRA, G. B.; VELLUDO, T. M.; JIMENEZ, T. S.; FURUKAWA, N.; TESHIMA, H.; KITAJIMA, K.; BAVA, A.; SARAI, A. TOGAWA, R. C.; MANCINI, A. L. The Diamond STING Server. Nucleic Acids Research, v. 33, n. 2, p. W29-W35, July 2005. Supplement.| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 2. | | NESHICH, G.; BORRO, L. C.; HIGA, R. H.; KUSER, P. R.; YAMAGISHI, M. E. B.; FRANCO, E. H.; KRAUCHENCO, J. N.; FILETO, R.; RIBEIRO, A. A.; BEZERRA, G. B. P.; VELLUDO, T. M.; JIMENEZ, T. S.; FURUKAWA, N.; TESHIMA, H.; KITAJIMA, K.; BAVA, A.; SARAI, A.; TOGAWA, R. C.; MANCINI, A. L. The Diamond Sting server. Nucleic Acids Research, v. 33, W29-W35, 2005.| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 2 | |
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