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Biblioteca(s): |
Embrapa Agrobiologia. |
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Data corrente: |
27/09/2022 |
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Data da última atualização: |
27/09/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
FERREIRA, N. dos S.; GONIGLIO, A.; PUENTE, M.; SANTANNA, F. H.; MARONICHE, G.; GARCIA, J.; MOLINA, R.; NIEVAS, S.; VOLPIANO, C. G.; AMBROSINI, A.; PASSAGLIA, L. M. P.; PEDRAZA, R. O.; REIS, V. M.; ZILLI, J. E.; CASSAN, F. |
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Afiliação: |
NATÁLIA DOS SANTOS FERREIRA, UFRRJ; ANAHÍ CONIGLIO, Universidad Nacional de Río Cuarto; MARIANA PUENTE, INTA; FERNANDO HAYASHI SANT'ANNA, PROAD-SUS; GUILLERMO MARONICHE, Universidad Nacional de Mar del Plata; JULIA GARCÍA, INTA; ROMINA MOLINA, UNIVERSIDAD NACIONAL DE RIO CUARTO; SOFIA NIEVAS, UNIVERSIDAD NACIONAL DE RIO CUARTO; CAMILA GAZOLLA VOLPIANO, UFGRS; ADRIANA AMBROSINI, UFRGS; LUCIANE M P PASSAGLIA, UFRGS; RAUL O. PEDRAZA, Universidad Nacional de Tucumán; VERONICA MASSENA REIS, CNPAB; JERRI EDSON ZILLI, CNPAB; FABRICIO CASSAN, Universidad Nacional de Río Cuarto. |
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Título: |
Genome-based reclassification of Azospirillum brasilense Az39 as the type strain of Azospirillum argentinense sp. nov. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
International Journal of Systematic and Evolutionary Microbiology, v. 72, n. 8, aug. 2022. |
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ISSN: |
1466-5034 |
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DOI: |
0.1099/ijsem.0.005475 |
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Idioma: |
Inglês |
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Conteúdo: |
Strain Az39T of Azospirillum is a diazotrophic plant growth-promoting bacterium isolated in 1982 from the roots of wheat plants growing in Marcos Juárez, Córdoba, Argentina. It produces indole-3-acetic acid in the presence of l-tryptophan as a precursor, grows at 20-38 °C (optimal 38 °C), and the cells are curved or spiral-shaped, with diameters ranging from 0.5-0.9 to 1.8-2.2 µm. They contain C16 : 0, C18 : 0 and C18 : 1 ω7c/ω6c as the main fatty acids. Phylogenetic analysis of its 16S rRNA gene sequence confirmed that this strain belongs to the genus Azospirillum, showing a close relationship with Azospirillum baldaniorum Sp245T, Azospirillum brasilense Sp7T and Azospirillum formosense CC-Nfb-7T. Housekeeping gene analysis revealed that Az39T, together with five strains of the genus (Az19, REC3, BR 11975, MTCC4035 and MTCC4036), form a cluster apart from A. baldaniorum Sp245T, A. brasilense Sp7T and A. formosense CC-Nfb-7T. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) between Az39T and the aforementioned type strains revealed values below 96 %, the circumscription limit for the species delineation (ANI: 95.3, 94.1 and 94.0 %; dDDH: 62.9, 56.3 and 55.6 %). Furthermore, a phylogeny evaluation of the core proteome, including 809 common shared proteins, showed an independent grouping of Az39T, Az19, REC3, BR 11975, MTCC4035 and MTCC4036. The G+C content in the genomic DNA of these six strains varied from 68.3 to 68.5 %. Based on the combined phylogenetic, genomic and phenotypic characterization presented here, we consider that strain Az39T, along with strains Az19, REC3, BR 11975, MTCC4035 and MTCC4036, are members of a new Azospirillum species, for which the name Azospirillum argentinense sp. nov. is proposed. The type strain is Az39T (=LBPCV39T=BR 148428T=CCCT 22.01T). MenosStrain Az39T of Azospirillum is a diazotrophic plant growth-promoting bacterium isolated in 1982 from the roots of wheat plants growing in Marcos Juárez, Córdoba, Argentina. It produces indole-3-acetic acid in the presence of l-tryptophan as a precursor, grows at 20-38 °C (optimal 38 °C), and the cells are curved or spiral-shaped, with diameters ranging from 0.5-0.9 to 1.8-2.2 µm. They contain C16 : 0, C18 : 0 and C18 : 1 ω7c/ω6c as the main fatty acids. Phylogenetic analysis of its 16S rRNA gene sequence confirmed that this strain belongs to the genus Azospirillum, showing a close relationship with Azospirillum baldaniorum Sp245T, Azospirillum brasilense Sp7T and Azospirillum formosense CC-Nfb-7T. Housekeeping gene analysis revealed that Az39T, together with five strains of the genus (Az19, REC3, BR 11975, MTCC4035 and MTCC4036), form a cluster apart from A. baldaniorum Sp245T, A. brasilense Sp7T and A. formosense CC-Nfb-7T. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) between Az39T and the aforementioned type strains revealed values below 96 %, the circumscription limit for the species delineation (ANI: 95.3, 94.1 and 94.0 %; dDDH: 62.9, 56.3 and 55.6 %). Furthermore, a phylogeny evaluation of the core proteome, including 809 common shared proteins, showed an independent grouping of Az39T, Az19, REC3, BR 11975, MTCC4035 and MTCC4036. The G+C content in the genomic DNA of these six strains varied from 68.3 to 68.5 %. Based on the comb... Mostrar Tudo |
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Palavras-Chave: |
Proteome core. |
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Thesaurus Nal: |
Azospirillum; Phylogeny. |
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Categoria do assunto: |
S Ciências Biológicas |
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Marc: |
LEADER 02871naa a2200349 a 4500
001 2146886
005 2022-09-27
008 2022 bl uuuu u00u1 u #d
022 $a1466-5034
024 7 $a0.1099/ijsem.0.005475$2DOI
100 1 $aFERREIRA, N. dos S.
245 $aGenome-based reclassification of Azospirillum brasilense Az39 as the type strain of Azospirillum argentinense sp. nov.$h[electronic resource]
260 $c2022
520 $aStrain Az39T of Azospirillum is a diazotrophic plant growth-promoting bacterium isolated in 1982 from the roots of wheat plants growing in Marcos Juárez, Córdoba, Argentina. It produces indole-3-acetic acid in the presence of l-tryptophan as a precursor, grows at 20-38 °C (optimal 38 °C), and the cells are curved or spiral-shaped, with diameters ranging from 0.5-0.9 to 1.8-2.2 µm. They contain C16 : 0, C18 : 0 and C18 : 1 ω7c/ω6c as the main fatty acids. Phylogenetic analysis of its 16S rRNA gene sequence confirmed that this strain belongs to the genus Azospirillum, showing a close relationship with Azospirillum baldaniorum Sp245T, Azospirillum brasilense Sp7T and Azospirillum formosense CC-Nfb-7T. Housekeeping gene analysis revealed that Az39T, together with five strains of the genus (Az19, REC3, BR 11975, MTCC4035 and MTCC4036), form a cluster apart from A. baldaniorum Sp245T, A. brasilense Sp7T and A. formosense CC-Nfb-7T. Average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) between Az39T and the aforementioned type strains revealed values below 96 %, the circumscription limit for the species delineation (ANI: 95.3, 94.1 and 94.0 %; dDDH: 62.9, 56.3 and 55.6 %). Furthermore, a phylogeny evaluation of the core proteome, including 809 common shared proteins, showed an independent grouping of Az39T, Az19, REC3, BR 11975, MTCC4035 and MTCC4036. The G+C content in the genomic DNA of these six strains varied from 68.3 to 68.5 %. Based on the combined phylogenetic, genomic and phenotypic characterization presented here, we consider that strain Az39T, along with strains Az19, REC3, BR 11975, MTCC4035 and MTCC4036, are members of a new Azospirillum species, for which the name Azospirillum argentinense sp. nov. is proposed. The type strain is Az39T (=LBPCV39T=BR 148428T=CCCT 22.01T).
650 $aAzospirillum
650 $aPhylogeny
653 $aProteome core
700 1 $aGONIGLIO, A.
700 1 $aPUENTE, M.
700 1 $aSANTANNA, F. H.
700 1 $aMARONICHE, G.
700 1 $aGARCIA, J.
700 1 $aMOLINA, R.
700 1 $aNIEVAS, S.
700 1 $aVOLPIANO, C. G.
700 1 $aAMBROSINI, A.
700 1 $aPASSAGLIA, L. M. P.
700 1 $aPEDRAZA, R. O.
700 1 $aREIS, V. M.
700 1 $aZILLI, J. E.
700 1 $aCASSAN, F.
773 $tInternational Journal of Systematic and Evolutionary Microbiology$gv. 72, n. 8, aug. 2022.
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| 1. |  | MO, L.; CROWTHER, T. W.; MAYNARD, D. S.; HOOGEN, J. V. D.; MA, H.; BIALIC-MURPHY, L.; LIANG, J.; DE-MIGUEL, S.; NABUURS, G.; REICH, P. B.; PHILLIPS, O. L.; ABEGG, M.; YAO, Y. C. A.; ALBERTI, G.; ZAMBRANO, A. M. A.; ALVARADO, B. V.; ALVAREZ-DÁVILA, E.; ALVAREZ-LOAYZA, P.; ALVES, L. F.; AMARAL, I.; AMMER, C.; ANTÓN-FERNÁNDEZ, C.; ARAUJO-MURAKAMI, A.; ARROYO, L.; AVITABILE, V.; AYMARD, G. A.; BAKER, T. R.; BAŁAZY, R.; BANKI, O.; BARROSO, J. G.; BASTIAN, M. L.; BASTIN, J.; BIRIGAZZI, L.; BIRNBAUM, P.; BITARIHO, R.; BOECKX, P.; BONGERS, F.; BOONMAN, C. C. F.; BOURIAUD, O.; BRANCALION, P. H. S.; BRANDL, S.; BREARLEY, F. Q.; BRIENEN, R.; BROADBENT, E. N.; BRUELHEIDE, H.; BUSSOTTI, F.; GATTI, R. C.; CÉSAR, R. G.; CESLJAR, G.; CHAZDON, R.; CHEN, H. Y. H.; CHISHOLM, C.; CHO, H.; CIENCIALA, E.; CLARK, C.; CLARK, D.; COLLETTA, G. D.; COOMES, D. A.; VALVERDE, F. C.; CORRAL-RIVAS, J. J.; CRIM, P. M.; CUMMING, J. R.; DAYANANDAN, S.; GASPER, A. L. de; DECUYPER, M.; DERROIRE, G.; DEVRIES, B.; DJORDJEVIC, I.; DOLEZAL, J.; DOURDAIN, A.; OBIANG, N. L. E.; ENQUIST, B. J.; EYRE, T. J.; FANDOHAN, A. B.; FAYLE, T. M.; FELDPAUSCH, T. R.; FERREIRA, L. V.; FINÉR, L.; FISCHER, M.; FLETCHER, C.; FRIZZERA, L.; GAMARRA, J. G. P.; GIANELLE, D.; GLICK, H. B.; HARRIS, D. J.; HECTOR, A.; HEMP, A.; HENGEVELD, G.; HÉRAULT, B.; HERBOHN, J. L.; HEROLD, M.; HIETZ, P.; HILLERS, A.; CORONADO, E. N. H.; HUI, C.; IBANEZ, T.; IMAI, N.; JAGODZIŃSKI, A. M.; JAROSZEWICZ, B.; JOHANNSEN, V. K.; JOLY, C. A.; JUCKER, T.; JUNG, I.; KARMINOV, V.; KARTAWINATA, K.; KEARSLEY, E.; KENFACK, D.; KENNARD, D. K.; KEPFER-ROJAS, S.; KEPPEL, G.; KHAN, M. L.; KILLEEN, T. J.; KIM, H. S.; KITAYAMA, K.; KÖHL, M.; KORJUS, H.; KRAXNER, F.; KUCHER, D.; LAARMANN, D.; LANG, M.; LEWIS, S. L.; LI, Y.; LOPEZ-GONZALEZ, G.; LU, H.; LUKINA, N. V.; MAITNER, B. S.; MALHI, Y.; MARCON, E.; MARIMON, B. S.; MARIMON-JUNIOR, B. H.; MARSHALL, A. R.; MARTIN, E. H.; MCCARTHY, J. K.; MEAVE, J. A.; MELO-CRUZ, O.; MENDOZA, C.; MENDOZA-POLO, I.; MISCICKI, S.; MEROW, C.; MENDOZA, A. M.; MORENO, V. S.; MUKUL, S. A.; MUNDHENK, P.; NAVA-MIRANDA, M. G.; NEILL, D.; NELDNER, V. J.; NEVENIC, R. V.; NGUGI, M. R.; NIKLAUS, P. A.; ONTIKOV, P.; ORTIZ-MALAVASI, E.; PAN, Y.; PAQUETTE, A.; PARADA-GUTIERREZ, A.; PARFENOVA, E. I.; PARK, M.; PARREN, M.; PARTHASARATHY, N.; PERI, P. L.; PFAUTSCH, S.; PICARD, N.; PIEDADE, M. T. F.; PIOTTO, D.; PITMAN, N. C. A.; POORTER, L.; POULSEN, A. D.; POULSEN, J. R.; PRETZSCH, H.; AREVALO, F. R.; RESTREPO-CORREA, Z.; RICHARDSON, S. J.; RODEGHIERO, M.; ROLIM, S. G.; ROOPSIND, A.; ROVERO, F.; RUTISHAUSER, E.; SAIKIA, P.; SALAS-ELJATIB, C.; SANER, P.; SCHALL, P.; SCHELHAAS, M.; SCHEPASCHENKO, D.; SCHERER-LORENZEN, M.; SCHMID, B.; SCHÖNGART, J.; SEARLE, E. B.; SEBEN, V.; SERRA-DIAZ, J. M.; SHEIL, D.; SHVIDENKO, A. Z.; SILVA, A. C. da; SILVA-ESPEJO, J. E.; SILVEIRA, M.; SINGH, J.; SIST, P.; SLIK, F.; SONKÉ, B.; SOSINSKI JUNIOR, E. E.; SOUZA, A. F.; STEREŃCZAK, K. J.; SVENNING, J.; SVOBODA, M.; SWANEPOEL, B.; TARGHETTA, N.; TCHEBAKOVA, N.; STEEGE, H. T.; THOMAS, R.; TIKHONOVA, E.; UMUNAY, P. M.; USOLTSEV, V. A.; VALENCIA, R.; VALLADARES, F.; BODEGOM, P. M. V.; PLAS, F. V. D.; DO, T. V.; NULAND, M. E. V.; VASQUEZ, R. M.; VERBEECK, H.; VIANA, H.; VIBRANS, A. C.; VIEIRA, S.; GADOW, K. V.; WANG, H.; WATSON, J. V.; WERNER, G. D. A.; WITTMANN, F.; WOELL, H.; WORTEL, V.; ZAGT, R.; ZAWIŁA-NIEDŹWIECKI, T.; ZHANG, C.; ZHAO, X.; ZHOU, M.; ZHU, Z.; ZO-BI, I. C.; ZOHNER, C. M. The global distribution and drivers of wood density and their impact on forest carbon stocks. Nature Ecology & Evolution, v. 8, n. 12, p. 2195-2212, 2024.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
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