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Registro Completo |
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Biblioteca(s): |
Embrapa Agroenergia; Embrapa Amazônia Ocidental; Embrapa Milho e Sorgo. |
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Data corrente: |
02/12/2020 |
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Data da última atualização: |
11/01/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
PEREIRA, V. M.; FERREIRA FILHO, J. A.; LEAO, A. P.; VARGAS, L. H. G.; FARIAS, M. P. de; RIOS, S. de A.; CUNHA, R. N. V. da; FORMIGHIERI, E. F.; ALVES, A. A.; SOUZA JUNIOR, M. T. |
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Afiliação: |
Valquíria Martins Pereira, Universidade Federal de Lavras; Jaire Alves Ferreira Filho, Universidade Federal de Lavras; ANDRE PEREIRA LEAO, CNPAE; Luiz Henrique Galli Vargas, Universidade Federal de Lavras; Marcelo Picanço de Farias, Universidade Federal de Lavras; SARA DE ALMEIDA RIOS, CNPMS; RAIMUNDO NONATO VIEIRA DA CUNHA, CPAA; EDUARDO FERNANDES FORMIGHIERI, CNPAE; ALEXANDRE ALONSO ALVES, CNPAE; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE. |
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Título: |
American oil palm from Brazil: Genetic diversity, population structure, and core collection. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Crop Science, v. 60, p. 3212-3227, Nov./Dec. 2020. |
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Descrição Física: |
il. |
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DOI: |
https://doi.org/10.1002/csc2.20276 |
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Idioma: |
Inglês |
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Conteúdo: |
The American oil palm [Elaeis oleifera (Knuth) Cortés] has pronounced importance in oil palm breeding programs. Here, a germplasm bank (GB) of E. oleifera plants collected in the Amazon rainforest in Brazil was submitted to single nucleotide polymorphism (SNP) marker identification, selection, and use, aiming to characterize genetic diversity and population structure and to design a core collection (CC). Five hundred and fifty-three plants from 206 subsamples, collected at 19 localities spread throughout six geographic regions, were submitted to genotyping-by-sequencing analysis. A set of 1,827 high-quality SNP markers was then selected and used to run the genetic diversity and population structure analysis. The genetic diversity found is of moderate degree, and probably only a small portion of the species diversity is represented in the collection. The possible reason for that is the collecting strategy used, which collected subsamples only around the most prominent watercourses in the region. The average degree of genetic differentiation among subsamples is very high, indicating the presence of high interpopulation differentiation. The collection showed a low level of endogamy. The low average gene flow found indicates that genetic isolation caused by drift is occurring, and there is a need to review the conservation strategy. A set of 245 SNPs distributed throughout all 16 chromosomes was used to design CC based on maximizing the strategy of diversity. The optimal adjustment of the validated parameters, maintained while taking fewest subsamples, led to the choice of a model containing 20% of the entire collection as the ideal to form the CC. MenosThe American oil palm [Elaeis oleifera (Knuth) Cortés] has pronounced importance in oil palm breeding programs. Here, a germplasm bank (GB) of E. oleifera plants collected in the Amazon rainforest in Brazil was submitted to single nucleotide polymorphism (SNP) marker identification, selection, and use, aiming to characterize genetic diversity and population structure and to design a core collection (CC). Five hundred and fifty-three plants from 206 subsamples, collected at 19 localities spread throughout six geographic regions, were submitted to genotyping-by-sequencing analysis. A set of 1,827 high-quality SNP markers was then selected and used to run the genetic diversity and population structure analysis. The genetic diversity found is of moderate degree, and probably only a small portion of the species diversity is represented in the collection. The possible reason for that is the collecting strategy used, which collected subsamples only around the most prominent watercourses in the region. The average degree of genetic differentiation among subsamples is very high, indicating the presence of high interpopulation differentiation. The collection showed a low level of endogamy. The low average gene flow found indicates that genetic isolation caused by drift is occurring, and there is a need to review the conservation strategy. A set of 245 SNPs distributed throughout all 16 chromosomes was used to design CC based on maximizing the strategy of diversity. The optimal adjustm... Mostrar Tudo |
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Palavras-Chave: |
American oil palm; Brazilian Elaeis oleifera; Diversidade genética. |
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Thesagro: |
Banco de Germoplasma; Dendê; Melhoramento Genético Vegetal; Óleo. |
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Thesaurus Nal: |
Breeding and Genetic Improvement; Genetic improvement. |
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Categoria do assunto: |
-- |
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URL: |
https://www.alice.cnptia.embrapa.br/alice/bitstream/doc/1127457/1/American-oil-palm-2020.pdf
https://www.alice.cnptia.embrapa.br/alice/bitstream/doc/1127527/1/American-oil.pdf
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Marc: |
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008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1002/csc2.20276$2DOI
100 1 $aPEREIRA, V. M.
245 $aAmerican oil palm from Brazil$bGenetic diversity, population structure, and core collection.$h[electronic resource]
260 $c2020
300 $cil.
520 $aThe American oil palm [Elaeis oleifera (Knuth) Cortés] has pronounced importance in oil palm breeding programs. Here, a germplasm bank (GB) of E. oleifera plants collected in the Amazon rainforest in Brazil was submitted to single nucleotide polymorphism (SNP) marker identification, selection, and use, aiming to characterize genetic diversity and population structure and to design a core collection (CC). Five hundred and fifty-three plants from 206 subsamples, collected at 19 localities spread throughout six geographic regions, were submitted to genotyping-by-sequencing analysis. A set of 1,827 high-quality SNP markers was then selected and used to run the genetic diversity and population structure analysis. The genetic diversity found is of moderate degree, and probably only a small portion of the species diversity is represented in the collection. The possible reason for that is the collecting strategy used, which collected subsamples only around the most prominent watercourses in the region. The average degree of genetic differentiation among subsamples is very high, indicating the presence of high interpopulation differentiation. The collection showed a low level of endogamy. The low average gene flow found indicates that genetic isolation caused by drift is occurring, and there is a need to review the conservation strategy. A set of 245 SNPs distributed throughout all 16 chromosomes was used to design CC based on maximizing the strategy of diversity. The optimal adjustment of the validated parameters, maintained while taking fewest subsamples, led to the choice of a model containing 20% of the entire collection as the ideal to form the CC.
650 $aBreeding and Genetic Improvement
650 $aGenetic improvement
650 $aBanco de Germoplasma
650 $aDendê
650 $aMelhoramento Genético Vegetal
650 $aÓleo
653 $aAmerican oil palm
653 $aBrazilian Elaeis oleifera
653 $aDiversidade genética
700 1 $aFERREIRA FILHO, J. A.
700 1 $aLEAO, A. P.
700 1 $aVARGAS, L. H. G.
700 1 $aFARIAS, M. P. de
700 1 $aRIOS, S. de A.
700 1 $aCUNHA, R. N. V. da
700 1 $aFORMIGHIERI, E. F.
700 1 $aALVES, A. A.
700 1 $aSOUZA JUNIOR, M. T.
773 $tCrop Science$gv. 60, p. 3212-3227, Nov./Dec. 2020.
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Registro original: |
Embrapa Agroenergia (CNPAE) |
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Biblioteca |
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| Registros recuperados : 10 | |
| 3. |  | VARGAS, L. H. G.; LEAO, A. P.; FARIAS. P. de F.; ALVES, A. A.; FORMIGHIERI, E. F.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Avaliação da fragmentação do DNA genômico de Elaeis guineensis Jacq e Elaeis oleífera (Kunth) Corté por meio de ondas sonoras de alta frequência e autoclavagem. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginado.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 4. | | VARGAS, L. H. G.; LEAO, A. P.; FARIAS, M. P.; ALVES, A. A.; FORMIGHIERI, E. F.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Estabelecimento de um protocolo eficiente para extração de rna a partir de folhas jovens de elaeis guineensis jacq. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginado| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 5. | | LEAO, A. P.; VARGAS, L. H. G.; FARIAS, M. P.; FORMIGHIERI, E. F.; ALVES, A. A.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Estabelecimento de curva de melting para elaeis guineenses jacq. e elaeis oleífera (kunth) cortés. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginado| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 6. | | FARIAS, M. P.; VARGAS, L. H. G.; LEAO, A. P.; FORMIGHIERI, E. F.; ALVES, A. A.; CAPDEVILLE, G. de; SOUZA JUNIOR, M. T. Determinação de estádios meióticos em elaeis oleifera (kunth) cortés. In: WORKSHOP AGROENERGIA, 6., 2012, Ribeirão Preto, SP. Anais... Ribeirão Preto: APTA; Campinas: IAC, 2012. Não paginado| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 7. | | VARGAS. L. H. G.; RIBEIRO, J. A. de A.; SIFUENTES, D. N.; OLIVEIRA, A. E.; SOUZA JUNIOR, M. T.; RODRIGUES, C. M.; ABDELNUR, P. V. Metabolomics of elaeis guineensis leaves: from optimization of the sample preparation steps to untarged metabolite profiling alidis. In: ASMS CONFERENCE ON MASS SPECTROMETRY AND ALLIED TOPICS, 61., 2013, Minneapolis. [Proceedings...]. Santa Fe: American Society for Mass Spectrometry, 2013.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 8. | | PEREIRA, V. M.; FERREIRA FILHO, J. A.; LEAO, A. P.; VARGAS, L. H. G.; FARIAS, M. P. de; RIOS, S. de A.; CUNHA, R. N. V. da; FORMIGHIERI, E. F.; ALVES, A. A.; SOUZA JUNIOR, M. T. American oil palm from Brazil: Genetic diversity, population structure, and core collection. Crop Science, v. 60, p. 3212-3227, Nov./Dec. 2020. il.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Amazônia Ocidental; Embrapa Milho e Sorgo. |
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| 9. | | RODRIGUES NETO, J. C.; VARGAS, L. H. G.; RIBEIRO, J. A. de A.; SILVA, M. E. R. da; SOUZA JUNIOR, M. T.; RODRIGUES, C. M.; OLIVEIRA, A. E. de; ABDELNUR, P. V. Impressão digital metabólica de folhas de Elaeis guineensis em diferentes condições de preparo de amostra utilizando UHPLC-MS. In: ENCONTRO DE PESQUISA E INOVAÇÃO DA EMBRAPA AGROENERGIA, 3., 2016, Brasília, DF. Anais ... Brasília, DF: Embrapa, 2016. p. 237-245.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 10. | | VARGAS, L. H. G.; RODRIGUES NETO, J. C.; RIBEIRO, J. A. de A.; RICCI-SILVA, M. E.; SOUZA JUNIOR, M. T.; RODRIGUES, C. M.; OLIVEIRA, A. E. DE; ABDELNUR, P. V. Metabolomics analysis of oil palm (Elaeis guineensis) leaf: evaluation of sample preparation steps using UHPLC-MS/MS. Metabolomics, v. 12, n. 10, artigo número 153, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia. |
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| Registros recuperados : 10 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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