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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura. |
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Data corrente: |
13/05/2020 |
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Data da última atualização: |
15/07/2020 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
CARMO, C. D. do; SOUSA, M. B. e; BRITO, A. C.; OLIVEIRA, E. J. de. |
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Afiliação: |
CÁTIA DIAS DO CARMO; MASSAINE BANDEIRA E SOUSA; ANA CARLA BRITO; EDER JORGE DE OLIVEIRA, CNPMF. |
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Título: |
Genome-wide association studies for waxy starch in cassava. |
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Ano de publicação: |
2020 |
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Fonte/Imprenta: |
Euphytica, v. 216, n. 82, 2020. |
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DOI: |
https://doi.org/10.1007/s10681-020-02615- |
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Idioma: |
Português |
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Conteúdo: |
Cassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this work may drive further studies and reveal biological processes related to the waxy phenotype. MenosCassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this w... Mostrar Tudo |
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Thesagro: |
Mandioca. |
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Thesaurus Nal: |
Cassava. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 02137naa a2200193 a 4500
001 2122286
005 2020-07-15
008 2020 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1007/s10681-020-02615-$2DOI
100 1 $aCARMO, C. D. do
245 $aGenome-wide association studies for waxy starch in cassava.$h[electronic resource]
260 $c2020
520 $aCassava (Manihot esculenta Crantz) is an important crop for starch production, and recently much effort has been directed towards improving its starch properties. Waxy cassava starch has some advantages over starch from other sources due to its neutral flavor and pasting properties. The genetic inheritance of the waxy starch phenotype is considered to be monogenic and recessive; however, it is possible that other genomic regions contribute to the waxy phenotype. The aim of this study was to evaluate the power of genome-wide association studies (GWAS) to detect variants related to waxy starch and to identify alternative genes or genomic regions. For this purpose, a set of 382 samples (waxy and non-waxy) was analyzed using a panel of 20,956 single nucleotide polymorphisms (SNPs). All genotypes were evaluated in relation to the presence of waxy starch, determined using the 2% iodine test. The GWAS was performed using the retrospective CAse?control Retrospective Association Testing (CARAT) model. Kinship and population structure were also investigated and added to the model. Ten SNPs were found to be significant and located on chromosome 2 and co-located in genomic regions. The significant SNPs are in a region near the Granule-bound starch synthase I (GBSSI) and Beta-amylase genes. Additive and epistatic effects were also found among the significant SNPs, and these need to be better investigated in segregant populations of waxy sources. The regions and genes identified in this work may drive further studies and reveal biological processes related to the waxy phenotype.
650 $aCassava
650 $aMandioca
700 1 $aSOUSA, M. B. e
700 1 $aBRITO, A. C.
700 1 $aOLIVEIRA, E. J. de
773 $tEuphytica$gv. 216, n. 82, 2020.
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Registro original: |
Embrapa Mandioca e Fruticultura (CNPMF) |
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| Registros recuperados : 11 | |
| 6. |  | TOMAS, W. M.; CHIARAVALOTTI, R. M.; CAMILO, A. R.; FREITAS, G. O. de. Kinosternon scorpioides scorpioides Linnaeus, 1766: range extension and first records in the upper Paraguay River basin and Mato Grosso do Sul, Brazil. Check List, v. 11, n. 3, april, 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Pantanal. |
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| 8. | | NUNES, A. P.; POSSO, S. R.; FROTA, A. V. B da; VITORINO, B. D; LAPS, R. R.; DONATELLI, R. J.; STRAUBE, F. C.; PIVATTO, M. A. C.; OLIVEIRA, D. M. M. de; CARLOS, B.; MELO, A. V. de; TOMAS, W. M.; FREITAS, G. O. de; SOUZA, R, A. D. de; BENITES, M.; MAMEDE, S.; MOREIRA, R. S. Birds of the Pantanal floodplains, Brazil: historical data, diversity, and conservation. Papéis Avulsos de Zoologia, v.61, e20216182, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Pantanal. |
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| 9. | | NUNES, A. P.; STRAUBE, F. C.; POSSO, S. R.; LAPS, R. R.; VASCONCELOS, M. F. de; HOFFMANN, D.; MORANTE FILHO, J. C.; DONATELLI, R. J.; RAGUSA NETTO, J.; FAXINA, C.; GODOI, M. N.; URBEN FILHO, A.; CASTRO, S. L. R. de; LOPES, E. V.; ANJOS, L. dos; TOMAS, W. M.; MENDONÇA, L. B.; SILVA, P. A.; PIVATTO, M. A. de C.; COSTACURTA, M. de B.; MELO, A. V.; HASS, A.; BRAZ, V. da S.; MÓDENA, E. de S.; FREITAS, G. O. de; SOUZA, R. A. D. de; BENITES, M.; MAMEDE, S.; MENQ, W. Checklist of the birds of Mato Grosso do Sul state, Brazil: diversity and conservation. Papéis Avulsos de Zoologia, v. 62, e202262029, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Pantanal. |
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| 10. | | TOMAS, W. M.; BERLINCK, C. N.; CHIARAVALLOTI, R. M.; FAGGIONI, G. P.; STRÜSSMANN, C.; LIBONATI, R.; ABRAHÃO, C. R.; ALVARENGA, G. do V.; BACELLAR, A. E. de F.; BATISTA, F. R. de Q.; BORNATO, T. S.; CAMILO, A. R.; CASTEDO, J.; FERNANDO, A. M. E.; FREITAS, G. O. de; GARCIA, C. M.; GONÇALVES, H. S.; GUILHERME, M. B. de F.; LAYME, V. M. G.; LUSTOSA, A. P. G.; OLIVEIRA, A. C. de; OLIVEIRA, M. da R.; PEREIRA, A. de M. M.; RODRIGUES, J. A.; SEMEDO, T. B. F.; SOUZA, R. A. D. de; TORTATO, F. R.; VIANA, D. F. P.; VICENTE - SILVA, L.; MORATO, R. Distance sampling surveys reveal 17 million vertebrates directly killed by the 2020's wildfires in the Pantanal, Brazil. Scientific Reports, v. 11, 23547, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pantanal. |
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| 11. | | TOMAS, W. M.; ROQUE, F. de O.; MORATO, R. G.; MÉDICI, P. E.; CHIARAVALLOTI, R. M.; TORTATO, F. R.; PENHA, J. M. F.; IZZO, T. J.; GARCIA, L. C.; LOURIVAL, R. F. F.; GIRARD, P.; ALBUQUERQUE, N. R.; ALMEIDA-GOMES, M.; ANDRADE, M. H. DA S.; ARAÚJO, F. A. S.; ARAÚJO, A. C.; ARRUDA, E. C. DE.; ASSUNÇÃO, V. A.; BATTIROLA, L. D.; BENITES, M.; BOLZAN, F. P.; BOOCK, J. C.; BORTOLOTTO, I. M.; BRASIL, M. DA S.; CAMILO, A. R.; CAMPOS, Z.; CARNIELLO, M. A.; CATELLA, A. C.; CHEIDA, C. C.; CRAWSHAW JR. P. G.; CRISPIM, S. M. A.; DAMASCENO JUNIOR, G. A.; DESBIEZ, A. L. J.; DIAS, F. A.; EATON, D. P.; FAGGIONI, G. P.; FARINACCIO, M. A.; FERNANDES, J. F. A.; FERREIRA, V. L.; FISCHER, E. A.; FRAGOSO, C. E.; FREITAS, G. O.; GALVANI, F.; GARCIA, A. S.; GARCIA, C. M.; GRACIOLLI, G.; GUARIENTO, R. D.; GUEDES, N. M. R.; GUERRA, A.; HERRERA, H. M.; HOOGESTEIJN, R.; IKEDA, S. C.; JULIANO, R. S.; KANTEK, D. L. Z. K.; KEUROGHLIAN, A.; LACERDA, A. C. R.; LACERDA, A. L. R.; LANDEIRO, V. L.; LAPS, R. R.; LAYME, V.; LEIMGRUBER, P.; ROCHA, F. L.; MAMEDE, S.; MARQUES, D. K. S.; MARQUES, M. I.; MATEUS, L. A. F.; MORAES R. N.; MOREIRA, T. A.; MOURAO, G.; NICOLA, R. D.; NOGUEIRA, D. G.; NUNES, A. P.; CUNHA, C. N. DA.; OLIVEIRA, M. D. de; OLIVEIRA, M. R.; PAGGI, G. M.; PELLEGRIN, A. O.; PEREIRA, G. M. F.; PERES, I. A. H. F. S.; PINHO, J. B.; POTT, A.; PROVETE, D. B.; REIS, V. D. A. dos; REIS, L. K. DOS; RENAUD, P. C.; RIBEIRO, D. B.; ROSSETTO, O. C.; SABINO, J.; RUMIZ, D.; SALIS, S. M.; SANTANA, D. J.; SANTOS, S. A.; SARTORI, Â. L.; SATO, M.; SCHUCHMANN, K-L.; SCREMIN-DIAS, E.; SEIXAS, G. H. F.; SEVERO-NETO, F.; SIGRIST, M. R.; SILVA, A.; SILVA, C. J.; SIQUEIRA, A. L.; SORIANO, B. M. A.; SOUSA, L. M.; SOUZA, F. L.; STRUSSMANN, C.; SUGAI, L. S. M.; TOCANTINS, N.; URBANETZ, C.; VALENTE-NETO, F.; VIANA, D. P.; YANOSKY, A.; JUNK, W. J. Sustainability Agenda for the Pantanal Wetland: Perspectives on a Collaborative Interface for Science, Policy, and Decision-Making. Tropical Conservation Science, v. 12, p. 1-30, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Pantanal. |
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| Registros recuperados : 11 | |
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