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 | Acesso ao texto completo restrito à biblioteca da Embrapa Suínos e Aves. Para informações adicionais entre em contato com cnpsa.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Suínos e Aves. |
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Data corrente: |
04/10/2019 |
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Data da última atualização: |
04/10/2019 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
MOREIRA, G. C. M.; SALVIAN, M.; BOSCHIERO, C.; CESAR, A. S. M.; REECY, J. M.; GODOY, T. F.; LEDUR, M. C.; GARRICK, D.; MOURÃO, G. B.; COUTINHO, L. L. |
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Afiliação: |
GABRIEL COSTA MONTEIRO MOREIRA, ESALQ; MAYARA SALVIAN, ESALQ; CLARISSA BOSCHIERO, ESALQ; ALINE SILVA MELLO CESAR, ESALQ; JAMES M. REECY, Iowa State University/Department of Animal Science; THAIS FERNANDA GODOY, ESALQ; MONICA CORREA LEDUR, CNPSA; DORIAN J. GARRICK, Massey University/ School of Agriculture; GERSON BARRETO MOURÃO, ESALQ; LUIZ LEHMMAN COUTINHO, ESALQ. |
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Título: |
Genome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens. |
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Ano de publicação: |
2019 |
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Fonte/Imprenta: |
BMC Genomics, v. 20, n. 669, 2019. |
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DOI: |
10.1186/s12864-019-6040-3 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract Background: Poultry breeding programs have been focused on improvement of growth and carcass traits, however, this has resulted in correlated changes in internal organ weights and increased incidence of metabolic disorders. These disorders can affect feed efficiency or even cause death. We used a high density SNP array (600 K, Affymetrix) to estimate genomic heritability, perform genome-wide association analysis, and identify genomic regions and positional candidate genes (PCGs) associated with internal organ traits in an F2 chicken population. We integrated knowledge of haplotype blocks, selection signature regions and sequencing data to refine the list of PCGs. Results: Estimated genomic heritability for internal organ traits in chickens ranged from low (LUNGWT, 0.06) to high (GIZZWT, 0.45). A total of 20 unique 1 Mb windows identified on GGA1, 2, 4, 7, 12, 15, 18, 19, 21, 27 and 28 were significantly associated with intestine length, and weights or percentages of liver, gizzard or lungs. Within these windows, 14 PCGs were identified based on their biological functions: TNFSF11, GTF2F2, SPERT, KCTD4, HTR2A, RB1, PCDH7, LCORL, LDB2, NR4A2, GPD2, PTPN11, ITGB4 and SLC6A4. From those genes, two were located within haplotype blocks and three overlapped with selection signature regions. A total of 13,748 annotated sequence SNPs were in the 14 PCGs, including 156 SNPs in coding regions (124 synonymous, 26 non-synonymous, and 6 splice variants). Seven deleterious SNPs were identified in TNFSF11, NR4A2 or ITGB4 genes. Conclusions: The results from this study provide novel insights to understand the genetic architecture of internal organ traits in chickens. The QTL detection performed using a high density SNP array covered the whole genome allowing the discovery of novel QTL associated with organ traits. We identified PCGs within the QTL involved in biological processes that may regulate internal organ growth and development. Potential functional genetic variations were identified generating crucial information that, after validation, might be used in poultry breeding programs to reduce the occurrence of metabolic disorders. MenosAbstract Background: Poultry breeding programs have been focused on improvement of growth and carcass traits, however, this has resulted in correlated changes in internal organ weights and increased incidence of metabolic disorders. These disorders can affect feed efficiency or even cause death. We used a high density SNP array (600 K, Affymetrix) to estimate genomic heritability, perform genome-wide association analysis, and identify genomic regions and positional candidate genes (PCGs) associated with internal organ traits in an F2 chicken population. We integrated knowledge of haplotype blocks, selection signature regions and sequencing data to refine the list of PCGs. Results: Estimated genomic heritability for internal organ traits in chickens ranged from low (LUNGWT, 0.06) to high (GIZZWT, 0.45). A total of 20 unique 1 Mb windows identified on GGA1, 2, 4, 7, 12, 15, 18, 19, 21, 27 and 28 were significantly associated with intestine length, and weights or percentages of liver, gizzard or lungs. Within these windows, 14 PCGs were identified based on their biological functions: TNFSF11, GTF2F2, SPERT, KCTD4, HTR2A, RB1, PCDH7, LCORL, LDB2, NR4A2, GPD2, PTPN11, ITGB4 and SLC6A4. From those genes, two were located within haplotype blocks and three overlapped with selection signature regions. A total of 13,748 annotated sequence SNPs were in the 14 PCGs, including 156 SNPs in coding regions (124 synonymous, 26 non-synonymous, and 6 splice variants). Seven deleterious SNPs we... Mostrar Tudo |
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Palavras-Chave: |
Deleterious mutations; Genomic heritability; GWAS; Metabolic disorders. |
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Thesagro: |
Avicultura; Genética Animal; Genoma; Melhoramento Genético Animal. |
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Thesaurus Nal: |
Genomics; Gizzard; Heart; Intestines; Liver; Lungs; Metabolic diseases. |
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Categoria do assunto: |
-- |
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Marc: |
LEADER 03326naa a2200421 a 4500
001 2112783
005 2019-10-04
008 2019 bl uuuu u00u1 u #d
024 7 $a10.1186/s12864-019-6040-3$2DOI
100 1 $aMOREIRA, G. C. M.
245 $aGenome-wide association scan for QTL and their positional candidate genes associated with internal organ traits in chickens.$h[electronic resource]
260 $c2019
520 $aAbstract Background: Poultry breeding programs have been focused on improvement of growth and carcass traits, however, this has resulted in correlated changes in internal organ weights and increased incidence of metabolic disorders. These disorders can affect feed efficiency or even cause death. We used a high density SNP array (600 K, Affymetrix) to estimate genomic heritability, perform genome-wide association analysis, and identify genomic regions and positional candidate genes (PCGs) associated with internal organ traits in an F2 chicken population. We integrated knowledge of haplotype blocks, selection signature regions and sequencing data to refine the list of PCGs. Results: Estimated genomic heritability for internal organ traits in chickens ranged from low (LUNGWT, 0.06) to high (GIZZWT, 0.45). A total of 20 unique 1 Mb windows identified on GGA1, 2, 4, 7, 12, 15, 18, 19, 21, 27 and 28 were significantly associated with intestine length, and weights or percentages of liver, gizzard or lungs. Within these windows, 14 PCGs were identified based on their biological functions: TNFSF11, GTF2F2, SPERT, KCTD4, HTR2A, RB1, PCDH7, LCORL, LDB2, NR4A2, GPD2, PTPN11, ITGB4 and SLC6A4. From those genes, two were located within haplotype blocks and three overlapped with selection signature regions. A total of 13,748 annotated sequence SNPs were in the 14 PCGs, including 156 SNPs in coding regions (124 synonymous, 26 non-synonymous, and 6 splice variants). Seven deleterious SNPs were identified in TNFSF11, NR4A2 or ITGB4 genes. Conclusions: The results from this study provide novel insights to understand the genetic architecture of internal organ traits in chickens. The QTL detection performed using a high density SNP array covered the whole genome allowing the discovery of novel QTL associated with organ traits. We identified PCGs within the QTL involved in biological processes that may regulate internal organ growth and development. Potential functional genetic variations were identified generating crucial information that, after validation, might be used in poultry breeding programs to reduce the occurrence of metabolic disorders.
650 $aGenomics
650 $aGizzard
650 $aHeart
650 $aIntestines
650 $aLiver
650 $aLungs
650 $aMetabolic diseases
650 $aAvicultura
650 $aGenética Animal
650 $aGenoma
650 $aMelhoramento Genético Animal
653 $aDeleterious mutations
653 $aGenomic heritability
653 $aGWAS
653 $aMetabolic disorders
700 1 $aSALVIAN, M.
700 1 $aBOSCHIERO, C.
700 1 $aCESAR, A. S. M.
700 1 $aREECY, J. M.
700 1 $aGODOY, T. F.
700 1 $aLEDUR, M. C.
700 1 $aGARRICK, D.
700 1 $aMOURÃO, G. B.
700 1 $aCOUTINHO, L. L.
773 $tBMC Genomics$gv. 20, n. 669, 2019.
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Registro original: |
Embrapa Suínos e Aves (CNPSA) |
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| Registros recuperados : 9 | |
| 2. |  | PORTO, B. N.; ALVES, J. D.; MAGALHAES, P. C.; CASTRO, E. M.; CAMPOS, N. A.; SOUZA, K. R. D.; MAGALHAES, M. M.; ANDRADE, C. A.; SANTOS, M. O. Calcium-dependent tolerant responses of cell wall in maize mesocotyl flooding stress. Journal of Agronomy and Crop Science, v. 199, p. 134-143, 2013.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 3. | | BORGHI, E.; BORTOLON, L.; BORTOLON, E. S. O.; ANDRADE, C. A. de O.; FIDELIS, R. R.; CAMARGO, F. P. de; PARIZ, C. M. Forages straw decomposition oversowing on soybean consortium in crop livestock system. In: WORLD CONGRESS ON INTEGRATED CROP-LIVESTOCK-FOREST SYSTEMS; INTERNATIONAL SYMPOSIUM ON INTEGRATED CROP-LIVESTOCK SYSTEMS, 3., 2015, Brasília, DF. Towards sustainable intensification: proceedings. Brasília, DF: Embrapa, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 4. | | FERREIRA JUNIOR, O. J.; BORTOLON, L.; BORGHI, E.; BORTOLON, E. S. O.; CAMARGO, F. P. de; SILVA, R. R. da; LIMA, A. de O.; SOUSA, J. P. de; PADUA, R. P. de; ANDRADE, C. A. O. de. Altura de plantas de soja em função da correção do solo e sobressemeadura de forrageiras na soja. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 32.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 16.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 14.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 11., 2016, Goiânia. Rumo aos novos desafios: [anais]. Viçosa, MG: Sociedade Brasileira de Ciência do Solo, 2016. p. 736. FertBio 2016.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Pesca e Aquicultura. |
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| 5. | | ANDRADE, C. A. O. de; BORGHI, E.; BORTOLON, L.; BORTOLON, E. S. O.; CAMARGO, F. P. de; AVANZI, J. C.; GUARDA, V. D. A.; CUNHA, M. K.; SILVA, R. R. da; FIDELIS, R. R. Forage production and bromatological composition of forage species intercropped with soybean. Journal of Agricultural Science, v. 12, n. 1, p. 84-94, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Pesca e Aquicultura; Embrapa Unidades Centrais. |
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| 6. | | FERREIRA JUNIOR, O. J.; BORTOLON, L.; BORGHI, E.; BORTOLON, E. S. O.; CAMARGO, F. P. de; SILVA, R. R. da; LIMA, A. de O.; SOUSA, J. P. de; PADUA, R. P. de; ANDRADE, C. A. O. de. Produtividade da soja em função da correção do solo e sobressemeadura de forrageiras na soja. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 32.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 16.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 14.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 11., 2016, Goiânia. Rumo aos novos desafios: [anais]. Viçosa, MG: Sociedade Brasileira de Ciência do Solo, 2016. p. 749. FertBio 2016.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Pesca e Aquicultura. |
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| 7. | | ANDRADE, C. A. O. de; BORGHI, E.; BORTOLON, L.; BORTOLON, E. S. O.; CAMARGO, F. P. de; AVANZI, J. C.; SIMON, J.; SILVA, R. R. da; FIDELIS, R. R. Straw production and agronomic performance of soybean intercropped with forage species in no-tillage system. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 52, n. 10, p. 861-868, out. 2017. Título em português: Produção de palha e desempenho agronômico de soja consorciada com espécies forrageiras em sistema plantio direto.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Pesca e Aquicultura; Embrapa Unidades Centrais. |
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| 8. | | CUADRA, S. V.; HEINEMANN, A. B.; SANTOS, P. M.; OLIVEIRA, P. P. A.; KEMENES, A.; GUIMARÃES, L. J. M.; MAGALHÃES, C. A. de S.; CAMARGO, L. S. de A.; ANGELOTTI, F.; PETRERE, V. G.; ANDRADE, C. de L. T. de; PEREIRA, L. G. R.; STEINMETZ, S.; PACKER, A. P. C.; HIGA, R. C. V.; MONTEIRO, J. E. B. de A.; RAMOS, N. P.; SAMPAIO, F. G.; NECHET, K. de L.; ANDRADE, C. A. de; BATISTA, E. R.; PELLEGRINO, G. Q. Resiliência e adaptação da agropecuária às mudanças climáticas. In: CUADRA, S. V.; HEINEMANN, A. B.; BARIONI, L. G.; MOZZER, G. B.; BERGIER, I. (Ed.). Ação contra a mudança global do clima: contribuições da Embrapa. Brasília, DF: Embrapa, 2018. Cap. 3, p. 31-47. E-book. (Objetivos de Desenvolvimento Sustentável, 13).| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Arroz e Feijão; Embrapa Clima Temperado; Embrapa Florestas; Embrapa Meio-Norte; Embrapa Milho e Sorgo; Embrapa Pecuária Sudeste; Embrapa Semiárido. |
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| 9. | | BORGHI, E.; BORTOLON, L.; BORTOLON, E. S. O.; CAMARGO, F. P.; SILVA, R. R. da; AVANZI, J. C.; ANDRADE, C. A. O. de; FIDELIS, R. R.; GUARDA, V. D. A.; SIMON, J.; CAMPOS, L. J. M.; CUNHA, M. K.; LIMA, A. de O.; BARBOSA, R. P. P.; ROCHA, P. H. F.; CONCEIÇÃO, W. S. S. da; FERREIRA JUNIOR, O. J.; SILVA, F. H.; SOUZA, O. R. de; PEREIRA, M. H. M.; SOUZA, J. P. de. Sobressemeadura de capins na soja para sistemas de Integração Lavoura-Pecuária. Palmas: Embrapa Pesca e Aquicultura, 2017. 34 p. (Embrapa Pesca e Aquicultura. Documentos, 34).| Biblioteca(s): Embrapa Milho e Sorgo; Embrapa Pesca e Aquicultura. |
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| Registros recuperados : 9 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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