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 | Acesso ao texto completo restrito à biblioteca da Embrapa Pecuária Sudeste. Para informações adicionais entre em contato com cppse.biblioteca@embrapa.br. |
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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
19/02/2019 |
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Data da última atualização: |
19/02/2019 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
POLETI, M. D.; REGITANO, L. C. de A.; SOUSA, G. H. M. F.; CESAR, A. S. M.; SIMAS, R. C.; SILVA-VIGNATO, B.; OLIVEIRA, G. B.; ANDRADE, S. C. S.; CAMERON, L. C.; COUTINHO, L. L. |
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Afiliação: |
Mirele D. Poleti, USP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE; Gustavo H. M. F. Souza, MS Applications and Development Laboratory Waters Corporation; Aline S. M. Cesar, USP; Rosineide C. Simas, USP; Bárbara Silva-Vignato, USP; Gabriella B. Oliveira, USP; Sónia C. S. Andrade, USP; Luiz C. Cameron, UNIRIO; Luiz Lehmann Coutinho, USP. |
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Título: |
Longissimus dorsi muscle label-free quantitative proteomic reveals biological mechanisms associated with intramuscular fat deposition. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Journal of Proteomics, v. 179, p. 30-41, 2018. |
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DOI: |
https://doi.org/10.1016/j.dib.2018.06.004 |
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Idioma: |
Inglês |
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Conteúdo: |
The pathways involved in intramuscular fat (IMF) deposition in Longissimus dorsi muscle were investigated using an integrated transcriptome-assisted label-free quantitative proteomic approach by High Definition Mass Spectrometry. We quantified 1582 proteins, of which 164 were differentially abundant proteins (DAPs, p < 0.05) between animals with high (H) and low (L) genomic estimated breeding values (GEBV) for IMF content. Ingenuity pathway analysis (IPA) revealed that these DAPs were mainly involved in glycolysis metabolism, actin cytoskeleton signaling, cell-cell adherens junction and pathways for MAPK and insulin. A comparative study between transcriptomic (mRNA) and proteomic data showed 17 differentially expressed genes corresponding to DAPs, of which three genes/proteins did not agree on the direction of the fold change between groups. Moreover, we investigated microRNAs data to explain these differences in fold change direction, being able to unravel two of the three unexpected mRNA/protein relationships. Results demonstrated that changes in protein/mRNA levels of sarcomere organization, intracellular signal transduction and regulation of actin cytoskeleton, are involved in IMF deposition. These findings provide a deeper understanding of the highly complex regulatory mechanisms involved in IMF deposition in cattle and indicate target pathways for future studies. Significance: Intramuscular fat is the amount of fat deposited inside muscle and plays an important role in human health and meat quality attributes, influencing energy metabolism of skeletal muscle, as well as, tenderness, flavor, and juiciness of beef. We performed for the first time the utilization of integrated transcriptome-assisted label-free quantitative proteomic approach using High Definition Mass Spectrometry for characterization of the changes in the proteomic profile of the Longissimus dorsi muscle associated with intramuscular fat deposition in cattle. Furthermore, we compared the muscle proteome with the muscle transcriptome (mRNA and microRNAs), obtained by RNA-sequencing, to better understand the relationship between expression of mRNAs and proteins and to unravel essential biological mechanisms involved in bovine skeletal muscle IMF deposition. MenosThe pathways involved in intramuscular fat (IMF) deposition in Longissimus dorsi muscle were investigated using an integrated transcriptome-assisted label-free quantitative proteomic approach by High Definition Mass Spectrometry. We quantified 1582 proteins, of which 164 were differentially abundant proteins (DAPs, p < 0.05) between animals with high (H) and low (L) genomic estimated breeding values (GEBV) for IMF content. Ingenuity pathway analysis (IPA) revealed that these DAPs were mainly involved in glycolysis metabolism, actin cytoskeleton signaling, cell-cell adherens junction and pathways for MAPK and insulin. A comparative study between transcriptomic (mRNA) and proteomic data showed 17 differentially expressed genes corresponding to DAPs, of which three genes/proteins did not agree on the direction of the fold change between groups. Moreover, we investigated microRNAs data to explain these differences in fold change direction, being able to unravel two of the three unexpected mRNA/protein relationships. Results demonstrated that changes in protein/mRNA levels of sarcomere organization, intracellular signal transduction and regulation of actin cytoskeleton, are involved in IMF deposition. These findings provide a deeper understanding of the highly complex regulatory mechanisms involved in IMF deposition in cattle and indicate target pathways for future studies. Significance: Intramuscular fat is the amount of fat deposited inside muscle and plays an important role in... Mostrar Tudo |
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Palavras-Chave: |
Adiposidade; Gordura intramuscular; MRNA. |
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Thesagro: |
Gordura Animal. |
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Thesaurus Nal: |
Mass spectrometry; MicroRNA. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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Marc: |
LEADER 03231naa a2200313 a 4500
001 2106242
005 2019-02-19
008 2018 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1016/j.dib.2018.06.004$2DOI
100 1 $aPOLETI, M. D.
245 $aLongissimus dorsi muscle label-free quantitative proteomic reveals biological mechanisms associated with intramuscular fat deposition.$h[electronic resource]
260 $c2018
520 $aThe pathways involved in intramuscular fat (IMF) deposition in Longissimus dorsi muscle were investigated using an integrated transcriptome-assisted label-free quantitative proteomic approach by High Definition Mass Spectrometry. We quantified 1582 proteins, of which 164 were differentially abundant proteins (DAPs, p < 0.05) between animals with high (H) and low (L) genomic estimated breeding values (GEBV) for IMF content. Ingenuity pathway analysis (IPA) revealed that these DAPs were mainly involved in glycolysis metabolism, actin cytoskeleton signaling, cell-cell adherens junction and pathways for MAPK and insulin. A comparative study between transcriptomic (mRNA) and proteomic data showed 17 differentially expressed genes corresponding to DAPs, of which three genes/proteins did not agree on the direction of the fold change between groups. Moreover, we investigated microRNAs data to explain these differences in fold change direction, being able to unravel two of the three unexpected mRNA/protein relationships. Results demonstrated that changes in protein/mRNA levels of sarcomere organization, intracellular signal transduction and regulation of actin cytoskeleton, are involved in IMF deposition. These findings provide a deeper understanding of the highly complex regulatory mechanisms involved in IMF deposition in cattle and indicate target pathways for future studies. Significance: Intramuscular fat is the amount of fat deposited inside muscle and plays an important role in human health and meat quality attributes, influencing energy metabolism of skeletal muscle, as well as, tenderness, flavor, and juiciness of beef. We performed for the first time the utilization of integrated transcriptome-assisted label-free quantitative proteomic approach using High Definition Mass Spectrometry for characterization of the changes in the proteomic profile of the Longissimus dorsi muscle associated with intramuscular fat deposition in cattle. Furthermore, we compared the muscle proteome with the muscle transcriptome (mRNA and microRNAs), obtained by RNA-sequencing, to better understand the relationship between expression of mRNAs and proteins and to unravel essential biological mechanisms involved in bovine skeletal muscle IMF deposition.
650 $aMass spectrometry
650 $aMicroRNA
650 $aGordura Animal
653 $aAdiposidade
653 $aGordura intramuscular
653 $aMRNA
700 1 $aREGITANO, L. C. de A.
700 1 $aSOUSA, G. H. M. F.
700 1 $aCESAR, A. S. M.
700 1 $aSIMAS, R. C.
700 1 $aSILVA-VIGNATO, B.
700 1 $aOLIVEIRA, G. B.
700 1 $aANDRADE, S. C. S.
700 1 $aCAMERON, L. C.
700 1 $aCOUTINHO, L. L.
773 $tJournal of Proteomics$gv. 179, p. 30-41, 2018.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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| Registros recuperados : 14 | |
| 8. |  | DIAS, B. F. de O.; SIMÕES-ARAÚJO, J. L.; RUSSO, C. A. M.; MARGIS, R.; ALVES-FERREIRA, M. Unravelling MADS-box gene family in Eucalyptus spp.: A starting point to an understanding of their developmental role in trees. Genetics and Molecular Biology, São Paulo, v. 28, n. 3, Suppl., p. 501-510, 2005.| Biblioteca(s): Embrapa Agrobiologia. |
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| 9. | | DIAS, B. F. S.; GARAY, I.; CAMPAGNOLLA, C.; KAGEYAMA, P.; YOUNES, T.; LEWINSHON, T.; SEUANEZ, H. N.; JOLY FILHO, C.; CERQUEIRA, R.; CAMARA, I.; BARBOSA, F. Avaliação, monitoramento e indicadores da diversidade biológica: perspectivas metodológicas para ecossistemas tropicais. In: GARAY, I.; DIAS, B. F. S. (Org.). Conservação da biodiversidade em ecossistemas tropicais: avanços conceituais e revisão de novas metodologias de avaliação e monitoramento. Petrópolis: Vozes, 2001. p. 412-422.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Meio Ambiente. |
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| 10. | | GHIZONI, P. A. S.; GRAÇA, J. P.; DIAS, B. F.; ABELHA, A.; UEDA, T. E.; SALVADOR, M. C.; OLIVEIRA, M. F.; NUNES, E. O.; HOFFMANN-CAMPO, C. B. Avaliação fenotípica e de metabólitos secundários de genótipos de soja resistentes e suscetíveis à ferrugem asiática. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 10., 2015, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2015. p. 229-238.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 11. | | UEDA, T. E.; GRAÇA, J. P.; SALVADOR, M. C.; GOIS, M. S.; LUSKI, P. G.; DIAS, B. F.; VENTURA, M. U.; OLIVEIRA, M. C. N. de; HOFFMANN-CAMPO, C. B. Aspectos biológicos de Anticarsia gemmatalis (Hübner) (Lepidoptera: Noctuidae) e indução dos compostos fenólicos da soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 11., 2016, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2016. p. 222-230. (Embrapa Soja. Documentos, 373).| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 12. | | DIAS, B. F.; GUIZONI, P. A. S.; TAKEO, J.; BRAGA, P.; SCUPINARI, T.; GAZOLA, D.; UEDA, T. E.; GRAÇA, J. P.; OLIVEIRA, M. C. N.; NUNES, E. O.; HOFFMANN-CAMPO, C. B. Injuries of Helicoverpa armigera and its impact on isoflavones content in soybean genotypes. In: ANNUAL MEETING OF THE INTERNATIONAL SOCIETY OF CHEMICAL ECOLOGY - ISCE, 32.; CONGRESSO OF THE LATIN AMERICAN ASSOCIATION OF CHEMICAL ECOLOGY - ALAEQ, 4.; JOINT MEETING ISCE/ALAEQ, 1., 2016, Iguaçu. Abstracts... Londrina: [s. n.], 2016. p. 130.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 13. | | DIAS, B. F.; GRAÇA, J. P.; GHIZONI, P. A.; UEDA, T. E.; SALVADOR, M. C.; ABELHA, A. C.; OLIVEIRA, M. C. N.; NUNES, E. O.; HOFFMANN-CAMPO, C. B. Desempenho de Helicoverpa armigera em genótipos de soja com diferentes perfis de metabólitos secundários. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 4 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 14. | | FERNANDES, G. W.; ARANTES-GARCIA, L.; BARBOS, M.; BARBOS, N. P. U.; BATISTA, E. K. L.; BEIROZ, W.; RESENDE, F. M.; ABRAHÃO, A.; ALMADA, E. D.; ALVES, E.; ALVES, N. J.; ANGRISANO, P.; ARISTA, M.; ARROYO, J.; ARRUDA, A. J.; BAHIA, T. de O.; BRAGA, L.; BRITO, L.; CALLISTO, M.; CAMINHA-PAIVA, D.; CARVALHO, M.; CONCEIÇÃO, A. A.; COSTA, L. N.; CRUZ, A.; CUNHA-BLUM, J.; DAGEVOS, J.; DIAS, B. F. S.; PINTO, V. D.; DIRZO, R.; DOMINGOS, D. Q.; ECHTERNACHT, L.; FERNANDES, S.; FIGUEIRA, J. E. C.; FIORINI, C. F.; GIULIETTI, A. M.; GOMES, A.; GOMES, V. M.; GONTIJO, B.; GOULART, F.; GUERRA, T. J.; JUNQUEIRA, P. A.; LIMA-SANTOS, D.; MARQUES, J.; MEIRA-NETO, J.; MIOLA, D. T. B.; MORELLATO, L. P. C.; NEGREIROS, D.; NEIRE, E.; NEVES, A. C.; NEVES, F. S.; NOVAIS, S.; OKI, Y.; OLIVEIRA, E.; OLIVEIRA, R. S.; PIVARI, M. O.; PONTES JUNIOR, E.; RANIERI, B. D.; RIBAS, R. P.; SCARIOT, A.; ECHAEFER, C. E.; SENA, L.; SILVA, P. G. da; SIQUEIRA, P. R.; SOARES, N. C.; SOARES-FILHO, B.; SOLAR, R.; TABARELLI, M.; VASCONCELLOS, R.; VILELA, E.; SILVEIRA, F. A. O. Biodiversity and ecosystem services in the Campo Rupestre: a road map for the sustainability of the hottest Brazilian biodiversity hotspot. Perspectives in Ecology and Conservation, v. 18, p. 213-222, 2020| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 14 | |
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