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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
11/12/2018 |
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Data da última atualização: |
11/12/2018 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
VIANA, J. P. G.; SIQUEIRA, M. V. B. M.; ARAUJO, F. L.; GRANDO, C.; SUJII, P. S.; SILVESTRE, E. de A.; NOVELLO, M.; PINHEIRO, J. B.; CAVALLARI, M. M.; BRANCALION, P. H. S.; RODRIGUES, R. R.; SOUZA, A. P. de; CATCHEN, J.; ZUCCHI, M. I. |
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Afiliação: |
João Paulo Gomes Viana, UNICAMP; Marcos Vinicius Bohrer Monteiro Siqueira, Universidade do Sagrado Coração; Fabiano Lucas Araujo, Instituto Agronômico de Campinas; Carolina Grando, UNICAMP; Patricia Sanae Sujii, UNICAMP; Ellida de Aguiar Silvestre, UNICAMP; Mariana Novello, UNICAMP; José Baldin Pinheiro, USP; MARCELO MATTOS CAVALLARI, CPPSE; Pedro H. S. Brancalion, USP; Ricardo Ribeiro Rodrigues, USP; Anete Pereira de Souza, USP; Julian Catchen, University of Illinois; Maria I. Zucchi, Agência Paulista de Tecnologia dos Agronegócios. |
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Título: |
Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw. |
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Ano de publicação: |
2018 |
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Fonte/Imprenta: |
Plos One, v. 13, n. 3, e0192165, p. 1-14, 2018. |
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DOI: |
10.1371/journal.pone.0192165 |
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Idioma: |
Inglês |
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Conteúdo: |
The primary focus of tropical forest restoration has been the recovery of forest structure and tree taxonomic diversity, with limited attention given to genetic conservation. Populations reintroduced through restoration plantings may have low genetic diversity and be genetically structured due to founder effects and genetic drift, which limit the potential of restoration to recover ecologically resilient plant communities. Here, we studied the genetic diversity, genetic structure and differentiation using single nucleotide polymorphisms (SNP) markers between restored and natural populations of the native tree Casearia sylvestris in the Atlantic Forest of Brazil. We sampled leaves from approximately 24 adult individuals in each of the study sites: two restoration plantations (27 and 62 years old) and two forest remnants. We prepared and sequenced a genotyping-by-sequencing library, SNP markers were identified de novo using Stacks pipeline, and genetic parameters and structure analyses were then estimated for populations. The sequencing step was successful for 80 sampled individuals. Neutral genetic diversity was similar among restored and natural populations (AR = 1.72 ± 0.005; HO = 0.135 ± 0.005; HE = 0.167 ± 0.005; FIS = 0.16 ± 0.022), which were not genetically structured by population subdivision. In spite of this absence of genetic structure by population we found genetic structure within populations but even so there is not spatial genetic structure in any population studied. Less than 1% of the neutral alleles were exclusive to a population. In general, contrary to our expectations, restoration plantations were then effective for conserving tree genetic diversity in human-modified tropical landscapes. Furthermore, we demonstrate that genotyping-by-sequencing can be a useful tool in restoration genetics. MenosThe primary focus of tropical forest restoration has been the recovery of forest structure and tree taxonomic diversity, with limited attention given to genetic conservation. Populations reintroduced through restoration plantings may have low genetic diversity and be genetically structured due to founder effects and genetic drift, which limit the potential of restoration to recover ecologically resilient plant communities. Here, we studied the genetic diversity, genetic structure and differentiation using single nucleotide polymorphisms (SNP) markers between restored and natural populations of the native tree Casearia sylvestris in the Atlantic Forest of Brazil. We sampled leaves from approximately 24 adult individuals in each of the study sites: two restoration plantations (27 and 62 years old) and two forest remnants. We prepared and sequenced a genotyping-by-sequencing library, SNP markers were identified de novo using Stacks pipeline, and genetic parameters and structure analyses were then estimated for populations. The sequencing step was successful for 80 sampled individuals. Neutral genetic diversity was similar among restored and natural populations (AR = 1.72 ± 0.005; HO = 0.135 ± 0.005; HE = 0.167 ± 0.005; FIS = 0.16 ± 0.022), which were not genetically structured by population subdivision. In spite of this absence of genetic structure by population we found genetic structure within populations but even so there is not spatial genetic structure in any population st... Mostrar Tudo |
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Palavras-Chave: |
Single nucleotide polymorphisms; SNP. |
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Thesagro: |
Casearia Sylvestris; Floresta Tropical. |
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Thesaurus Nal: |
Tropical forests. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/188147/1/GenomicDiversity.pdf
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Marc: |
LEADER 02904naa a2200349 a 4500
001 2101157
005 2018-12-11
008 2018 bl uuuu u00u1 u #d
024 7 $a10.1371/journal.pone.0192165$2DOI
100 1 $aVIANA, J. P. G.
245 $aGenomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw.$h[electronic resource]
260 $c2018
520 $aThe primary focus of tropical forest restoration has been the recovery of forest structure and tree taxonomic diversity, with limited attention given to genetic conservation. Populations reintroduced through restoration plantings may have low genetic diversity and be genetically structured due to founder effects and genetic drift, which limit the potential of restoration to recover ecologically resilient plant communities. Here, we studied the genetic diversity, genetic structure and differentiation using single nucleotide polymorphisms (SNP) markers between restored and natural populations of the native tree Casearia sylvestris in the Atlantic Forest of Brazil. We sampled leaves from approximately 24 adult individuals in each of the study sites: two restoration plantations (27 and 62 years old) and two forest remnants. We prepared and sequenced a genotyping-by-sequencing library, SNP markers were identified de novo using Stacks pipeline, and genetic parameters and structure analyses were then estimated for populations. The sequencing step was successful for 80 sampled individuals. Neutral genetic diversity was similar among restored and natural populations (AR = 1.72 ± 0.005; HO = 0.135 ± 0.005; HE = 0.167 ± 0.005; FIS = 0.16 ± 0.022), which were not genetically structured by population subdivision. In spite of this absence of genetic structure by population we found genetic structure within populations but even so there is not spatial genetic structure in any population studied. Less than 1% of the neutral alleles were exclusive to a population. In general, contrary to our expectations, restoration plantations were then effective for conserving tree genetic diversity in human-modified tropical landscapes. Furthermore, we demonstrate that genotyping-by-sequencing can be a useful tool in restoration genetics.
650 $aTropical forests
650 $aCasearia Sylvestris
650 $aFloresta Tropical
653 $aSingle nucleotide polymorphisms
653 $aSNP
700 1 $aSIQUEIRA, M. V. B. M.
700 1 $aARAUJO, F. L.
700 1 $aGRANDO, C.
700 1 $aSUJII, P. S.
700 1 $aSILVESTRE, E. de A.
700 1 $aNOVELLO, M.
700 1 $aPINHEIRO, J. B.
700 1 $aCAVALLARI, M. M.
700 1 $aBRANCALION, P. H. S.
700 1 $aRODRIGUES, R. R.
700 1 $aSOUZA, A. P. de
700 1 $aCATCHEN, J.
700 1 $aZUCCHI, M. I.
773 $tPlos One$gv. 13, n. 3, e0192165, p. 1-14, 2018.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Biblioteca |
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| Registros recuperados : 98 | |
| 81. |  | PERSEGUINI, J. M. C. K.; CHIORATTO, A. F.; ZUCCHI, M. I.; COLOMBO, C. A.; CARBONELL, S. A. M.; MONDEGO, J. M. C.; GAZAFFI, R.; GARCIA, A. A. F.; CAMPOS, T. de; SOUZA, A. P. de; RUBIANO, L. B. Genetic diversity in cultivated carioca common beans based on molecular marker analysis. Genetics and Molecular Biology, Ribeirão Preto, v. 34, n. 1, p. 88-102, 2011.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Acre. |
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| 82. | | RIGOTTI, M.; FACANALI, R.; HABER, L. L.; VIEIRA, M. A. R.; ISOBE, M. T. C.; CAVALLARI, M. M.; BAJAY, M. M.; ZUCCHI, M. I.; PINHEIRO, J. B.; MARQUES, M. O. M. Chemical and genetic diversity of Baccharis dracunculifolia DC. (Asteraceae) from the Cerrado biome. Biochemical Systematics and Ecology, v. 111, dec. 2023, 104735. 8 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
|  |
| 83. | | VALDISSER, P. A. M. R.; PEREIRA, W. J.; MORAIS JUNIOR, O. P. de; MENDONÇA, J. A.; SARTORI, D. E. L.; LIMA, LUANN V. V. O.; BORBA, T. C. de O.; BRONDANI, C.; ZUCCHI, M. I.; VIANELLO, R. P. Análise de associação genômica ampla (GWAS) para tolerância à seca em feijoeiro comum. In: CONGRESSO NACIONAL DE PESQUISA DE FEIJÃO, 12., 2017, Piracicaba. Produtividade e sustentabilidade da cultura do feijão: do campo para a mesa: resumos. Piracicaba: CENA: IAC, 2017. p. 67. CONAFE| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 84. | | OLIVEIRA, E. J. de; GARCIA, A. A. F.; MUNHOZ, C. de F.; MARGARIDO, G. R. A.; CONSOLI, L.; MATTA, F. de P.; MORAES, M. C. de; ZUCCHI, M. I.; FUNGARO, M. H. P.; VIEIRA, M. L. C. Integração de mapas genético-moleculares de maracujá-amarelo. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 4., 2007, São Lourenço. São Lourenço:[s.n.], 2007.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 85. | | OLIVEIRA, E. J.; VIEIRA, M. L. C.; GARCIA, A. A. F.; MUNHOZ, C. F.; MARGARIDO, G. R. A.; CONSOLI, L.; MATTA, F. P.; MORAES, M. C.; ZUCCHI, M. I.; FUNGARO, M. H. P. An integrated molecular map yellow passion fruit based on simultaneous maximum-likelihood estimation of linkage and linkage phases. Journal of the American Society Horticultural Science, Mount Vernon, v. 133, n. 1, p. 35-41, jan. 2008. il.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 86. | | TOLEDO-SILVA, G. de; SANTOS-GARCIA, M. O.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Molecular genetic evaluation of the Stylosanthes capitata Vog. and Stylosanthes macrocephala Ferr. et Costa germoplasms. In: INTERNATIONAL SYMPOSIUM ON FORAGE BREEDING, 3., 2011, Bonito, MS. Breeding forage for climate change adaptation and mitigation - eco-efficient animal produtction: proceedings. [Campo Grande, MS: Embrapa Gado de Corte], 2011. 104-107 1 CD-ROM| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 87. | | TOLEDO-SILVA, G. de; SANTOS-GARCIA, M. O.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Molecular genetic evaluation of the Stylosanthes capitata Vog. and Stylosanthes macrocephala Ferr. et Costa germoplasms. In: INTERNATIONAL SYMPOSIUM ON FORAGE BREEDING, 3., 2011, Bonito, MS. Breeding forage for climate change adaptation and mitigation - eco-efficient animal produtction: proceedings. [Campo Grande, MS: Embrapa Gado de Corte], 2011. 104-107 1 CD-ROM| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Cerrados. |
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| 88. | | SANTOS, M. O.; SASSAKI, R. P.; FERREIRA, T. H. S.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; FALEIRO, F. G.; JUNGMANN, L.; ZUCCHI, M. I.; SOUZA, A. P. Polymorphic microsatellite loci for Stylosanthes macrocephala Ferr. et Costa, a tropical forage legume Conservation Genetics Resources, v. 1, p. 481-485, 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Cerrados. |
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| 89. | | SANTOS, M. O.; SASSAKI, R. P.; FERREIRA, T. H. S.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; FALEIRO, F. G.; JUNGMANN, L.; ZUCCHI, M. I.; SOUZA, A. P. Polymorphic microsatellite loci for Stylosanthes macrocephala Ferr. et Costa, a tropical forage legume Conservation Genetics Resources, v.1, p. 481-485, 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 90. | | SANTOS-GARCIA, M. O.; TOLEDO-SILVA, G. de; SASSAKI, R. P.; FERREIRA, T. H.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. de. Using genetic diversity information to establish core collections of Stylosanthes capitata and Stylosanthes macrocephala. Genetics and Molecular Biology, São Paulo, v.35, n.4, p.847-861,Nov. 2012| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 91. | | SANTOS-GARCIA, M. O.; TOLEDO-SILVA, G.; SASSAKI, R. P.; FERREIRA, T. H.; RESENDE, R. M. S.; CHIARI, L.; KARIA, C. T.; CARVALHO, M. A.; FALEIRO, F. G.; ZUCCHI, M. I.; SOUZA, A. P. Using genetic diversity information to establish core collections of Stylosanthes capitata and Stylosanthes macrocephala. Genetics and Molecular Biology, online ahead of print 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Cerrados. |
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| 92. | | JUNGMANN, L.; VIGNA, B. B. Z.; BOLDRINI, K. R.; SOUZA, A. C. B.; VALLE, C. B. do; RESENDE, R. M. S.; PAGLIARINI, M. S.; ZUCCHI, M. I.; SOUZA, A. P. de. A survey of a germplasm collection of Brachiaria humidicola (Rendle) Scweick. using microssatellite markers, cytogenetics, morphological traits and geographical origin. In: INTERNATIONAL SYMPOSIUM ON THE MOLECULAR BREEDING OF FORAGE AND TURF: MBFT, 2010, 6., 2010, Buenos Aires. [Resumos...]. Buenos Aires: Ediciones INTA, 2010. p. 22-23| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Corte. |
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| 93. | | VALDISSER, P. A. M. R.; MÜLLER, B. S. F.; ALMEIDA FILHO, J. E. de; MORAIS JÚNIOR, O. P.; GUIMARÃES, C. M.; BORBA, T. C. O.; SOUZA, I. P. de; ZUCCHI, M. I.; NEVES, L. G.; COELHO, A. S. G.; BRONDANI, C.; VIANELLO, R. P. Genome-wide association studies detect multiple QTLs for productivity in mesoamerican diversity panel of common bean under drought stress. Frontiers in Plant Science, v. 11, 574674, Nov. 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 94. | | SOUZA, L. M. de; LE GUEN, V.; CERQUEIRA-SILVA, C. B. M.; SILVA, C. C.; MANTELLO, C. C.; CONSON, A. R. O.; VIANNA, J. P. G.; ZUCCHI, M. I.; SCALOPPI JUNIOR, E. J.; FIALHO, J. de F.; MORAES, M. L. T. de; GONÇALVES, P. de S.; SOUZA, A. P. de. Genetic diversity strategy for the management and use of rubber genetic resources: more than 1,000 wild and cultivated accessions in a 100-Genotype core collection. Plos One, San Francisco, v. 10, n. 7, e013607, 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Cerrados. |
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| 95. | | VIANA, J. P. G.; SIQUEIRA, M. V. B. M.; ARAUJO, F. L.; GRANDO, C.; SUJII, P. S.; SILVESTRE, E. de A.; NOVELLO, M.; PINHEIRO, J. B.; CAVALLARI, M. M.; BRANCALION, P. H. S.; RODRIGUES, R. R.; SOUZA, A. P. de; CATCHEN, J.; ZUCCHI, M. I. Genomic diversity is similar between Atlantic Forest restorations and natural remnants for the native tree Casearia sylvestris Sw. Plos One, v. 13, n. 3, e0192165, p. 1-14, 2018.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 96. | | VALDISSER, P. A. M. R.; PEREIRA, W. J.; ALMEIDA FILHO, J. E.; MÜLLER, B. S. F.; COELHO, G. R. C.; MENEZES, I. P. P. de; VIANNA, J. P. G.; ZUCCHI, M. I.; LANNA, A. C.; COELHO, A. S. G.; OLIVEIRA, J. P. de; MORAES, A. da C.; BRONDANI, C.; VIANELLO, R. P. In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping. BMC Genomics, v. 18, Article 423, 30 mai. 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 97. | | GARCIA, M.; VIGNA, B. B. Z.; SOUSA, A. C. B.; JUNGMANN, L.; CIDADE, F. W.; TOLEDO-SILVA, G.; FRANCISCO, P. M.; CHIARI, L.; CARVALHO, M. A.; KARIA, C. T.; FALEIRO, F. G.; GODOY, R.; DALL'AGNOL, M.; PAGLIARINI, S. S.; SOUZA, F. H. D. de; SOUZA-CHIES, T. T.; JANK, L.; RESENDE, R. M. S.; VALLE, C. B. do; ZUCCHI, M. I.; SOUZA, A. P. Molecular genetic variability, population structure and mating system in tropical forages. Tropical Grasslands. v. 1, p. 25-30, 2013. 6p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Pecuária Sudeste. |
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| 98. | | GARCIA, M.; VIGNA, B. B. Z.; SOUSA, A. C. B.; JUNGMANN, L.; CIDADE, F. W.; TOLEDO-SILVA, G.; FRANCISCO, P. M.; CHIARI, L.; CARVALHO, M. A.; KARIA, C. T.; FALEIRO, F. G.; GODOY, R.; AGNOLL, M. D.; PAGLIARINI, S. S.; SOUZA, F. H. D. de; SOUZA-CHIES, T. T.; JANK, L.; RESENDE, R. M. S.; VALLE, C. B. do; ZUCCHI, M. I.; SOUZA, A. P. Molecular genetic variability, population structure and mating system in tropical forages. Tropical Grasslands - Forrajes Tropicales - . v. 1, p. 25-30, 2013.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: C - 0 |
| Biblioteca(s): Embrapa Gado de Corte. |
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| Registros recuperados : 98 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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