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Registro Completo |
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Biblioteca(s): |
Embrapa Agropecuária Oeste; Embrapa Soja. |
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Data corrente: |
22/11/2016 |
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Data da última atualização: |
13/12/2016 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. |
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Afiliação: |
ERNESTO ORMEÑO-ORRILLO, Universidad Nacional Agraria La Molina; DOUGLAS FABIANO GOMES, CAPES; PABLO DEL CERRO, Universidad de Sevilla; ANA TEREZA RIBEIRO VASCONCELOS, LNCC; CARLOS CANCHAYA, University of Vigo; LUIZ GONZAGA PAULA ALMEIDA, LNCC; FABIO MARTINS MERCANTE, CPAO; FRANCISCO JAVIER OLLERO, Universidad de Sevilla; MANUEL MEGÍAS, Universidad de Sevilla; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
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Título: |
Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
BMC Genomics, v. 17, n. 534, 2016. |
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DOI: |
10.1186/s12864-016-2859-z |
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Idioma: |
Português |
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Conteúdo: |
Common bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different.
A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis. MenosCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar t... Mostrar Tudo |
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Palavras-Chave: |
Fixação biológica de nitrogênio. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/150393/1/2016OrmenoOrrilloetalBMCGenomics.pdf
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Marc: |
LEADER 03133naa a2200253 a 4500
001 2058569
005 2016-12-13
008 2016 bl uuuu u00u1 u #d
024 7 $a10.1186/s12864-016-2859-z$2DOI
100 1 $aORMEÑO-ORRILLO, E.
245 $aGenome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8$bsearching for genes related to a successful symbiotic performance under stressful conditions.$h[electronic resource]
260 $c2016
520 $aCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different. A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis.
653 $aFixação biológica de nitrogênio
700 1 $aGOMES, D. F.
700 1 $aCERRO, P. del
700 1 $aVASCONCELOS, A. T. R.
700 1 $aCANCHAYA, C.
700 1 $aALMEIDA, L. G. P.
700 1 $aMERCANTE, F. M.
700 1 $aJAVIER OLLERO, F.
700 1 $aMEGÍAS, M.
700 1 $aHUNGRIA, M.
773 $tBMC Genomics$gv. 17, n. 534, 2016.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Agropecuária Oeste (CPAO) |
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| Registros recuperados : 45 | |
| 21. |  | GODOY, L. P.; CHUEIRE, L. M. de O.; BARCELLOS, F. G.; VASCONCELOS, A. T. R.; GONZAGA, L. de P.; NÍCOLAS, M. F.; SOUZA, R. C.; HUNGRIA, M. Panorama genômico da estirpe SEMIA 5079 (=CPAC 15) de Bradyrhizobium japonicum, recomendada para inoculantes comerciais na cultura da soja. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 27.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 11.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 9.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 6., 2006, Bonito, MS. A busca das raízes: anais. Dourados: Embrapa Agropecuária Oeste, 2006. 1 CD-ROM. (Embrapa Agropecuária Oeste. Documentos, 82).| Biblioteca(s): Embrapa Soja. |
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| 22. | | PINTO, F. G. da S.; CHUEIRE, L. M. de O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; GONZAGA, L.; ANDRE, E.; HUNGRIA, M. Panorama genômico de Rhizobium tropici estirpe PRF 81 (Semia 4080). In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2005, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2005. p. 50-55. (Embrapa Soja. Documentos, 268).| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 24. | | SOUZA, R. C.; MENDES, I. C.; REIS-JUNIOR, F. B.; CARVALHO, F. M.; NOGUEIRA, M. A.; VASCONCELOS, A. T. R.; VICENTE, V. A.; HUNGRIA, M. Shifts in taxonomic and functional microbial diversity with agriculture: How fragile is the Brazilian Cerrado? BMC Microbiology, [S. l.], v. 16, n. 42, 2016. 15 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Cerrados; Embrapa Soja. |
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| 25. | | PINTO, F. G. da S.; CHUEIRE, L. M. de O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; SOUZA, L. G. R. C.; HUNGRIA, M. Sequênciamento genômico e bioprospecção de genes de Rhizobium tropici estirpe PRF 81 (SEMIA 4080) utilizada em inoculantes comerciais para a cultura do feijoeiro. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2., 2006, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2006. p. 116-121. (Embrapa Soja. Documentos, 276).| Biblioteca(s): Embrapa Soja. |
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| 26. | | BELLINI, R. G.; CORONADO, M. A.; PASCHOAL, A. R.; REGO, T. G. do; HUNGRIA, M.; VASCONCELOS, A. T. R. de; NICOLAS, M. F. Structural analysis of a novel N-carbamoyl-D-amino acid amidohydrolase from a Brazilian Bradyrhizobium japonicum strain: In silico insights by molecular modelling, docking and molecular dynamics. Journal of Molecular Graphics & Modelling, v. 86, p. 35-42, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 27. | | SOUZA, R. C.; CANTÃO, M. E.; NOGUEIRA, M. A.; VASCONCELOS, A. T. R.; GOMES, R. R.; VICENTE, V. A.; HUNGRIA, M. Triagem de hidrolases por metagenômica de solos agrícolas do Norte do Paraná. In: ENCONTRO NACIONAL DE MICROBIOLOGIA AMBIENTAL, 14., João Pessoa, 2014. Anais...| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 28. | | BINDE, D. R.; HUNGRIA, M.; CHUEIRE, L. M. de O.; LUCAS, I. H.; NICOLÁS, M. F.; VASCONCELOS, A. T. R.; GONZAGA, L. de P.; MARTINEZ-ROMERO, E.; BARCELLOS, F. G.; SILVA, M. F. da. Análise estrutural do plasmídio simbiótico de Rhizobium tropici CFN299. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2., 2006, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2006. p. 102-105. (Embrapa Soja. Documentos, 276).| Biblioteca(s): Embrapa Soja. |
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| 29. | | ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. BMC Genomics, v. 17, n. 534, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Soja. |
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| 30. | | ZULETA, L. F. G.; CUNHA, C. de O.; CARVALHO, F. M. de; CIAPINA, L. P.; SOUZA, R. C; MERCANTE, F. M.; FARIA, S. M. de; BALDANI, J. I.; STRALIOTTO, R.; HUNGRIA, M.; VASCONCELOS, A. T. R. de. The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. BMC Genomics, v.15, p. 535, Jun. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Soja. |
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| 31. | | ZULETA, L. F. G.; CUNHA, C. de O.; CARVALHO, F. M. de; CIAPINA, L. P.; SOUZA, R. C; MERCANTE, F. M.; FARIA, S. M. de; BALDANI, J. I.; STRALIOTTO, R.; HUNGRIA, M.; VASCONCELOS, A. T. R. de. The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes. BMC Genomics, v.15, n. 1, p. 535, Jun. 2014. The complete genome of Burkholderia phenoliruptrix strain BR3459a, a symbiont of Mimosa flocculosa: highlighting the coexistence of symbiotic and pathogenic genes| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 32. | | SIQUEIRA, A. F.; ORMEÑO-ORRILLO, E.; SOUZA, R. C.; RODRIGUES, E. P.; ALMEIDA, L. G. P.; BARCELLOS, F. G.; BATISTA, J. S. S.; NAKATANI, A. S.; MARTÍNEZ-ROMERO, E.; VASCONCELOS, A. T. R.; HUNGRIA, M. Comparative genomics of Bradyrhizobium japonicum CPAC 15 and Bradyrhizobium diazoefficiens CPAC 7: elite model strains for understanding symbiotic performance with soybean. BMC Genomics, v. 15, n. 420, June 2014. 20 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 33. | | PINTO, F. G. S.; CHUEIRE, L. M. O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; ALMEIDA, L. G. P.; SOUZA, R. C.; MENNA, P.; BARCELLOS, F. G.; MEGÍAS, M.; HUNGRIA, M. Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81. Functional & Integrative Genomics, Heidelberg, v. 9, n. 2, p. 263-270, May 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 34. | | HUNGRIA, M.; ASTOLFI FILHO, S.; CHUEIRE, L. M. de O.; NICOLÁS, M. F.; SANTOS, E. B. P.; BULBOL, M. R.; SOUZA FILHO, A.; NOGUEIRA ASSUNÇÃO, E.; GERMANO, M. G.; VASCONCELOS, A. T. R. Genetic characterization of Chromobacterium isolates from black water environments in the Brazilian Amazon. Letters in Applied Microbiology, Oxford, v. 41, n. 1, p. 17-23, July 2005.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - B |
| Biblioteca(s): Embrapa Soja. |
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| 35. | | LOBO, F. P.; GONÇALVES, D. L.; ALVES JÚNIOR, S. L.; GERBER, A. L.; VASCONCELOS, A. T. R. de; BASSO, L. C.; FRANCO, G. R.; SOARES, M. A.; CADETE, R. M.; ROSA, C. A.; STAMBUK, B. U. Draft genome sequence of the D-xylose-fermenting yeast Spathaspora arborariae UFMG-HM19.1AT. Genome Announcements, Washington DC, v. 2, n. 1, p. 1-2, Jan./Feb. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: C - 0 |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 36. | | BINDE, D. R.; CHUEIRE, L. M. de O.; LUCAS, I. H.; NICOLÁS, M. F.; VASCONCELOS, A. T. R.; GONZAGA, L. de P.; MARTINEZ-ROMERO, E.; BARCELLOS, F. G.; SILVA, M. F. da; GARCIA, J. E.; HUNGRIA, M. Sequenciamento do plasmídeo simbiótico da estirpe CFN 299 de Rhizobium tropici. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2005, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2005. p. 29-34. (Embrapa Soja. Documentos, 268).| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 37. | | BINDE, D. R.; CHUEIRE, L. M. O.; LUCASI. H.; NICOLÁS, M. F.; VASCONCELOS, A. T. R.; GONZAGA, L. P.; SOUZA, R. C.; MARTINEZ-ROMERO, E.; FERNANDO GOMES BARCELLOS, F. G.; SILVA, M. F.; GARCIA, J. E.; HUNGRIA, H. Seqüenciamento do plasmídeo simbiótico da estirpe CFN 299 de Rhizobium tropici. In: SEMANA DE BIOTECNOLOGIA, 1., 2005, Londrina. [Resumos]. Londrina: UEL, 2005. 1 CD-ROM. Resumo - Pdf. 41.| Biblioteca(s): Embrapa Soja. |
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| 38. | | ARGE, L. W. P.; MORAIS, G. L.; CARVALHO, J. B.; ZOCOLO, G. J.; OSTER, A. H.; VASCONCELOS, A. T. R. de; DINIZ, L. E. C.; SILVA, E. de O.; BORDALLO, P. do N. Uncovering the transcriptional molecular dynamics of shelf life extension and lignin-based resistance induction to Fusarium pallidoroseum in melon fruit by the use of pulsed-light. Postharvest Biology and Technology, v. 216, n. 113036, 2024. Primeiro autor - Embrapa Soja| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja; Embrapa Uva e Vinho. |
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| 39. | | PACCHION, R. G.; CARVALHO, F. M.; THOMPSON, C. E.; FAUSTINO, A. L. F.; NICOLINI, F.; PEREIRA, T. S.; SILVA, R. C. B.; CANTAO, M. E.; GERBER, A.; VASCONCELOS, A. T. R.; AGNEZ-LIMA, L. F. Taxonomic and functional profiles of soil samples from Atlantic Forest and caatinga biomes in northeastern Brazil MicrobiologyOpen, Brussels, v. 3, n. 3, p. 299-315, 2014. DOI: 10.1002/mbo3.169.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Suínos e Aves. |
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| 40. | | ORMEÑO-ORRILLO, E.; MENNA, P.; ALMEIDA, L. G. P.; JAVIER OLLERO, F.; NICOLÁS, M. F.; RODRIGUES, E. P.; NAKATANI, A. S.; BATISTA, J. S. S.; CHUEIRE, L. M. de O.; SOUZA, R. C.; VASCONCELOS, A. T. R.; MEGÍAS, M.; HUNGRIA, M.; MARTÍNEZ-ROMERO, E. Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). BMC Genomics, v. 13, n. 735, 2012. 26 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 45 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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