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Registro Completo |
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Biblioteca(s): |
Embrapa Meio Ambiente. |
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Data corrente: |
02/12/2011 |
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Data da última atualização: |
02/12/2011 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
DIAS, A. C. F.; DINI-ANDREOTE, F.; TAKETANI, R. G.; TSAI, S. M.; AZEVEDO, J. L.; MELO, I. S. de; ANDREOTE, F. D. |
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Afiliação: |
ARMANDO CAVALCANTE FRANCO DIAS, CENA-USP; FRANCISCO DINI-ANDREOTE, ESALQ-USP; RODIRGO GOUVÊA TAKETANI, CENA-USP; SIU MUI TSAI, CENA-USP; JOÃO LÚCIO AZEVEDO, CENA-USP; ITAMAR SOARES DE MELO, CNPMA; FERNANDO DINI ANDREOTE, ESALQ-USP. |
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Título: |
Archaeal communities in the sediments of three contrasting mangroves. |
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Ano de publicação: |
2011 |
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Fonte/Imprenta: |
Journal of Soils and Sediments, Berlin, v. 11, n. 8, p. 1466-1476, 2011. |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves. Conclusions The findings are that the mangroves act as a reservoir for archaeal diversity, are possibly involved in nitrogen transformation in this ecosystem, and are affected by distinct pressures caused by anthropogenic activities. MenosAbstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves... Mostrar Tudo |
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Palavras-Chave: |
16S rRNA; Ammonium processing; amoA; Thaumarchaeota. |
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Thesagro: |
Mangue; Microrganismo; Sedimento. |
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Thesaurus Nal: |
Archaea; Euryarchaeota; Mangrove swamps. |
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Categoria do assunto: |
S Ciências Biológicas |
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Marc: |
LEADER 02590naa a2200313 a 4500
001 1908298
005 2011-12-02
008 2011 bl uuuu u00u1 u #d
100 1 $aDIAS, A. C. F.
245 $aArchaeal communities in the sediments of three contrasting mangroves.$h[electronic resource]
260 $c2011
520 $aAbstract: This study evaluates the presence and diversity of 16S rRNA (rrs) and amoA genes from archaea in three mangrove sediments under different stages of preservation(one pristine mangrove, one affected by anthropogenic activity, and another contaminated by an oil spill) in the state of São Paulo (Brazil). Materials and methods A combination of DGGE, coupled with ordination analysis, and clone libraries of both targeted genes (rrs and amoA) was used to infer the diversity and phylogeny of archaeal communities in the mangrove analyzed samples. Results and discussion The DGGE combined with multivariate analysis revealed, based on the ribosomal gene, differences in archaeal communities according to environmental parameters such as mangrove location, anthropogenic activity, and oil contamination. The profiles based on the amoA gene were more similar than those obtained for the gene rrs, with the only difference statistically observed for the community found in the mangrove under anthropogenic pressure. Furthermore, phylogenetic analysis revealed most archaeal groups affiliated to sequences belonging to the Thaumarchaeota (53.1%, 24 OTUs) and Euryarchaeota (29.6%, 14 OTUs) phyla, in addition to 14 sequences affiliated to an unclassified Archaea (16.1%, 8 OTUs). Concerning the analysis of the amoA gene, mangroves harbored sequences affiliated with those previously described in water column and soil/sediment samples, besides two possible clusters specifically found in mangroves. Conclusions The findings are that the mangroves act as a reservoir for archaeal diversity, are possibly involved in nitrogen transformation in this ecosystem, and are affected by distinct pressures caused by anthropogenic activities.
650 $aArchaea
650 $aEuryarchaeota
650 $aMangrove swamps
650 $aMangue
650 $aMicrorganismo
650 $aSedimento
653 $a16S rRNA
653 $aAmmonium processing
653 $aamoA
653 $aThaumarchaeota
700 1 $aDINI-ANDREOTE, F.
700 1 $aTAKETANI, R. G.
700 1 $aTSAI, S. M.
700 1 $aAZEVEDO, J. L.
700 1 $aMELO, I. S. de
700 1 $aANDREOTE, F. D.
773 $tJournal of Soils and Sediments, Berlin$gv. 11, n. 8, p. 1466-1476, 2011.
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Embrapa Meio Ambiente (CNPMA) |
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| Registros recuperados : 98 | |
| 81. |  | SOUZA, A. A. de; BURITY, H. A.; FIGUEIREDO, M. do V. B.; SILVA, M. L. R. B. da; MELOTTO, M.; TSAI, S. M. Eficiência simbiótica de estirpes HUP+, HUPhr e HUP. de Bradyrhizobium japonicum eBbradyrhizobium elkanii em cultivares de caupi. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 34, n. 10, p. 1925-31, out. 1999 Título em inglês: Symbiotic efficiency of Hup+, Huphr and Hup- Bradyrhizobium japonicum and Bradyrhizobium elkanii strains in cowpea cultivars.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 82. | | ETCHEGARAY, A.; BUENO, C. de C.; MELO, I. S. de; TSAI, S. M.; FIORE, M. F.; SILVA-STENICO, M. E.; MORAES, L. A. B. de; TESCHKE, O. Effect of a highly concentrated lipopeptide extract of Bacillus subtilis on fungal and bacterial cells. Archives of Microbiology, v. 190, n. 6, p.611-622, 2008.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: Internacional - A |
| Biblioteca(s): Embrapa Meio Ambiente. |
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| 83. | | LIMA, A. B.; CANNAVAN, F. de S.; GERMANO, M. G.; DINI-ANDREOTE, F.; FRANCHINI, J. C.; PAULA, A. M. de; TEIXEIRA, W. G.; TSAI, S. M. Effects of vegetation and seasonality on bacterial communities in Amazonian dark earth and adjacent soils. African Journal of Microbiology Research, v. 9, n. 40, p. 2119-2134, Oct. 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Solos. |
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| 84. | | GERMANO, M. G.; CANNAVAN, F. S.; MENDES, L. W.; LIMA, A. B.; TEIXEIRA, W. G.; PELLIZARI, V. H.; TSAI, S. M. Functional diversity of bacterial genes associated with aromatic hydrocarbon degradation in anthropogenic dark earth of Amazonia. Pesquisa Agropecuária Brasileira, v. 47, n. 5, p. 654-664, maio 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Solos. |
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| 85. | | SILVA, M. G. G.; CANNAVAN, F. S.; MENDES, L. W.; LIMA, A. B.; TEIXEIRA, W. G.; PELLIZARI, V. H.; TSAI, S. M. Functional diversity of bacterial genes associated with aromatic hydrocarbon degradation in anthropogenic dark earth of Amazonia. Pesquisa Agropecuária Brasileira, Brasília, DF, v. 47, n. 5, p. 654-664, maio 2012 Título em português: Diversidade funcional de genes bacterianos associados à degradação de hidrocarbonetos aromáticos em solos de terra preta de índio.| Biblioteca(s): Embrapa Unidades Centrais. |
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| 86. | | NAVARRETE, A. A.; DINIZ, T. R.; BRAGA, L. P. P.; SILVA, G. G. Z.; FRANCHINI, J. C.; ROSSETTO, R.; EDWARDS, R. A.; TSAI, S. M. Multi-Analytical approach reveals potential microbial indicators in soil for sugarcane model systems. Plos One, [S. l.], Jun. 2015. 19 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 87. | | TOMAZELLI, D.; KLAUBERG-FILHO, O.; MENDES, S. D. C.; BALDISSERA, T. C.; GARAGORRY, F. C.; TSAI, S. M.; PINTO, C. E.; MENDES, L. W.; GOSS-SOUZA, D. Pasture management intensification shifts the soil microbiome composition and ecosystem functions. Agriculture, Ecosystems and Environment, v. 346, 108355, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Pecuária Sul. |
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| 88. | | CAMPOS, F. C.; ABDALLA FILHO, A. L.; CORRÊA, P. S.; NAZATO, C.; MONNERAT, R. G.; MCMANUS, C. M.; TSAI, S. M.; ABDALLA, A. L.; LOUVANDINI, H. Rumen degradability and gas production as influenced by different strains of Bacillus thuringiensis. Canadian Journal of Animal Science, v. 99, n. 4, p. 951-954, 2019.| Tipo: Nota Técnica/Nota Científica |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| 89. | | KLAUBERG FILHO, O.; TSAI, S. M.; BROWN, G. G.; BARTZ, M.; LUIZ MAFRA, A. L.; DECAËNS, T.; SOUSA, J. P.; BARETTA, C. M.; STÜRMER, S. L.; BARETTA, D. Soil quality and biodiversity across a land-use intensification gradient in Santa Catarina, Brazil. In: INTERNATIONAL COLLOQUIUM ON SOIL ZOOLOGY, 16., 2012, Coimbra. Book of abstracts. Coimbra: University of Coimbra, 2012. p. 76.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Florestas. |
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| 90. | | RODRIGUES, J. L. M.; PELLIZARI, V. H.; MUELLER, R.; BAEK, K.; JESUS, E. da C.; PAULA, F. S.; MIRZA, B.; HAMAOUI, G. S.; TSAI, S. M.; FEIGL, B.; TIEDJE, J. M.; BOHANNAN, B. J. M.; NUSSLEIN, K. Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities. Proceedings of the National Academy of Sciences Online, 27. dec. 2012| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agrobiologia. |
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| 91. | | ROMAGNOLI, E. M; LOPES, L. D.; SILVA, L. R. F, da; NAKAMURA, F. M; SBARDELLA, M.; PEREIRA, R.; SILVA, W. D.; TSAI, S. M.; ANDREOTE, F. D.; MENDES, R. Quantification of Archaea and bacteria domains in the sheep rumen incubated under two diet conditions. The International Sodety for Microblal EcoJogy(ISME), organlzer of the 14th International SympoSium on Microblal Eco!ogy (ISME14 )in Copenhagen, Denmark, from 19 - 24 August 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio Ambiente. |
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| 92. | | MADARI, B. E.; SILVA, M. A. S.; CARVALHO, M. T. M.; MAIA, A. H. N.; PETTER, F. A.; SANTOS, J. L. S.; TSAI, S. M.; LEAL, W. G. de O.; ZEVIANI, W. M. Properties of a sandy clay loam Haplic Ferralsol and soybean grain yield in a five-year field trial as affected by biochar amendment. Geoderma, v. 305, p. 100-112, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Meio Ambiente. |
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| 93. | | HARDARSON, G.; BLISS, F. A.; CIGALES-RIVERO, M.R.; HENSON, R. A.; KIPE-NOLT, J.; LONGERI, L.; MANRIQUE, A.; PENA-CABRIALES, J.J.; PEREIRA, P. A. A.; SANABRIA, C. A.; TSAI, S. M. Genotypic variation in biological nitrogen fixation by common bean. Plant and Soil, v. 152, n. 1, p. 59-70, Mar. 1993.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Arroz e Feijão. |
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| 94. | | PELLEGRINETTI, T. A.; SILVA, A. V. R. DA; CUNHA, I. C. M.; BOLETA, E. M.; ROCHA, G. S.; MAFRA, T. M. L.; MENDES, R.; TSAI, S. M.; MENDES, L. W. From susceptibility to resilience: uncovering the rhizosphere microbial contributions to drought tolerance in common bean. In: PLANT MICROBIOME SYMPOSIUM, 4., 2023, Quito. Abstracts... Quito, Equador: Universidad San Francisco de Quito, 2023. Ref. P-11. 1 p.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio Ambiente. |
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| 95. | | FREITAS, A. S. de; ZAGATTO, L. F. G.; ROCHA, G. S.; PELLEGRINETTI, T. A.; ALVES, L. de C. M.; LARA, V. M. de; MANDRO, J. A.; MARTINS, G. L.; MUNIZ, A. W.; HANADA, R. E.; ROESCH, L. F. W.; TSAI, S. M. Bacterial genomes recovered from litter’s metagenomes in Amazonian Dark Earths. Microbiology Resource Announcements, 2024. Online first.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 3 |
| Biblioteca(s): Embrapa Amazônia Ocidental. |
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| 96. | | BIELUCZYK, W.; ASSELTA, F. O.; NAVROSKI, D.; GONTIJO, J. B.; VENTURINI, A. M.; MENDES, L. W.; SIMON, C. P.; CAMARGO, P. B. de; TADINI, A. M.; MARTIN NETO, L.; BENDASSOLLI, J. A.; RODRIGUES, R. R.; van der PUTTEN, H. W.; TSAI, S. M. Linking above and belowground carbon sequestration, soil organic matter properties, and soil health in Brazilian Atlantic Forest restoration. Journal of Environmental Management, v. 344, 118573, 2023. 15 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Instrumentação. |
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| 97. | | PYLRO, V. S.; ROESCH, L. F. W.; ORTEGA, J. M.; AMARAL, A. M. do; TÓTOLA, M. R.; HIRSCH, P. R.; ROSADO, A. S.; GÓES-NETO, A.; SILVA, A. L. da C.; ROSA, C. A.; MORAIS, D. K.; ANDREOTE, F. D.; DUARTE, G. F.; MELO, I. S. de; SELDIN, L.; LAMBAIS, M. R.; HUNGRIA, M.; PEIXOTO, R. S.; KRUGER, R. H.; TSAI, S. M.; AZEVEDO, V. Brazilian microbiome project: revealing the unexplored microbial diversity - challenges and prospects. Microbial Ecology, New York, v. 67, n. 2, p. 237-241, Oct. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Meio Ambiente; Embrapa Soja. |
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| 98. | | VIEIRA, L. G. E.; ANDRADE, A. C.; COLOMBO, C. A.; MORAES, A. H. de A.; METHA, A.; OLIVEIRA, A. C. de; LABATE, C. A.; MARINO, C. L.; MONTEIRO-VITORELLO, C. de B.; MONTE, D. C.; GIGLIOTI, E.; KIMURA, E. T.; ROMANO, E.; KURAMAE, E. E.; LEMOS, E. G. M.; ALMEIDA, E. R. P. de; JORGE, E. C.; ALBUQUERQUE, E. V. S.; SILVA, F. R. da; VINECKY, F.; SAWAZAKI, H. E.; DORRY, H. F. A.; CARRER, H.; ABREU, I. N.; BATISTA, J. A. N.; TEIXEIRA, J. B.; KITAJIMA, J. P.; XAVIER, K. G.; LIMA, L. M. de; CAMARGO, L. E. A. de; PEREIRA, L. F. P.; COUTINHO, L. L.; LEMOS, M. V. F.; ROMANO, M. R.; MACHADO, M. A.; COSTA, M. M. do C.; SÁ, M. F. G. de; GOLDMAN, M. H. S.; FERRO, M. I. T.; TINOCO, M. L. P.; OLIVEIRA, M. C.; VAN SLUYS, M-A.; SHIMIZU, M. M.; MALUF, M. P.; EIRA, M. T. S. da; GUERREIRO FILHO, O.; ARRUDA, P.; MAZZAFERA, P.; MARIANI, P. D. S. C.; OLIVEIRA, R. L. B. C. de; HARAKAVA, R.; BALBAO, S. F.; TSAI, S. M.; MAURO, S. M. Z. di; SANTOS, S. N.; SIQUEIRA, W. J.; COSTA, G. G. L.; FORMIGHIERI, E. F.; CARAZZOLLE, M. F.; PEREIRA, G. A. G. Brazilian coffee genome project: an EST-based genomic resource. Brazilian Journal of Plant Physiology, v. 18, n. 1, p. 95-108, 2006.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: -- - A |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 98 | |
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