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Registro Completo |
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Biblioteca(s): |
Embrapa Pecuária Sul. |
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Data corrente: |
10/05/2011 |
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Data da última atualização: |
04/08/2011 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
STEIBEL, J. P.; BATES, R. O.; ROSA, G. J. M.; TEMPELMAN, R. J.; RILINGTON, V. D.; RAGAVENDRAN, A.; RANEY, NANCY E.; RAMOS, A. M.; CARDOSO, F. F.; EDWARDS, D. B.; ERNST, C. W. |
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Afiliação: |
JUAN PEDRO STEIBEL, Department of Animal Science, Michigan State University; RONALD O. BATES, Department of Animal Science, Michigan State University; GUILHERME J. M. ROSA, Department of Animal Sciences, University of Wisconsin; ROBERT J. TEMPELMAN, Department of Animal Science, Michigan State University; VALENCIA D. RILINGTON, Department of Animal Science, Michigan State University; ASHOK RAGAVENDRAN, Department of Animal Science, Michigan State University; NANCY E. RANEY, Department of Animal Science, Michigan State University; ANTONIO MARCOS RAMOS, Department of Animal Science, Michigan State University; FERNANDO FLORES CARDOSO, CPPSUL; DAVID B. EDWARDS, Department of Animal Science, Michigan State University; ERNST, C. W., Department of Animal Science, Michigan State University. |
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Título: |
Genome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs. |
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Ano de publicação: |
2011 |
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Fonte/Imprenta: |
PLoS ONE, San Francisco, v. 6, n. 2, e16766, Feb. 2011. |
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Idioma: |
Inglês |
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Conteúdo: |
Background: Nearly 6,000 QTL have been reported for 588 different traits in pigs, more than in any other livestock species. However, this effort has translated into only a few confirmed causative variants. A powerful strategy for revealing candidate genes involves expression QTL (eQTL) mapping, where the mRNA abundance of a set of transcripts is used as the response variable for a QTL scan. Methodology/Principal Findings: We utilized a whole genome expression microarray and an F2 pig resource population to conduct a global eQTL analysis in loin muscle tissue, and compared results to previously inferred phenotypic QTL (pQTL) from the same experimental cross. We found 62 unique eQTL (FDR ,10%) and identified 3 gene networks enriched with genes subject to genetic control involved in lipid metabolism, DNA replication, and cell cycle regulation. We observed strong evidence of local regulation (40 out of 59 eQTL with known genomic position) and compared these eQTL to pQTL to help identify potential candidate genes. Among the interesting associations, we found aldo-keto reductase 7A2 (AKR7A2) and thioredoxin domain containing 12 (TXNDC12) eQTL that are part of a network associated with lipid metabolism and in turn overlap with pQTL regions for marbling, % intramuscular fat (% fat) and loin muscle area on Sus scrofa (SSC) chromosome 6. Additionally, we report 13 genomic regions with overlapping eQTL and pQTL involving 14 local eQTL. Conclusions/Significance: Results of this analysis provide novel candidate genes for important complex pig phenotypes. MenosBackground: Nearly 6,000 QTL have been reported for 588 different traits in pigs, more than in any other livestock species. However, this effort has translated into only a few confirmed causative variants. A powerful strategy for revealing candidate genes involves expression QTL (eQTL) mapping, where the mRNA abundance of a set of transcripts is used as the response variable for a QTL scan. Methodology/Principal Findings: We utilized a whole genome expression microarray and an F2 pig resource population to conduct a global eQTL analysis in loin muscle tissue, and compared results to previously inferred phenotypic QTL (pQTL) from the same experimental cross. We found 62 unique eQTL (FDR ,10%) and identified 3 gene networks enriched with genes subject to genetic control involved in lipid metabolism, DNA replication, and cell cycle regulation. We observed strong evidence of local regulation (40 out of 59 eQTL with known genomic position) and compared these eQTL to pQTL to help identify potential candidate genes. Among the interesting associations, we found aldo-keto reductase 7A2 (AKR7A2) and thioredoxin domain containing 12 (TXNDC12) eQTL that are part of a network associated with lipid metabolism and in turn overlap with pQTL regions for marbling, % intramuscular fat (% fat) and loin muscle area on Sus scrofa (SSC) chromosome 6. Additionally, we report 13 genomic regions with overlapping eQTL and pQTL involving 14 local eQTL. Conclusions/Significance: Results of this analysis... Mostrar Tudo |
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Thesagro: |
Genética; Suíno. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/33973/1/METAS-2011-FFC-Steibel-et-al-2011-PLoS-ONE-62-e16766.pdf
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Marc: |
LEADER 02341naa a2200265 a 4500
001 1888216
005 2011-08-04
008 2011 bl uuuu u00u1 u #d
100 1 $aSTEIBEL, J. P.
245 $aGenome-wide linkage analysis of global gene expression in loin muscle tissue identifies candidate genes in pigs.$h[electronic resource]
260 $c2011
520 $aBackground: Nearly 6,000 QTL have been reported for 588 different traits in pigs, more than in any other livestock species. However, this effort has translated into only a few confirmed causative variants. A powerful strategy for revealing candidate genes involves expression QTL (eQTL) mapping, where the mRNA abundance of a set of transcripts is used as the response variable for a QTL scan. Methodology/Principal Findings: We utilized a whole genome expression microarray and an F2 pig resource population to conduct a global eQTL analysis in loin muscle tissue, and compared results to previously inferred phenotypic QTL (pQTL) from the same experimental cross. We found 62 unique eQTL (FDR ,10%) and identified 3 gene networks enriched with genes subject to genetic control involved in lipid metabolism, DNA replication, and cell cycle regulation. We observed strong evidence of local regulation (40 out of 59 eQTL with known genomic position) and compared these eQTL to pQTL to help identify potential candidate genes. Among the interesting associations, we found aldo-keto reductase 7A2 (AKR7A2) and thioredoxin domain containing 12 (TXNDC12) eQTL that are part of a network associated with lipid metabolism and in turn overlap with pQTL regions for marbling, % intramuscular fat (% fat) and loin muscle area on Sus scrofa (SSC) chromosome 6. Additionally, we report 13 genomic regions with overlapping eQTL and pQTL involving 14 local eQTL. Conclusions/Significance: Results of this analysis provide novel candidate genes for important complex pig phenotypes.
650 $aGenética
650 $aSuíno
700 1 $aBATES, R. O.
700 1 $aROSA, G. J. M.
700 1 $aTEMPELMAN, R. J.
700 1 $aRILINGTON, V. D.
700 1 $aRAGAVENDRAN, A.
700 1 $aRANEY, NANCY E.
700 1 $aRAMOS, A. M.
700 1 $aCARDOSO, F. F.
700 1 $aEDWARDS, D. B.
700 1 $aERNST, C. W.
773 $tPLoS ONE, San Francisco$gv. 6, n. 2, e16766, Feb. 2011.
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Registro original: |
Embrapa Pecuária Sul (CPPSUL) |
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Registro Completo
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Biblioteca(s): |
Embrapa Unidades Centrais. |
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Data corrente: |
24/10/1995 |
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Data da última atualização: |
06/06/2019 |
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Autoria: |
GAYET, J. P.; BLEINROTH, E. W.; MATALLO, M.; GARCIA, E. E. C.; GARCIA, A. E.; ARDITO, E. F. G.; BORDIN, M. R. |
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Título: |
Lima ácida "Tahiti" para exportação: procedimentos de colheita e pós-colheita. |
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Ano de publicação: |
1995 |
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Fonte/Imprenta: |
Brasília, DF: EMBRAPA-SPI, MAARA-SDR, 1995. |
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Páginas: |
36 p. |
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Série: |
(Publicações técnicas FRUPEX, 12). |
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Idioma: |
Português |
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Conteúdo: |
Esta obra e resultado de acoes implementadas pelo Programa de Apoio a Producao e Exportacao de Frutas, Hortalicas, Flores e Plantas Ornamentais - FRUPEX - com o apoio do Instituto Interamericano de Cooperacao para a Agricultura - IICA. Para realizar este trabalho, que contem informacoes sobre procedimentos para colheita e pos-colheita na producao e exportacao de lima acida, os autores contaram com a cooperacao de diversas entidades publicas e privadas, tanto na obtencao como na validacao das informacoes contidas neste trabalho. O FRUPEX pretende atualizar esta publicacao a medida que novas tecnologias sejam colocadas a disposicao do setor. Do mesmo modo serao bem acolhidas as criticas e sugestoes que possam contribuir para aprimoros interessados envia-las a coordenacao do FRUPEX. |
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Palavras-Chave: |
Acid lime; Brasil; Citrus fruit; Citrus latifolia tanaka; Classificacao; Controle de doenca; Cultivar; Disease; Exploracao; Export; Exportation; File; Foreing; Fruit; Frupex; Harvest; Lemon; Lima acida; Lima acida "tahiti"; Lima acida 'tahiti'; Lima ácida Tahiti; Lima acida Tahiti - colheita; Lima-ácida; Package; Pos colheita; Post-harvest; Postharvest; Postharvest control; Procedure; Quality; Sweet lime; Transport; Tratamento de producao das frutas - classificacao - conservacao. |
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Thesagro: |
Armazenamento; Colheita; Doença; Embalagem; Exportação; Fisiologia; Fruta; Fruta Cítrica; Fruticultura; Lima; Limão Taiti; Manejo; Norma; Pós-Colheita; Qualidade. |
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Thesaurus NAL: |
Brazil; Citrus; Citrus latifolia; harvesting; limes; Limonia; storage; Tahiti; trade. |
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Categoria do assunto: |
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P Recursos Naturais, Ciências Ambientais e da Terra |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/192622/1/Lima-acida-tahiti-proce.pdf
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Marc: |
LEADER 02977nam a2200889 a 4500
001 1118802
005 2019-06-06
008 1995 bl uuuu u0uu1 u #d
100 1 $aGAYET, J. P.
245 $aLima ácida "Tahiti" para exportação$bprocedimentos de colheita e pós-colheita.
260 $aBrasília, DF: EMBRAPA-SPI, MAARA-SDR$c1995
300 $a36 p.
490 $a(Publicações técnicas FRUPEX, 12).
520 $aEsta obra e resultado de acoes implementadas pelo Programa de Apoio a Producao e Exportacao de Frutas, Hortalicas, Flores e Plantas Ornamentais - FRUPEX - com o apoio do Instituto Interamericano de Cooperacao para a Agricultura - IICA. Para realizar este trabalho, que contem informacoes sobre procedimentos para colheita e pos-colheita na producao e exportacao de lima acida, os autores contaram com a cooperacao de diversas entidades publicas e privadas, tanto na obtencao como na validacao das informacoes contidas neste trabalho. O FRUPEX pretende atualizar esta publicacao a medida que novas tecnologias sejam colocadas a disposicao do setor. Do mesmo modo serao bem acolhidas as criticas e sugestoes que possam contribuir para aprimoros interessados envia-las a coordenacao do FRUPEX.
650 $aBrazil
650 $aCitrus
650 $aCitrus latifolia
650 $aharvesting
650 $alimes
650 $aLimonia
650 $astorage
650 $aTahiti
650 $atrade
650 $aArmazenamento
650 $aColheita
650 $aDoença
650 $aEmbalagem
650 $aExportação
650 $aFisiologia
650 $aFruta
650 $aFruta Cítrica
650 $aFruticultura
650 $aLima
650 $aLimão Taiti
650 $aManejo
650 $aNorma
650 $aPós-Colheita
650 $aQualidade
653 $aAcid lime
653 $aBrasil
653 $aCitrus fruit
653 $aCitrus latifolia tanaka
653 $aClassificacao
653 $aControle de doenca
653 $aCultivar
653 $aDisease
653 $aExploracao
653 $aExport
653 $aExportation
653 $aFile
653 $aForeing
653 $aFruit
653 $aFrupex
653 $aHarvest
653 $aLemon
653 $aLima acida
653 $aLima acida "tahiti"
653 $aLima acida 'tahiti'
653 $aLima ácida Tahiti
653 $aLima acida Tahiti - colheita
653 $aLima-ácida
653 $aPackage
653 $aPos colheita
653 $aPost-harvest
653 $aPostharvest
653 $aPostharvest control
653 $aProcedure
653 $aQuality
653 $aSweet lime
653 $aTransport
653 $aTratamento de producao das frutas - classificacao - conservacao
700 1 $aBLEINROTH, E. W.
700 1 $aMATALLO, M.
700 1 $aGARCIA, E. E. C.
700 1 $aGARCIA, A. E.
700 1 $aARDITO, E. F. G.
700 1 $aBORDIN, M. R.
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Embrapa Unidades Centrais (AI-SEDE) |
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