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Registro Completo |
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Biblioteca(s): |
Embrapa Agroenergia; Embrapa Meio-Norte. |
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Data corrente: |
26/01/2022 |
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Data da última atualização: |
21/02/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SILVA, T. L. C. da; SILVA, V. N. B.; BRAGA, I. de O.; RODRIGUES NETO, J. C.; LEAO, A. P.; RIBEIRO, J. A. de A.; VALADARES, L. F.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. |
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Afiliação: |
THALLITON LUIZ CARVALHO DA SILVA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; VIVIANNY NAYSE BELO SILVA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; ÍTALO DE OLIVEIRA BRAGA, Programa de Pós-Graduação em Biotecnologia Vegetal, Universidade Federal de Lavras, MG, Brasil.; JORGE CANDIDO RODRIGUES NETO, Instituto de Química, Universidade Federal de Goiás, Goiânia, GO, Brasil.; ANDRE PEREIRA LEAO, CNPAE; JOSE ANTONIO DE AQUINO RIBEIRO, CNPAE; LEONARDO FONSECA VALADARES, CNPAE; PATRICIA VERARDI ABDELNUR, CNPAE; CARLOS ANTONIO FERREIRA DE SOUSA, CPAMN; MANOEL TEIXEIRA SOUZA JUNIOR, CNPAE. |
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Título: |
Integration of metabolomics and transcriptomics data to further characterize Gliricidia sepium (Jacq.) Kunth under high salinity stress. |
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Ano de publicação: |
2021 |
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Fonte/Imprenta: |
Plant Genome, e20182, 2021. |
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Idioma: |
Inglês |
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Conteúdo: |
Soil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and genes from this pathway affect mainly short-term salt stress (STS). The single analysis of the transcriptome identified 12 genes coding for proteins that might play a role in gliricidia response at both STS and long-termsalt stress (LTS). Further studies are needed to reveal the mechanisms behind the adaptation response. MenosSoil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and gen... Mostrar Tudo |
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Palavras-Chave: |
Adaptation; Salinization protocol. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/230514/1/The-Plant-Genome-2022-Integration.pdf
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Marc: |
LEADER 02601naa a2200253 a 4500
001 2139329
005 2022-02-21
008 2021 bl uuuu u00u1 u #d
100 1 $aSILVA, T. L. C. da
245 $aIntegration of metabolomics and transcriptomics data to further characterize Gliricidia sepium (Jacq.) Kunth under high salinity stress.$h[electronic resource]
260 $c2021
520 $aSoil salinity is one abiotic stress that threatens agriculture in more than 100 countries. Gliricidia [Gliricidia sepium (Jacq.) Kunth] is a multipurpose tree known for its ability to adapt to a wide range of soils; however, its tolerance limits and responses to salt stress are not yet well understood. In this study, after characterizing the morphophysiological responses of young gliricidia plants to salinity stress, leaf metabolic and transcription profiles were generated and submitted to single and integrated analyses. RNA from leaf samples were subjected to RNA sequencing using an Illumina HiSeq platform and the paired-end strategy. Polar and lipidic fractions from leaf samples were extracted and analyzed on an ultra-high-performance liquid chromatography (UHPLC) coupled with electrospray ionization quadrupole time-offlight high-resolution mass spectrometry (MS) system. Acquired data were analyzed using the OmicsBox, XCMS Online, MetaboAnalyst, and Omics Fusion platforms. The substrate salinization protocol used allowed the identification of two distinct responses to salt stress: tolerance and adaptation. Single analysis on transcriptome and metabolome data sets led to a group of 5,672 transcripts and 107 metabolites differentially expressed in gliricidia leaves under salt stress. The phenylpropanoid biosynthesis was the most affected pathway, with 15 metabolites and three genes differentially expressed. Results showed that the differentially expressed metabolites and genes from this pathway affect mainly short-term salt stress (STS). The single analysis of the transcriptome identified 12 genes coding for proteins that might play a role in gliricidia response at both STS and long-termsalt stress (LTS). Further studies are needed to reveal the mechanisms behind the adaptation response.
653 $aAdaptation
653 $aSalinization protocol
700 1 $aSILVA, V. N. B.
700 1 $aBRAGA, I. de O.
700 1 $aRODRIGUES NETO, J. C.
700 1 $aLEAO, A. P.
700 1 $aRIBEIRO, J. A. de A.
700 1 $aVALADARES, L. F.
700 1 $aABDELNUR, P. V.
700 1 $aSOUSA, C. A. F. de
700 1 $aSOUZA JUNIOR, M. T.
773 $tPlant Genome, e20182, 2021.
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Esconder MarcMostrar Marc Completo |
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Registro original: |
Embrapa Agroenergia (CNPAE) |
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Biblioteca |
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Tipo/Formato |
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| Registros recuperados : 106 | |
| 61. |  | LEAO, A. P.; BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; BRAGA, Í. de O.; VIEIRA, L. R.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) study in Oil Palm (Elaeis guineensis Jacq.) response to abiotic stresses: Part Two-Drought. Plants, v. 11, n. 20, 2786, Oct. 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 4 |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 62. | | BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; VIEIRA, L. R.; LEAO, A. P.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) study in oil palm (ELAEIS GUINEENSIS JACQ.) response to salinity and drought stresses. In: BRAZILIAN CONGRESS OF GENETICS, 67., 2022, Natal, RN. Porto Alegre: Sociedade Brasileira de Genética, 2022. p. 394| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 63. | | BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; VIEIRA, L. R.; LEAO, A. P.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Insights from a Multi-Omics Integration (MOI) study in oil palm (ELAEIS GUINEENSIS JACQ.) response to salinity and drought stresses. In: BRAZILIAN CONGRESS OF GENETICS, 67., 2022, Natal, RN. p. 394| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Meio-Norte. |
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| 64. | | SILVA, T. L. C. da; SILVA, V. N. B.; BRAGA, I. de O.; RODRIGUES NETO, J. C.; LEAO, A. P.; RIBEIRO, J. A. de A.; VALADARES, L. F.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Integration of metabolomics and transcriptomics data to further characterize Gliricidia sepium (Jacq.) Kunth under high salinity stress. Plant Genome, e20182, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte. |
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| 65. | | SILVA, V. N. B.; FERREIRA, T. M. M.; PAIVA, D. S. de; CASARI, R. A. das C. N.; MOLINARI, H. B. C.; KOBAYASHI, A. K.; SOUZA JUNIOR, M. T.; SOUSA, C. A. F. de. Effect of drought on the gas exchange of maize genotypes with different levels of drought tolerance. In: BRAZILIAN CONGRESS OF PLANT PHYSIOLOGY, 16., 2017, São Pedro, SP. Abstract - [S.l.]: Sociedade Brasileira de Fisiologia Vegetal, 2017. p. 109.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 66. | | FERREIRA, T. M. M.; PAIVA, D. S.; CASARI, R. A. das C. N.; SILVA, V. N. B.; MOLINARI, H. B. C.; KOBAYASHI, A. K.; SOUZA JUNIOR, M. T.; SOUSA, C. A. F. de. Effect of drought on the photochemical apparatus of maize plants as evaluated by parameters derived from chlorophyll fluorescence. In: BRAZILIAN CONGRESS OF PLANT PHYSIOLOGY, 16., 2017, São Pedro, SP. Abstract ... [S.l.]: Sociedade Brasileira de Fisiologia Vegetal, 2017. p. 109-110.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 67. | | CASARI, R. A. C. N.; SILVA, V. N. B.; FERREIRA, T. M. M.; SANTOS, T. T.; DIAS, B. B. A.; KOBAYASHI, A. K.; MOLINARI, H. B. C.; SOUZA JUNIOR, M. T.; SOUSA, C. A. F. de. Development of a protocol aiming at the estimation of pigment contents in maize leaves by hyperspectral remote sensing. In: BRAZILIAN CONGRESS OF PLANT PHYSIOLOGY, 16., 2017, São Pedro, SP. Abstract book. [S.l.]: SBFV, 2017. p. 107-108. Na publicação: Cunha BADB, Souza Jr MT.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 68. | | CASARI, R. A. das C. N.; SOUSA, C. A. F. de; SANTOS, T. T.; KOBAYASHI, A. K.; MOLINARI, H. B. C.; SOUZA JUNIOR, M. T.; DIAS, B. B. A.; FERREIRA, T. M. M.; SILVA, V. N. B. Development of a protocol aiming at the estimation of pigment contents in maize leaves by hyperspectral remote sensing. In: BRAZILIAN CONGRESS OF PLANT PHYSIOLOGY, 16., 2017, São Pedro, SP. Abstract - [S.l.]: Sociedade Brasileira de Fisiologia Vegetal, 2017. p. 107-108.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 69. | | SALGADO, F. F.; SILVA, T. L. C. da; VIEIRA, L. R.; SILVA, V. N. B.; LEAO, A. P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; GRYNBERG, P.; SOUZA JUNIOR, M. T. The early response of oil palm (Elaeis guineensis Jacq.) plants to water deprivation: Expression analysis of miRNAs and their putative target genes, and similarities with the response to salinity stress. Frontiers in Plant Science, n. 13, 970113, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte; Embrapa Recursos Genéticos e Biotecnologia. |
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| 70. | | BRAGA, Í. de O.; SILVA, T. L. C. da; SILVA, V. N. B.; RODRIGUES NETO, J. C.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Deep untargeted metabolomics analysis to further characterize the adaptation response of Gliricidia sepium (Jacq.) Walp. to very high salinity stress. Frontiers in Plant Science, v. 13, Art. 869105, May, 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte. |
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| 71. | | SANTOS, T. T.; CASARI, R. A. das C. N.; MOLINARI, H. B. C.; KOBAYASHI, A. K.; SOUZA JUNIOR, M. T.; SILVA, V. N. B.; FERREIRA, T. M. M.; SOUSA, C. A. F. de. Discrimination of responses of corn genotypes to drought through physiological, growth, and yield traits. Pesquisa Agropecuária Brasileira, v. 56, e01948, 2021. Título em português: Discriminação das respostas de genótipos de milho à seca por meio de características fisiológicas e de crescimento e produção.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Agricultura Digital; Embrapa Agroenergia; Embrapa Meio-Norte; Embrapa Unidades Centrais. |
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| 73. | | DIAS, B. B. A.; Martins, P. K.; Ribeira, A. P.; Yamaguchi-Shinozaki, K.; Nakashima, K.; NEPOMUCENO, A. L.; Caldana, C.; Martins, M. C. M.; Centeno, D. C.; SOUSA, C. A. F. de; KOBAYASHI, A. K.; MOLINARI, H. B. C. Metabolite changes in transgenic sugarcane expressing drought tolerance related gene. In: GERMPLASM AND BREEDING, 11.; MOLECULAR BIOLOGY ISSCT WORKSHOP, 8., 2015, Saint-Gilles Réunion Island. Pushing the frontiers of sugarcane improvement: abstract. [S.l]: Ercane, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 74. | | SILVA, V. N. B.; SILVA, T. L. C. da; FERREIRA, T. M. M.; RODRIGUES NETO, J. C.; LEAO, A. P.; RIBEIRO, J. A. de A.; ABDELNUR, P. V.; VALADARES, L. F.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Multi-omics analysis of young Portulaca Oleracea L. plants' responses to High NaCl doses reveals insights into pathways and genes responsive to salinity stress in this halophyte species. Phenomics, 2022. Published online: 15 June 2022.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: C - 0 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Meio-Norte. |
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| 75. | | BITTENCOURT, C. B.; SILVA, T. L. C. da; RODRIGUES NETO, J. C.; LEAO, A. P.; RIBEIRO, J. A. de A.; MAIA, A. de H. N.; SOUSA, C. A. F. de; QUIRINO, B. F.; SOUZA JÚNIOR, M. T. Molecular interplay between non-host resistance, pathogens and basal immunity as a background for fatal yellowing in oil palm (Elaeis guineensis Jacq.) plants. International Journal of Molecular Sciences, v. 24, n. 16, article 12918, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Meio Ambiente; Embrapa Meio-Norte. |
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| 76. | | MUNIZ, C. R.; FREIRE, F. das C. O.; VIANA, F. M. P.; CARDOSO, J. E.; SOUSA, C. A. F. de; GUEDES, M. I. F.; VAN DER SCHOOR, R.; JALINK, H. Monitoring cashew seedlings during interactions with the fungus Lasiodiplodia theobromae using chlorophyll fluorescence imaging. Photosynthetica, v. 52, n. 4, p. 529-537, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Agroindústria Tropical. |
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| 77. | | MARTINS, P. K.; DIAS, B. B. A.; RIBEIRO, A. P.; SHINOZAKI, K. Y.; NAKASHIMA, K.; NEPOMUCENO, A. L.; SOUSA, C. A. F. de; KOBAYASHI, A. K.; MOLINARI, H. B. C. Overexpression of AtDREB2A CA gene in sugarcane. In: GERMPLASM AND BREEDING, 11.; MOLECULAR BIOLOGY ISSCT WORKSHOP, 8., 2015, Saint-Gilles Réunion Island. Pushing the frontiers of sugarcane improvement: abstract. [S.l]: Ercane, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 78. | | MOLINARI, H. B. C.; DIAS, B. B. A.; KOBAYASHI, A. K.; SOUSA, C. A. F. de; SILVA, S. D. dos A. e; RIBEIRO JUNIOR, W. Q.; SHLNOZAKI, K. Y. Production of drought-tolerant transgenic sugarcane plants expressing the atdreb2a gene. In: INTERNATIONAL SYMPOSIUM ON NEW PARADIGMS IN SUGARCANE RESEARCH, 2012, Coimbatore, India. Proceedings... Coimbatore: Society for Sugarcane Research and Development, 2012.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroenergia. |
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| 79. | | SOUSA, C. A. F. de; PAIVA, D S. de; CASARI, R. A. das C. N.; MOLINARI, H. B. C.; OLIVEIRA, N. G. de; KOBAYASHI, A. K.; MAGALHAES, P. C.; GOMIDE, R. L.; SOUZA JUNIOR, M. T. A procedure for maize genotypes discrimination to drought by chlorophyll fluorescence imaging rapid light curves. Plant Methods, v. 13, p. 1-17, 2017.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agroenergia; Embrapa Milho e Sorgo. |
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| 80. | | SALGADO, F. F.; VIEIRA, L. R.; SILVA, V, N. B.; LEAO, A. P.; GRYNBERG, P.; COSTA, M. M. do C.; TOGAWA, R. C.; SOUSA, C. A. F. de; SOUZA JUNIOR, M. T. Prediction and identification of miRNAS in Elaeis Guinensis Jacq and analysis of their expression in oil palm plants under salinity drought stress. In: BRAZILIAN CONGRESS OF GENETICS, 67., 2022, Natal, RN. p. 275| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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| Registros recuperados : 106 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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