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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Amazônia Ocidental; Embrapa Recursos Genéticos e Biotecnologia. |
Data corrente: |
04/10/2011 |
Data da última atualização: |
05/02/2018 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
PROSDOCIMI, P; BITTENCOURT, D.; SILVA, F. R. da; KIRST, M.; MOTA, P. C.; RECH, E. L. |
Afiliação: |
FRANCISCO PROSDOCIMI, UFRJ, UCB; DANIELA MATIAS DE C BITTENCOURT, CPAA; FELIPE RODRIGUES DA SILVA, CNPTIA; MATIAS KIRST, University of Florida; PAULO C. MOTA, UnB; ELIBIO LEOPOLDO RECH FILHO, CENARGEN. |
Título: |
Spinning gland transcriptomics from two main Clades of Spiders (Order: Araneae) - insights on their molecular, anatomical and behavioral evolution. |
Ano de publicação: |
2011 |
Fonte/Imprenta: |
Plos One, San Francisco, v. 6, n. 6, p. 1-15, June 2011. |
DOI: |
10.1371/journal.pone.0021634 |
Idioma: |
Inglês |
Conteúdo: |
Characterized by distinctive evolutionary adaptations, spiders provide a comprehensive system for evolutionary and developmental studies of anatomical organs, including silk and venom production. Here we performed cDNA sequencing using massively parallel sequencers (454 GS-FLX Titanium) to generate ~80,000 reads from the spinning gland of Actinopus spp. (infraorder: Mygalomorphae) and Gasteracantha cancriformis (infraorder: Araneomorphae, Orbiculariae clade). Actinopus spp. retains primitive characteristics on web usage and presents a single undifferentiated spinning gland while the orbiculariae spiders have seven differentiated spinning glands and complex patterns of web usage. MIRA, Celera Assembler and CAP3 software were used to cluster NGS reads for each spider. CAP3 unigenes passed through a pipeline for automatic annotation, classification by biological function, and comparative transcriptomics. Genes related to spider silks were manually curated and analyzed. Although a single spidroin gene family was found in Actinopus spp., a vast repertoire of specialized spider silk proteins was encountered in orbiculariae. Astacin-like metalloproteases (meprin subfamily) were shown to be some of the most sampled unigenes and duplicated gene families in G. cancriformis since its evolutionary split from mygalomorphs. Our results confirm that the evolution of the molecular repertoire of silk proteins was accompanied by the (i) anatomical differentiation of spinning glands and (ii) behavioral complexification in the web usage. Finally, a phylogenetic tree was constructed to cluster most of the known spidroins in gene clades. This is the first large-scale, multi-organism transcriptome for spider spinning glands and a first step into a broad understanding of spider web systems biology and evolution. MenosCharacterized by distinctive evolutionary adaptations, spiders provide a comprehensive system for evolutionary and developmental studies of anatomical organs, including silk and venom production. Here we performed cDNA sequencing using massively parallel sequencers (454 GS-FLX Titanium) to generate ~80,000 reads from the spinning gland of Actinopus spp. (infraorder: Mygalomorphae) and Gasteracantha cancriformis (infraorder: Araneomorphae, Orbiculariae clade). Actinopus spp. retains primitive characteristics on web usage and presents a single undifferentiated spinning gland while the orbiculariae spiders have seven differentiated spinning glands and complex patterns of web usage. MIRA, Celera Assembler and CAP3 software were used to cluster NGS reads for each spider. CAP3 unigenes passed through a pipeline for automatic annotation, classification by biological function, and comparative transcriptomics. Genes related to spider silks were manually curated and analyzed. Although a single spidroin gene family was found in Actinopus spp., a vast repertoire of specialized spider silk proteins was encountered in orbiculariae. Astacin-like metalloproteases (meprin subfamily) were shown to be some of the most sampled unigenes and duplicated gene families in G. cancriformis since its evolutionary split from mygalomorphs. Our results confirm that the evolution of the molecular repertoire of silk proteins was accompanied by the (i) anatomical differentiation of spinning glands and (ii) b... Mostrar Tudo |
Palavras-Chave: |
Aranhas; Molecular anatomical; Sequencia de DNA; Sequenciamento. |
Thesaurus Nal: |
Araneae; Sequence analysis; Transcriptomics. |
Categoria do assunto: |
-- G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/56400/1/journal.pone.0021634.pdf
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/42811/1/spinningjournal.pone.0021634.pdf
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Marc: |
LEADER 02680naa a2200277 a 4500 001 1920286 005 2018-02-05 008 2011 bl uuuu u00u1 u #d 024 7 $a10.1371/journal.pone.0021634$2DOI 100 1 $aPROSDOCIMI, P 245 $aSpinning gland transcriptomics from two main Clades of Spiders (Order$bAraneae) - insights on their molecular, anatomical and behavioral evolution.$h[electronic resource] 260 $c2011 520 $aCharacterized by distinctive evolutionary adaptations, spiders provide a comprehensive system for evolutionary and developmental studies of anatomical organs, including silk and venom production. Here we performed cDNA sequencing using massively parallel sequencers (454 GS-FLX Titanium) to generate ~80,000 reads from the spinning gland of Actinopus spp. (infraorder: Mygalomorphae) and Gasteracantha cancriformis (infraorder: Araneomorphae, Orbiculariae clade). Actinopus spp. retains primitive characteristics on web usage and presents a single undifferentiated spinning gland while the orbiculariae spiders have seven differentiated spinning glands and complex patterns of web usage. MIRA, Celera Assembler and CAP3 software were used to cluster NGS reads for each spider. CAP3 unigenes passed through a pipeline for automatic annotation, classification by biological function, and comparative transcriptomics. Genes related to spider silks were manually curated and analyzed. Although a single spidroin gene family was found in Actinopus spp., a vast repertoire of specialized spider silk proteins was encountered in orbiculariae. Astacin-like metalloproteases (meprin subfamily) were shown to be some of the most sampled unigenes and duplicated gene families in G. cancriformis since its evolutionary split from mygalomorphs. Our results confirm that the evolution of the molecular repertoire of silk proteins was accompanied by the (i) anatomical differentiation of spinning glands and (ii) behavioral complexification in the web usage. Finally, a phylogenetic tree was constructed to cluster most of the known spidroins in gene clades. This is the first large-scale, multi-organism transcriptome for spider spinning glands and a first step into a broad understanding of spider web systems biology and evolution. 650 $aAraneae 650 $aSequence analysis 650 $aTranscriptomics 653 $aAranhas 653 $aMolecular anatomical 653 $aSequencia de DNA 653 $aSequenciamento 700 1 $aBITTENCOURT, D. 700 1 $aSILVA, F. R. da 700 1 $aKIRST, M. 700 1 $aMOTA, P. C. 700 1 $aRECH, E. L. 773 $tPlos One, San Francisco$gv. 6, n. 6, p. 1-15, June 2011.
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Registro original: |
Embrapa Amazônia Ocidental (CPAA) |
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Registros recuperados : 277 | |
61. | | SOUZA, M. A. L de; ALMEIDA, A. A. M.; ANDRADE, A. C.; SILVA, F. R. da; DIAS, Z. Best of both words: using short and long reads to construct UniGenes. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 17., 2009, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2009. p818Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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63. | | SOUZA, E. C.; SALMAN, A. K. D.; CRUZ, P. G. da; CARVALHO, G. A.; SILVA, F. R. F. Ingestive behavior of Girolando heifers in integrated crop, livestock (ICL), and forestry (ICLF) systems. Arquivo Brasileiro de Medicina Veterinária e Zootecnia, v. 73, n. 3, p. 703-710, 2021.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Rondônia. |
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64. | | PROSDOCIMI, F.; BITTENCOURT, D. M. de C.; SILVA, F. R. D.; MOTTA, P. C.; RECH FILHO, E. L. Molecular, behavioral and anatomical sophistication in spider webs: insights from spinning gland RNA-seq experiments in primitive and modern spiders. In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 6., 2010, Ouro Preto. Abstracts... [S.l.: s.n.], 2010. p. 67.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Amazônia Ocidental. |
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65. | | LOPES, J. C.; FREITAS, A. R.; BELTRAME, R. A.; VENANCIO, L. P.; MANHONE, P. R.; SILVA, F. R. N. e. Germinação e vigor de sementes de pau d' alho sob estresse salino. Pesquisa Florestal Brasileira, Colombo, v. 35, n. 82, p. 169-177, abr./jun. 2015. Nota científica.Biblioteca(s): Embrapa Florestas. |
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66. | | TEIXEIRA, L. A. J.; SILVA, F. R. da; MARQUES, E.; VIEIRA, H. B.; MORAES, W.; RODRIGUEZ, M. A. D. Fusarium wilt of banana and nutritional plant status. Fitosanidad, Havana, v. 21, n. especial, 2017. Edição dos resumos do VIII Seminario Científico Internacional de Sanidad Vegetal, Havana, 2017. Por la transición de la agricultura cubana hacia la sostenibilidad. Ref. Foc-12. p. 29-30.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Meio Ambiente. |
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67. | | COTTA, M. G.; VERAS, H. C. T.; BARROS, L. M. G.; ABDELNOOR, R. V.; ALMEIDA, J. D.; SILVA, F. R. Finding novel tissue-specific genes using the new publically available soybean est database. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia. Charles Darwin: a origem das espécies: o livro que transformou a humanidade. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 86.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Soja. |
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68. | | SANTOS, D. B. M.; ALMEIDA, J. D.; BARROS, L. M. G.; CARNEIRO, M.; SILVA, F. R. da. Identificação de ESTs tecido-específicas no banco de dados do genoma funcional de Coffea spp. In: SIMPÓSIO DE PESQUISA DOS CAFÉS DO BRASIL, 5., 2007, Águas de Lindóia, SP. Anais... Brasília, DF: Embrapa Café, 2007. Biotecnologia aplicada à cadeia agroindustrial do café.Tipo: Artigo em Anais de Congresso / Nota Técnica |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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69. | | SANTOS, D. B. M.; SILVA, F. R.; ALMEIDA, J. D.; BARROS, L. M. G.; SOBRAL, L. T. CARNEIRO, M. Identificação de ESTs tecido-específicas no banco de dados do genoma funcional de Coffea spp. In: ENCONTRO DO TALENTO ESTUDANTIL DA EMBRAPA RECURSOS GENÉTICOS E BIOTECNOLOGIA, 11., 2006, Brasília, DF. Anais: resumos dos trabalhos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2006 p. 84.Tipo: Resumo em Anais de Congresso | Circulação/Nível: -- - -- |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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70. | | FERREIRA, B. C.; CASTRO, M. E. B.; REZENDE, S. H. M. S.; SILVA, F. R.; SOUZA, M. L. Identificação do gene pif, requerido na infecção oral, em clones de Anticarsia gemmatalis nucleopolyhedrovírus. In: SIMPÓSIO DE CONTROLE BIOLÓGICO, 10., 2007, Brasília, DF. Inovar para preservar a vida. Resumos. Brasília, DF: Embrapa Recursos Genéticos e Biotecnologia, 2007. (Embrapa Recursos Genéticos e Biotecnologia. Documentos, 250).Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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71. | | LAMEGO, F. P.; CARATTI, F. C.; ROMA-BURGOS, N.; KLUMB, E. K.; DOMINGUES, R.; SILVA, F. R. da. Sequenciamento genômico de capim-annoni. In: CONGRESSO BRASILEIRO DA CIÊNCIA DAS PLANTAS DANINHAS, 32., 2022, Rio Verde. Plantas daninhas e suas interações nos sistemas de produção agrícola: anais. Rio Verde: SBCPD, 2022. p. 65. Editores técnicos: Guilherme Braga Pereira Braz, Naiara Guerra.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agricultura Digital. |
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72. | | LAMEGO, F. P.; CARATTI, F. C.; ROMA-BURGOS, N.; KLUMB, E. K.; DOMINGUES, R.; SILVA, F. R. da. Sequenciamento genômico de capim-annoni. In: CONGRESSO BRASILEIRO DA CIÊNCIA DAS PLANTAS DANINHAS, 32., 2022, Rio Verde. Plantas daninhas e suas interações nos sistemas de produção agrícola: anais. Rio Verde: SBCPD, 2022. p. 65. Editores técnicos: Guilherme Braga Pereira Braz, Naiara Guerra.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Pecuária Sul. |
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73. | | CASTRO, G. M. de; BOITEUX, L. S.; FONSECA, M. E. N.; LOBO, F.; RECH, E.; SILVA, F. R. da. Serendipitomics: a new virus found on an RNA-seq library. In: PLANT & ANIMAL GENOME CONFERENCE, 22., 2014, San Diego, CA. [Abstracts]. San Diego: [s.n.], 2014. Não paginado. P018.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Hortaliças. |
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76. | | MORO, C. F.; GASPAR, M.; SILVA, F. R. da; PATTATHIL, S.; HAHN, M. G.; SALGADO, I.; BRAGA, M. R. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytologist, v. 213, n. 4, p. 1771-1786, Mar. 2017.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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79. | | XAVIER, D. S.; PRABHU, A. S.; SILVA-LOBO, V. L.; FILIPPI, M. C. C.; SILVA, F. R.; RODRIGUES, F. Á. Eficiência de casca de arroz carbonizada no controle da queima-da-bainha em arroz. Tropical Plant Pathology, v. 33, p. S 113, ago. 2008. Suplemento. ref. CAL-049. Edição dos Resumos do XLI Congresso Brasileiro de Fitopatologia, Belo Horizonte, MG, ago. 2008.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Arroz e Feijão. |
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Registros recuperados : 277 | |
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Nenhum registro encontrado para a expressão de busca informada. |
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