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Registro Completo |
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Biblioteca(s): |
Embrapa Agroenergia. |
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Data corrente: |
11/09/2017 |
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Data da última atualização: |
06/04/2021 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
CAMPOS, C. G.; VERAS, H. C. T.; RIBEIRO, J. A. de A.; COSTA, P. P. K. G.; ARAÚJO, K. P.; RODRIGUES, C. M.; ALMEIDA, J. R. M. de; ABDELNUR, P. V. |
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Afiliação: |
CHRISTIANE GONÇALVES CAMPOS, Universidade Federal de Goiás; HENRIQUE CÉSAR TEIXEIRA VERAS, Universidade de Brasília; JOSE ANTONIO DE AQUINO RIBEIRO, CNPAE; PATRICIA PINTO KALIL G COSTA, CNPAE; KATIÚSCIA PEREIRA ARAÚJO; CLENILSON MARTINS RODRIGUES, CNPAE; JOAO RICARDO MOREIRA DE ALMEIDA, CNPAE; PATRICIA VERARDI ABDELNUR, CNPAE. |
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Título: |
New protocol based on UHPLC-MS/MS for quantitation of metabolites in xylose-fermenting yeasts. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
Journal of the American Society for Mass Spectrometry, v. 28, n. 12, p. 2646-2657, 2017. |
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Páginas: |
p. 2646-2657 |
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DOI: |
10.1007/s13361-017-1786-9 |
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Idioma: |
Inglês |
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Conteúdo: |
Abstract: Xylose fermentation is a bottleneck in second-generation ethanol production. As such, a comprehensive understanding of xylose metabolism in naturally xylose-fermenting yeasts is essential for prospection and construction of recombinant yeast strains. The objective of the current study was to establish a reliable metabolomics protocol for quantification of key metabolites of xylose catabolism pathways in yeast, and to apply this protocol to Spathaspora arborariae. Ultra-high performance liquid chromatography coupled to tandem mass spectrometry (UHPLC-MS/MS) was used to quantify metabolites, and afterwards, sample preparation was optimized to examine yeast intracellular metabolites. S. arborariae was cultivated using xylose as a carbon source under aerobic and oxygen-limited conditions. Ion pair chromatography (IPC) and hydrophilic interaction liquid chromatography-tandem mass spectrometry (HILIC-MS/MS) were shown to efficiently quantify 14 and 5 metabolites, respectively, in a more rapid chromatographic protocol than previously described. Thirteen and eleven metabolites were quantified in S. arborariae under aerobic and oxygen-limited conditions, respectively. This targeted metabolomics protocol is shown here to quantify a total of 19 metabolites, including sugars, phosphates, coenzymes, monosaccharides, and alcohols, from xylose catabolism pathways (glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle) in yeast. Furthermore, to our knowledge, this is the first time that intracellular metabolites have been quantified in S. arborariae after xylose consumption. The results indicated that fine control of oxygen levels during fermentation is necessary to optimize ethanol production by S. arborariae. The protocol presented here may be applied to other yeast species and could support yeast genetic engineering to improve second generation ethanol production. Graphical Abstract ?. MenosAbstract: Xylose fermentation is a bottleneck in second-generation ethanol production. As such, a comprehensive understanding of xylose metabolism in naturally xylose-fermenting yeasts is essential for prospection and construction of recombinant yeast strains. The objective of the current study was to establish a reliable metabolomics protocol for quantification of key metabolites of xylose catabolism pathways in yeast, and to apply this protocol to Spathaspora arborariae. Ultra-high performance liquid chromatography coupled to tandem mass spectrometry (UHPLC-MS/MS) was used to quantify metabolites, and afterwards, sample preparation was optimized to examine yeast intracellular metabolites. S. arborariae was cultivated using xylose as a carbon source under aerobic and oxygen-limited conditions. Ion pair chromatography (IPC) and hydrophilic interaction liquid chromatography-tandem mass spectrometry (HILIC-MS/MS) were shown to efficiently quantify 14 and 5 metabolites, respectively, in a more rapid chromatographic protocol than previously described. Thirteen and eleven metabolites were quantified in S. arborariae under aerobic and oxygen-limited conditions, respectively. This targeted metabolomics protocol is shown here to quantify a total of 19 metabolites, including sugars, phosphates, coenzymes, monosaccharides, and alcohols, from xylose catabolism pathways (glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle) in yeast. Furthermore, to our knowledge, this is... Mostrar Tudo |
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Palavras-Chave: |
Spathaspora arborariae; UHPLC-MS/MS; Xylose fermentation. |
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Thesaurus Nal: |
Mass spectrometry; Metabolomics; Xylose. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/163703/1/Abdelnur-ASMassSoectiometry-2017.pdf
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Marc: |
LEADER 02860naa a2200301 a 4500
001 2075378
005 2021-04-06
008 2017 bl uuuu u00u1 u #d
024 7 $a10.1007/s13361-017-1786-9$2DOI
100 1 $aCAMPOS, C. G.
245 $aNew protocol based on UHPLC-MS/MS for quantitation of metabolites in xylose-fermenting yeasts.$h[electronic resource]
260 $c2017
300 $ap. 2646-2657
520 $aAbstract: Xylose fermentation is a bottleneck in second-generation ethanol production. As such, a comprehensive understanding of xylose metabolism in naturally xylose-fermenting yeasts is essential for prospection and construction of recombinant yeast strains. The objective of the current study was to establish a reliable metabolomics protocol for quantification of key metabolites of xylose catabolism pathways in yeast, and to apply this protocol to Spathaspora arborariae. Ultra-high performance liquid chromatography coupled to tandem mass spectrometry (UHPLC-MS/MS) was used to quantify metabolites, and afterwards, sample preparation was optimized to examine yeast intracellular metabolites. S. arborariae was cultivated using xylose as a carbon source under aerobic and oxygen-limited conditions. Ion pair chromatography (IPC) and hydrophilic interaction liquid chromatography-tandem mass spectrometry (HILIC-MS/MS) were shown to efficiently quantify 14 and 5 metabolites, respectively, in a more rapid chromatographic protocol than previously described. Thirteen and eleven metabolites were quantified in S. arborariae under aerobic and oxygen-limited conditions, respectively. This targeted metabolomics protocol is shown here to quantify a total of 19 metabolites, including sugars, phosphates, coenzymes, monosaccharides, and alcohols, from xylose catabolism pathways (glycolysis, pentose phosphate pathway, and tricarboxylic acid cycle) in yeast. Furthermore, to our knowledge, this is the first time that intracellular metabolites have been quantified in S. arborariae after xylose consumption. The results indicated that fine control of oxygen levels during fermentation is necessary to optimize ethanol production by S. arborariae. The protocol presented here may be applied to other yeast species and could support yeast genetic engineering to improve second generation ethanol production. Graphical Abstract ?.
650 $aMass spectrometry
650 $aMetabolomics
650 $aXylose
653 $aSpathaspora arborariae
653 $aUHPLC-MS/MS
653 $aXylose fermentation
700 1 $aVERAS, H. C. T.
700 1 $aRIBEIRO, J. A. de A.
700 1 $aCOSTA, P. P. K. G.
700 1 $aARAÚJO, K. P.
700 1 $aRODRIGUES, C. M.
700 1 $aALMEIDA, J. R. M. de
700 1 $aABDELNUR, P. V.
773 $tJournal of the American Society for Mass Spectrometry$gv. 28, n. 12, p. 2646-2657, 2017.
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Registro original: |
Embrapa Agroenergia (CNPAE) |
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Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
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Registro Completo
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Biblioteca(s): |
Embrapa Pecuária Sudeste. |
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Data corrente: |
14/09/2017 |
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Data da última atualização: |
14/09/2017 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
AFONSO, J.; LINS, L. A.; CASSARO, E. G.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de O.; DINIZ, W. J. da S.; LIMA, A. O. de; SOUZA, M. M. de; ROCHA, M. I. P.; SILVA, J. V. da; BUSS, C. E.; GROMBONI, C. F.; MOURAO, G. B.; NOGUEIRA, A. R. de A.; COUTINHO, L. L.; REGITANO, L. C. de A. |
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Afiliação: |
Juliana Afonso, UFSCar; Laura Albuquerque Lins, UNESP; Érica Galhardo Cassaro, Bolsista/Embrapa Pecuária Sudeste; Polyana Cristine Tizioto, Instituto Federal de Educação, Ciência e Tecnologia Baiano; Priscila Silva Neubern de Oliveira, Bolsista/Embrapa Pecuária Sudeste; Wellison Jarles da Silva Diniz, UFSCar; Andressa Oliveira de Lima, UFSCar; Marcela Maria de Souza, UFSCar; Marina Ibelli Pereira Rocha, UFSCar; Juliana Virginio da Silva, UFSCar; Carlos Eduardo Buss, UFSCar; Caio Fernando Gromboni, Instituto Federal de Educação, Ciência e Tecnologia Baiano; Gerson Barreto Mourão, USP; ANA RITA DE ARAUJO NOGUEIRA, CPPSE; Luiz Lehmann Coutinho, USP; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE. |
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Título: |
Putative genes involved in muscle functioning are differentially expressed in Nelore steers divergent for sodium and potassium concentration. |
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Ano de publicação: |
2017 |
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Fonte/Imprenta: |
In: WORKSHOP ON OMICS STRATEGIES APPLIED TO LIVESTOCK SCIENCE, 1., 2017, Piracicaba, SP. Proceedings... São Carlos, SP: Embrapa Pecuária Sudeste, 2017. |
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Páginas: |
p. 18. |
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Série: |
(Embrapa Pecuária Sudeste. Documentos, 125) |
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Idioma: |
Inglês |
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Notas: |
Editores: Luiz Lehmann Coutinho, ESALQ/USP; Luciana Correia de Almeida Regitano, Embrapa Pecuária Sudeste; Gerson Barreto Mourão, ESALQ/USP; Aline Silva Mello Cesar, ESALQ/USP; Bárbara Silva Vignato, FZEA/USP; Mirele Daiana Poleti, ESALQ/USP; Wellison Jarles da Silva Diniz, UFSCar. |
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Palavras-Chave: |
Gene regulation; RNA-Seq. |
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Thesaurus NAL: |
cattle; minerals. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/163796/1/Ana-Rita-01.pdf
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Marc: |
LEADER 01480nam a2200361 a 4500
001 2075625
005 2017-09-14
008 2017 bl uuuu u00u1 u #d
100 1 $aAFONSO, J.
245 $aPutative genes involved in muscle functioning are differentially expressed in Nelore steers divergent for sodium and potassium concentration.$h[electronic resource]
260 $aIn: WORKSHOP ON OMICS STRATEGIES APPLIED TO LIVESTOCK SCIENCE, 1., 2017, Piracicaba, SP. Proceedings... São Carlos, SP: Embrapa Pecuária Sudeste$c2017
300 $ap. 18.
490 $a(Embrapa Pecuária Sudeste. Documentos, 125)
500 $aEditores: Luiz Lehmann Coutinho, ESALQ/USP; Luciana Correia de Almeida Regitano, Embrapa Pecuária Sudeste; Gerson Barreto Mourão, ESALQ/USP; Aline Silva Mello Cesar, ESALQ/USP; Bárbara Silva Vignato, FZEA/USP; Mirele Daiana Poleti, ESALQ/USP; Wellison Jarles da Silva Diniz, UFSCar.
650 $acattle
650 $aminerals
653 $aGene regulation
653 $aRNA-Seq
700 1 $aLINS, L. A.
700 1 $aCASSARO, E. G.
700 1 $aTIZIOTO, P. C.
700 1 $aOLIVEIRA, P. S. N. de O.
700 1 $aDINIZ, W. J. da S.
700 1 $aLIMA, A. O. de
700 1 $aSOUZA, M. M. de
700 1 $aROCHA, M. I. P.
700 1 $aSILVA, J. V. da
700 1 $aBUSS, C. E.
700 1 $aGROMBONI, C. F.
700 1 $aMOURAO, G. B.
700 1 $aNOGUEIRA, A. R. de A.
700 1 $aCOUTINHO, L. L.
700 1 $aREGITANO, L. C. de A.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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