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Registro Completo |
Biblioteca(s): |
Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
Data corrente: |
31/08/2022 |
Data da última atualização: |
17/11/2022 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
ANDRADE, B. G. N.; DONATONI, F. A. B.; CUADRAT, R. R.; CARDOSO, T. F.; MALHEIROS, J. M.; OLIVEIRA, P. S. N. DE; PETRINI, J.; MOURÃO, G. B.; COUTINHO, L. L.; REECY, J. M.; KOLTES, J. E.; ZERLOTINI NETO, A.; MEDEIROS, S. R. de; BERNDT, A.; PALHARES, J. C. P.; AFLI, H.; REGITANO, L. C. de A. |
Afiliação: |
BRUNO G. N. ANDRADE, Munster Technological University; FLAVIA ALINE BRESSANI DONATONI, CPPSE; RAFAEL R. C. CUADRAT, German Institute of Human Nutrition Potsdam-Rehbrücke (DIfE), Nuthetal, Germany; TAINÃ F. CARDOSO, FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO; JESSICA M. MALHEIROS, UNIVERSIDADE FEDERAL DE SÃO CARLOS; PRISCILA S. N. DE OLIVEIRA, UNIVERSIDADE FEDERAL DE SÃO CARLOS; JULIANA PETRINI, UNIVERSIDADE DE SÃO PAULO; GERSON B. MOURÃO, UNIVERSIDADE DE SÃO PAULO; LUIZ L. COUTINHO, UNIVERSIDADE DE SÃO PAULO; JAMES M. REECY, Iowa State University; JAMES E. KOLTES, Iowa State University; ADHEMAR ZERLOTINI NETO, CNPTIA; SERGIO RAPOSO DE MEDEIROS, CPPSE; ALEXANDRE BERNDT, CPPSE; JULIO CESAR PASCALE PALHARES, CPPSE; HAITHEM AFLI, Munster Technological University; LUCIANA CORREIA DE ALMEIDA REGITANO, CPPSE. |
Título: |
Stool and ruminal microbiome components associated with methane emission and feed efficiency in Nelore beef cattle. |
Ano de publicação: |
2022 |
Fonte/Imprenta: |
Frontiers in Genetics, v. 13, 812828, may, 2022. |
Páginas: |
12 p. |
DOI: |
10.3389/fgene.2022.812828 |
Idioma: |
Inglês |
Conteúdo: |
Background: The impact of extreme changes in weather patterns on the economy and human welfare is one of the biggest challenges our civilization faces. From anthropogenic contributions to climate change, reducing the impact of farming activities is a priority since it is responsible for up to 18% of global greenhouse gas emissions. To this end, we tested whether ruminal and stool microbiome components could be used as biomarkers for methane emission and feed efficiency in bovine by studying 52 Brazilian Nelore bulls belonging to two feed intervention treatment groups, that is, conventional and by-product-based diets.
Results: We identified a total of 5,693 amplicon sequence variants (ASVs) in the Nelore bulls? microbiomes. A Differential abundance analysis with the ANCOM approach identified 30 bacterial and 15 archaeal ASVs as differentially abundant (DA) among treatment groups. An association analysis using Maaslin2 software and a linear mixed model indicated that bacterial ASVs are linked to the host?s residual methane emission (RCH4) and residual feed intake (RFI) phenotype variation, suggesting their potential as targets for interventions or biomarkers.
Conclusion: The feed composition induced significant differences in both abundance and richness of ruminal and stool microbial populations in ruminants of the Nelore breed. The industrial by-product-based dietary treatment applied to our experimental groups influenced the microbiome diversity of bacteria and archaea but not of protozoa. ASVs were associated with RCH4 emission and RFI in ruminal and stool microbiomes. While ruminal ASVs were expected to influence CH4 emission and RFI, the relationship of stool taxa, such as Alistipes and Rikenellaceae (gut group RC9), with these traits was not reported before and might be associated with host health due to their link to anti-inflammatory compounds. Overall, the ASVs associated here have the potential to be used as biomarkers for these complex phenotypes. MenosBackground: The impact of extreme changes in weather patterns on the economy and human welfare is one of the biggest challenges our civilization faces. From anthropogenic contributions to climate change, reducing the impact of farming activities is a priority since it is responsible for up to 18% of global greenhouse gas emissions. To this end, we tested whether ruminal and stool microbiome components could be used as biomarkers for methane emission and feed efficiency in bovine by studying 52 Brazilian Nelore bulls belonging to two feed intervention treatment groups, that is, conventional and by-product-based diets.
Results: We identified a total of 5,693 amplicon sequence variants (ASVs) in the Nelore bulls? microbiomes. A Differential abundance analysis with the ANCOM approach identified 30 bacterial and 15 archaeal ASVs as differentially abundant (DA) among treatment groups. An association analysis using Maaslin2 software and a linear mixed model indicated that bacterial ASVs are linked to the host?s residual methane emission (RCH4) and residual feed intake (RFI) phenotype variation, suggesting their potential as targets for interventions or biomarkers.
Conclusion: The feed composition induced significant differences in both abundance and richness of ruminal and stool microbial populations in ruminants of the Nelore breed. The industrial by-product-based dietary treatment applied to our experimental groups influenced the microbiome diversity of bacteria and archaea but... Mostrar Tudo |
Palavras-Chave: |
Associação; Association; Biomarcadores; Eficiência alimentar; Emissão de metano; Feed efficiency; Methane emission. |
Thesagro: |
Bactéria; Bos Indicus; Gado de Corte. |
Thesaurus Nal: |
Archaea; Beef cattle; Biomarkers. |
Categoria do assunto: |
G Melhoramento Genético |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1145925/1/StoolRuminalMicrobiome.pdf
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Marc: |
LEADER 03376naa a2200493 a 4500 001 2145925 005 2022-11-17 008 2022 bl uuuu u00u1 u #d 024 7 $a10.3389/fgene.2022.812828$2DOI 100 1 $aANDRADE, B. G. N. 245 $aStool and ruminal microbiome components associated with methane emission and feed efficiency in Nelore beef cattle.$h[electronic resource] 260 $c2022 300 $a12 p. 520 $aBackground: The impact of extreme changes in weather patterns on the economy and human welfare is one of the biggest challenges our civilization faces. From anthropogenic contributions to climate change, reducing the impact of farming activities is a priority since it is responsible for up to 18% of global greenhouse gas emissions. To this end, we tested whether ruminal and stool microbiome components could be used as biomarkers for methane emission and feed efficiency in bovine by studying 52 Brazilian Nelore bulls belonging to two feed intervention treatment groups, that is, conventional and by-product-based diets. Results: We identified a total of 5,693 amplicon sequence variants (ASVs) in the Nelore bulls? microbiomes. A Differential abundance analysis with the ANCOM approach identified 30 bacterial and 15 archaeal ASVs as differentially abundant (DA) among treatment groups. An association analysis using Maaslin2 software and a linear mixed model indicated that bacterial ASVs are linked to the host?s residual methane emission (RCH4) and residual feed intake (RFI) phenotype variation, suggesting their potential as targets for interventions or biomarkers. Conclusion: The feed composition induced significant differences in both abundance and richness of ruminal and stool microbial populations in ruminants of the Nelore breed. The industrial by-product-based dietary treatment applied to our experimental groups influenced the microbiome diversity of bacteria and archaea but not of protozoa. ASVs were associated with RCH4 emission and RFI in ruminal and stool microbiomes. While ruminal ASVs were expected to influence CH4 emission and RFI, the relationship of stool taxa, such as Alistipes and Rikenellaceae (gut group RC9), with these traits was not reported before and might be associated with host health due to their link to anti-inflammatory compounds. Overall, the ASVs associated here have the potential to be used as biomarkers for these complex phenotypes. 650 $aArchaea 650 $aBeef cattle 650 $aBiomarkers 650 $aBactéria 650 $aBos Indicus 650 $aGado de Corte 653 $aAssociação 653 $aAssociation 653 $aBiomarcadores 653 $aEficiência alimentar 653 $aEmissão de metano 653 $aFeed efficiency 653 $aMethane emission 700 1 $aDONATONI, F. A. B. 700 1 $aCUADRAT, R. R. 700 1 $aCARDOSO, T. F. 700 1 $aMALHEIROS, J. M. 700 1 $aOLIVEIRA, P. S. N. DE 700 1 $aPETRINI, J. 700 1 $aMOURÃO, G. B. 700 1 $aCOUTINHO, L. L. 700 1 $aREECY, J. M. 700 1 $aKOLTES, J. E. 700 1 $aZERLOTINI NETO, A. 700 1 $aMEDEIROS, S. R. de 700 1 $aBERNDT, A. 700 1 $aPALHARES, J. C. P. 700 1 $aAFLI, H. 700 1 $aREGITANO, L. C. de A. 773 $tFrontiers in Genetics$gv. 13, 812828, may, 2022.
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Registro original: |
Embrapa Pecuária Sudeste (CPPSE) |
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Registros recuperados : 32 | |
21. | | CESAR, A. S. M.; REGITANO, L. C. de A.; REECY, J. M.; POLETI, M. D.; OLIVEIRA, P. S. N. de; OLIVEIRA, G. B. de; MOREIRA, G. C. M.; MUDADU, M. de A.; TIZIOTO, P. L.; KOLTES, J. E.; Fritz-Waters, E.; KRAMER, L.; GARRICK, D.; BEIKI, H.; GEISTLINGER, L.; MOURÃO, G. B.; ZERLOTINI NETO, A.; COUTINHO, L. L. Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits. BMC Genomics, v. 19, p. 1-20, 2018. Article number: 499. Na publicação: Luciana C. A. Regitano, Maurício A. Mudadu, Adhemar Zerlotini.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
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22. | | CESAR, A. S. M.; REGITANO, L. C. de A.; MOURÃO, G. B.; TULLIO, R. R.; LANNA, D. P. D.; NASSU, R. T.; MUDADU, M. de A.; OLIVEIRA, P. S. N.; NASCIMENTO, M. L. do; CHAVES, A. S.; ALENCAR, M. M. de; SONSTEGRAD, T. S.; GARRICK, D. J.; REECY, J. M.; COUTINHO, L. L. Genome-wide association study for intramuscular fat deposition and composition in Nellore cattle. BMC Genetics, v. 15, p. 39, 2014Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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23. | | OLIVEIRA, P. S. N. de; COUTINHO, L. L.; TIZIOTO, P. C.; CESAR, A. S. M.; OLIVEIRA, G. B. de; DINIZ, W, J. da S.; LIMA, A. O. de; REECY, J. M.; MOURÃO, G. B.; ZERLOTINI NETO, A.; REGITANO, L. C. de A. An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle. Scientific Reports, v. 8, p. 1-12, 2018. Article number: 17072. Na publicação: Adhemar Zerlotini, Luciana C. A. Regitano.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital. |
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24. | | OLIVEIRA, P. S. N. de; COUTINHO, L. L.; TIZIOTO, P. C.; CESAR, A. S. M.; OLIVEIRA, G. B. de; DINIZ, W, J. da S.; LIMA, A. O. de; REECY, J. M.; MOURÃO, G. B.; ZERLOTINI NETO, A.; REGITANO, L. C. de A. An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle. Scientific Reports, v. 8, n. 17072, 2018.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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25. | | TIZIOTO, P. C.; TAYLOR, J. F.; DECKER, J. E.; GROMBONI, C. F.; MUDADU, M. de A.; SCHNABEL, R. D.; COUTINHO, L. L.; MOURÃO, G. B.; NASSU, R. T.; DONATONI, F. A. B.; THOLON, P.; SONSTEGARD, T. S.; ALENCAR, M. M. de; TULLIO, R. R.; REECY, J. M.; NOGUEIRA, A. R. de A.; REGITANO, L. C. de A. Effects of quantitative trait loci on iron content of bovine longissimus dorsi muscle. In: WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOK PRODUCTION, 10., 2014, Vancouver. Proceedings... Vancouver: American Society of Animal Science, 2014. 3 p.Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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26. | | OLIVEIRA, P. S. N.; CESAR, A. S. M.; NASCIMENTO, M. L. do; SOUZA, M. M.; TULLIO, R. R.; LANNA, D. P.; SONSTEGARD, T.; MOURÃO, G. B.; REECY, J. M.; GARRICK, D. J.; MUDADU, M. de A.; REGITANO, L. C. de A.; COUTINHO, L. L. Positional candidate genes for residual intake and gain in Nelore beef cattle. In:WORLD CONGRESS OF GENETICS APPLIED TO LIVESTOK PRODUCTION, 10; . 2014, Vancouver. Proceedings... Vancouver: American Society of animal Science, 2014Tipo: Artigo em Anais de Congresso |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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27. | | LIMA, A. O.; MALHEIROS, J. M.; AFONSO, J.; PETRINI, J.; COUTINHO, L. L.; DINIZ, W. J. da S.; DONATONI, F. A. B.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; RIBEIRO, J. A. S.; OLIVEIRA, K. S. de; ROCHA, M. I. P.; ANDRADE, B. G. N.; FUKUMASU, H.; BEIKI, H.; REECY, J. M.; ZERLOTINI NETO, A.; MOURAO, G. B.; REGITANO, L. C. de A. Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency related traits in Nelore steers. Mammalian Genome, 2022.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
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28. | | ANDRADE, B. G. N.; DONATONI, F. A. B.; CUADRAT, R. R. C.; TIZIOTO, P. C.; OLIVEIRA, P. S. N. de; MOURÃO, G. B.; COUTINHO, L. L.; REECY, J. M.; KOLTES, J. E.; WALSH, P.; BERNDT, A.; PALHARES, J. C. P.; REGITANO, L. C. de A. The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen. Journal of Animal Science and Biotechnology, v.11, n. 6, 2020. 10 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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29. | | ANDRADE, B. G. N.; DONATONI, F. A. B.; CUADRAT, R. R.; CARDOSO, T. F.; MALHEIROS, J. M.; OLIVEIRA, P. S. N. DE; PETRINI, J.; MOURÃO, G. B.; COUTINHO, L. L.; REECY, J. M.; KOLTES, J. E.; ZERLOTINI NETO, A.; MEDEIROS, S. R. de; BERNDT, A.; PALHARES, J. C. P.; AFLI, H.; REGITANO, L. C. de A. Stool and ruminal microbiome components associated with methane emission and feed efficiency in Nelore beef cattle. Frontiers in Genetics, v. 13, 812828, may, 2022. 12 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agricultura Digital; Embrapa Pecuária Sudeste. |
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30. | | DECKER, J. E.; MCKAY, S. D.; ROLF, M. M.; ALCALA, A. M.; SONSTEGARD, T. S.; HANOTTE, O.; GOTHERSTROM, A.; SEABURY, C. M.; PRAHARANI, L.; BABAR, M. E.; REGITANO, L. C. de A.; YILDIZ, M. A.; HEATON, M. P.; LIU, W. S.; LEI, C. Z.; REECY, J. M.; SAIF-UR-REHMAN, M.; SCHNABEL, R. D.; TAYLOR, J. F. Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle. Plos Genetics, v. 10, n. 3, e1004254, 2014. 14 p.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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31. | | TIZIOTO, P. C.; TAYLOR, J. F.; DECKER, J. E.; GROMBONI, C. F.; MUDADU, M. de A.; SCHNABEL, R. D.; COUTINHO, L. L.; MOURAO, G. B.; OLIVEIRA, P. S. N. de; SOUZA, M. M.; REECY, J. M.; NASSU, R. T.; DONATONI, F. A. B.; THOLON, P.; SONSTEGARD, T. S.; ALENCAR, M. M. de; TULLIO, R. R.; NOGUEIRA, A. R. de A.; REGITANO, L. C. de A. Detection of quantitative trait loci for mineral content of Nelore longissimus dorsi muscle. Genetics Selection Evolution, v. 47, n. 15, 2015.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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32. | | ALMEIDA, V. V.; SILVA, J. P. M.; SCHINCKEL, A. P.; MEIRA, A. N.; MOREIRA, G. C. M.; GOMES, J. D.; POLETI, M. D.; DARGELIO, M. D. B.; PATINHO, I.; CONTRERAS-CASTILLO, C. J.; COUTINHO, L. L.; MOURÃO, G. B.; REECY, J. M.; KOLTES, D.; SERÃO, N. V. L.; REGITANO, L. C. de A.; FUKUMASU, H.; BRUSTOLINI, A. P. L.; ALENCAR, S. M.; LUCHIARI FILHO, A.; CESAR, A. S. M. Effects of increasing dietary oil inclusion from different sources on growth performance, carcass and meat quality traits, and fatty acid profile in genetically lean immunocastrated male pigs. Livestock Science, v.248, jun. 2021, 104515. 10 p.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
Biblioteca(s): Embrapa Pecuária Sudeste. |
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Registros recuperados : 32 | |
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