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Registro Completo |
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Biblioteca(s): |
Embrapa Mandioca e Fruticultura; Embrapa Tabuleiros Costeiros. |
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Data corrente: |
22/12/2022 |
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Data da última atualização: |
26/12/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
HOHENFELD, C. S.; PASSOS, A. R.; CARVALHO, H. W. L. de; OLIVEIRA, S. A. S. de; OLIVEIRA, E. J. de. |
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Afiliação: |
CAMILA SANTIAGO HOHENFELD; ADRIANA RODRIGUES PASSOS; HELIO WILSON LEMOS DE CARVALHO, CPATC; SAULO ALVES SANTOS DE OLIVEIRA, CNPMF; EDER JORGE DE OLIVEIRA, CNPMF. |
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Título: |
Genome-wide association study and selection for field resistance to cassava root rot disease and productive traits. |
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Ano de publicação: |
2022 |
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Fonte/Imprenta: |
PLos One, v. 17, n. 6, e0270020, June, 2022. |
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DOI: |
| https://doi.org/10.1371/journal.pone.0270020 |
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Idioma: |
Inglês |
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Conteúdo: |
Cassava root rot disease is caused by a complex of soil-borne pathogens and has high economic impacts because it directly affects the tuberous roots, which are the main commercial product. This study aimed to evaluate cassava genotypes for resistance to root rot disease in a field with a previous history of high disease incidence. It also aimed to identify possible genomic regions associated with field resistance based on genome-wide association studies. A total of 148 genotypes from Embrapa Mandioca and Fruticultura were evaluated over two years, including improved materials and curated germplasms. Analysis of phenotypic data was conducted, as well as a genomic association analysis, based on the general linear model, mixed linear model, and fixed and random model circulating probability unification. The observed high disease index (ω) was directly correlated with genotype survival, affecting plant height, shoot yield, and fresh root yield. The genotypes were grouped into five clusters, which were classified according to level of root rot resistance (i.e., extremely susceptible, susceptible, moderately susceptible, moderately resistant, and resistant). The 10 genotypes with the best performance in the field were selected as potential progenitors for the development of segregating progenies. Estimates of genomic kinship between these genotypes ranged from -0.183 to 0.671. The genotypes BGM-1171 and BGM-1190 showed the lowest degree of kinship with the other selected sources of resistance. The genotypes BGM-0209, BGM-0398, and BGM-0659 showed negative kinship values with most elite varieties, while BGM-0659 presented negative kinship with all landraces. A genome-wide association analysis detected five significant single nucleotide polymorphisms related to defense mechanisms against biotic and abiotic stresses, with putative association with fresh root yield in soil infested with root rot pathogens. These findings can be utilized to develop molecular selection for root rot resistance in cassava. MenosCassava root rot disease is caused by a complex of soil-borne pathogens and has high economic impacts because it directly affects the tuberous roots, which are the main commercial product. This study aimed to evaluate cassava genotypes for resistance to root rot disease in a field with a previous history of high disease incidence. It also aimed to identify possible genomic regions associated with field resistance based on genome-wide association studies. A total of 148 genotypes from Embrapa Mandioca and Fruticultura were evaluated over two years, including improved materials and curated germplasms. Analysis of phenotypic data was conducted, as well as a genomic association analysis, based on the general linear model, mixed linear model, and fixed and random model circulating probability unification. The observed high disease index (ω) was directly correlated with genotype survival, affecting plant height, shoot yield, and fresh root yield. The genotypes were grouped into five clusters, which were classified according to level of root rot resistance (i.e., extremely susceptible, susceptible, moderately susceptible, moderately resistant, and resistant). The 10 genotypes with the best performance in the field were selected as potential progenitors for the development of segregating progenies. Estimates of genomic kinship between these genotypes ranged from -0.183 to 0.671. The genotypes BGM-1171 and BGM-1190 showed the lowest degree of kinship with the other selected sour... Mostrar Tudo |
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Thesagro: |
Doença de Planta; Mandioca; Patógeno; Podridão Radicular; Raiz. |
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Thesaurus Nal: |
Cassava; Pathogens; Plant pathogens; Root diseases. |
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Categoria do assunto: |
F Plantas e Produtos de Origem Vegetal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1150273/1/Genome-wide-association-study-and-selection....pdf
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Marc: |
LEADER 02904naa a2200289 a 4500
001 2150273
005 2022-12-26
008 2022 bl uuuu u00u1 u #d
024 7 $a| https://doi.org/10.1371/journal.pone.0270020$2DOI
100 1 $aHOHENFELD, C. S.
245 $aGenome-wide association study and selection for field resistance to cassava root rot disease and productive traits.$h[electronic resource]
260 $c2022
520 $aCassava root rot disease is caused by a complex of soil-borne pathogens and has high economic impacts because it directly affects the tuberous roots, which are the main commercial product. This study aimed to evaluate cassava genotypes for resistance to root rot disease in a field with a previous history of high disease incidence. It also aimed to identify possible genomic regions associated with field resistance based on genome-wide association studies. A total of 148 genotypes from Embrapa Mandioca and Fruticultura were evaluated over two years, including improved materials and curated germplasms. Analysis of phenotypic data was conducted, as well as a genomic association analysis, based on the general linear model, mixed linear model, and fixed and random model circulating probability unification. The observed high disease index (ω) was directly correlated with genotype survival, affecting plant height, shoot yield, and fresh root yield. The genotypes were grouped into five clusters, which were classified according to level of root rot resistance (i.e., extremely susceptible, susceptible, moderately susceptible, moderately resistant, and resistant). The 10 genotypes with the best performance in the field were selected as potential progenitors for the development of segregating progenies. Estimates of genomic kinship between these genotypes ranged from -0.183 to 0.671. The genotypes BGM-1171 and BGM-1190 showed the lowest degree of kinship with the other selected sources of resistance. The genotypes BGM-0209, BGM-0398, and BGM-0659 showed negative kinship values with most elite varieties, while BGM-0659 presented negative kinship with all landraces. A genome-wide association analysis detected five significant single nucleotide polymorphisms related to defense mechanisms against biotic and abiotic stresses, with putative association with fresh root yield in soil infested with root rot pathogens. These findings can be utilized to develop molecular selection for root rot resistance in cassava.
650 $aCassava
650 $aPathogens
650 $aPlant pathogens
650 $aRoot diseases
650 $aDoença de Planta
650 $aMandioca
650 $aPatógeno
650 $aPodridão Radicular
650 $aRaiz
700 1 $aPASSOS, A. R.
700 1 $aCARVALHO, H. W. L. de
700 1 $aOLIVEIRA, S. A. S. de
700 1 $aOLIVEIRA, E. J. de
773 $tPLos One$gv. 17, n. 6, e0270020, June, 2022.
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Registro original: |
Embrapa Tabuleiros Costeiros (CPATC) |
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| Registros recuperados : 162 | |
| 41. |  | HOHENFELD, C. S.; SANTANA, M. P.; OLIVEIRA, E. J. de; OLIVEIRA, S. A. S. de. Severidade da colonização interna em quatro variedades de mandioca inoculadas com Fusarium spp., Botryosphaeria spp. e Phytophthora spp. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 9., 2015: Cruz das Almas, BA. Pesquisa: para quê? para quem? : resumos. Brasília, DF : Embrapa, 2015.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 45. | | HOHENFELD, C. S.; SANTANA, M. P.; SILVA, M. A. da; OLIVEIRA, E. J. de; OLIVEIRA, S. A. S. de. Agressividade de isolados de Phytophthora spp., Botryosphaeria spp. e Fusarium spp. associados com a podridão radicular da mandioca. In: CONGRESSO BRASILEIRO DE MANDIOCA, 16.; CONGRESSO LATINO-AMERICANO E CARIBENHO DE MANDIOCA, 2015, Foz do Iguaçu. Integração: segurança alimentar e geração de renda: anais. Foz do Iguaçu: SBM, 2015. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 46. | | SANTOS, W. N.; PESTANA, K. N.; OLIVEIRA, S. A. S. de; AMORIM, E. P.; HADDAD, F.; FERREIRA, C. F. Avaliação da diversidade genética e testes de agressividade com isolados de Mycosphaerella musicola. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 8., 2014, Cruz das Almas, Ba. Pesquisa: despertando mentes para a inovação e transformando o futuro :[anais]. Cruz das Almas, Ba, Embrapa Mandioca e Fruticultura, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 47. | | VELAME, D. C.; COSTA, S. N.; AMORIM, E. P.; BARBOSA, F. F. L.; OLIVEIRA, S. A. S. de; HADDAD, F. Caracterização de isolados de Fusarium oxysporum f. sp. Cubense por marcadores SSR e compatibilidade vegetativa. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 6., 2012, Cruz das Almas. Anais... Cruz das Almas: Embrapa Mandioca e Fruticultura, 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 49. | | SANTOS, N. S. da C.; AGUILAR-VILDOSO, C. I.; OLIVEIRA, E. J. de; HADDAD, F.; OLIVEIRA, S. A. S. de. Criação e enriquecimento da coleção de Xanthomonas axonopodis pv. manihotis, agente causal da bacteriose da mandioca. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 6., 2012, Cruz das Almas. Anais... Cruz das Almas: Embrapa Mandioca e Fruticultura, 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 52. | | COSTA, S. N.; OLIVEIRA, S. A. S. de; FERREIRA, C. F.; AMORIM, E. P.; BARBOSA, F. F. L.; HADDAD, F. Diversidade genética de isolados de Fusarium Oxysporum f. sp. Cubense do nordeste, Sudeste e Sul do Brasil. Genetic diversisty of Fusarium Oxysporum f. sp. cubense isolates from Northeast, Southeast and South of Brazil. In: REUNIÃO INTERNACIONAL ACORBAT, 20., 2013, Fortaleza. Acorbat: 40 anos compartilhando ciência e tecnologia. Fortaleza: Instituto Frutal: Acorbat Internacional, 2013. 320 p.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 53. | | SANTANA, L. R. de; SANTOS FILHO, H. P.; BARBOSA, C. de J.; OLIVEIRA, S. A. S. de. Diversidade genética da população do fungo Lasiodiplodia theobromae associada a espécies e híbridos de citros. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 8., 2014, Cruz das Almas, Ba. Pesquisa: despertando mentes para a inovação e transformando o futuro : [anais]. Cruz das Almas, BA, Embrapa Mandioca e Fruticultura, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 56. | | ANDRADE, W. B. de; PEIXOUTO, Y. S.; VILARINHOS, A. D.; HADDAD, F.; OLIVEIRA, S. A. S. de; FERREIRA, C. F. Construção de micoteca de Mycosphaerella musicola no Estado da Bahia. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 6., 2012, Cruz das Almas. Anais... Cruz das Almas: Embrapa Mandioca e Fruticultura, 2012.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 57. | | OLIVEIRA, S. A. S. de; RANGEL, M. A. S.; SANTOS, V. da S.; RINGENBERG, R.; OLIVEIRA, E. J. de. Resistance of cassava hybrids and commercial varieties to bacterial blight, anthracnose and superelongation disease in Midwest Region of Brazil. In: INTERNATIONAL HORTICULTURAL CONGRESS, 29., 2014, Brisbane. Sustaining lives, livelihoods and landscapes. [Abstracts...]. Brisbane: AuSHS : ISHS, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| 58. | | OLIVEIRA, S. A. S. de; HOHENFELD, C. S.; SANTOS, V. da S.; HADDAD, F.; OLIVEIRA, E. J. de. Resistance to Fusarium dry root rot disease in cassava accessions. Pesquisa Agropecuária Brasileira, Brasília, v.48, n.10, p.1414-1417, out. 2013. Notas Científicas.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Mandioca e Fruticultura; Embrapa Unidades Centrais. |
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| 59. | | SANTOS, V. O.; RIBEIRO, L. R.; FERREIRA, M. dos S.; OLIVEIRA, S. A. S. de; AMORIM, E. P.; HADDAD, F. Potenciais hospedeiros alternativos de Fusarium oxysporum f. sp. cubense, agente causal do mal-do-Panamá. In: JORNADA CIENTÍFICA EMBRAPA MANDIOCA E FRUTICULTURA, 10., 2016: Cruz das Almas, BA. Traduzindo ciência para o mundo : resumos. Brasília, DF : Embrapa, 2016.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Mandioca e Fruticultura. |
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| Registros recuperados : 162 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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