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Registro Completo |
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Biblioteca(s): |
Embrapa Agropecuária Oeste; Embrapa Soja. |
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Data corrente: |
22/11/2016 |
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Data da última atualização: |
13/12/2016 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. |
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Afiliação: |
ERNESTO ORMEÑO-ORRILLO, Universidad Nacional Agraria La Molina; DOUGLAS FABIANO GOMES, CAPES; PABLO DEL CERRO, Universidad de Sevilla; ANA TEREZA RIBEIRO VASCONCELOS, LNCC; CARLOS CANCHAYA, University of Vigo; LUIZ GONZAGA PAULA ALMEIDA, LNCC; FABIO MARTINS MERCANTE, CPAO; FRANCISCO JAVIER OLLERO, Universidad de Sevilla; MANUEL MEGÍAS, Universidad de Sevilla; MARIANGELA HUNGRIA DA CUNHA, CNPSO. |
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Título: |
Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
BMC Genomics, v. 17, n. 534, 2016. |
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DOI: |
10.1186/s12864-016-2859-z |
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Idioma: |
Português |
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Conteúdo: |
Common bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different.
A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis. MenosCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar t... Mostrar Tudo |
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Palavras-Chave: |
Fixação biológica de nitrogênio. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/150393/1/2016OrmenoOrrilloetalBMCGenomics.pdf
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Marc: |
LEADER 03133naa a2200253 a 4500
001 2058569
005 2016-12-13
008 2016 bl uuuu u00u1 u #d
024 7 $a10.1186/s12864-016-2859-z$2DOI
100 1 $aORMEÑO-ORRILLO, E.
245 $aGenome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8$bsearching for genes related to a successful symbiotic performance under stressful conditions.$h[electronic resource]
260 $c2016
520 $aCommon bean (Phaseolus vulgaris L.) is the most important legume cropped worldwide for food production and its agronomic performance can be greatly improved if the benefits from symbiotic nitrogen fixation are maximized. The legume is known for its high promiscuity in nodulating with several Rhizobium species, but those belonging to the Rhizobium tropici ?group? are the most successful and efficient in fixing nitrogen in tropical acid soils. Rhizobium leucaenae belongs to this group, which is abundant in the Brazilian ?Cerrados? soils and frequently submitted to several environmental stresses. Here we present the first high-quality genome drafts of R. leucaenae, including the type strain CFN 299T and the very efficient strain CPAO 29.8. Our main objective was to identify features that explain the successful capacity of R. leucaenae in nodulating common bean under stressful environmental conditions. The genomes of R. leucaenae strains CFN 299T and CPAO 29.8 were estimated at 6.7?6.8 Mbp; 7015 and 6899 coding sequences (CDS) were predicted, respectively, 6264 of which are common to both strains. The genomes of both strains present a large number of CDS that may confer tolerance of high temperatures, acid soils, salinity and water deficiency. Types I, II, IV-pili, IV and V secretion systems were present in both strains and might help soil and host colonization as well as the symbiotic performance under stressful conditions. The symbiotic plasmid of CPAO 29.8 is highly similar to already described tropici pSyms, including five copies of nodD and three of nodA genes. R. leucaenae CFN 299T is capable of synthesizing Nod factors in the absence of flavonoids when submitted to osmotic stress, indicating that under abiotic stress the regulation of nod genes might be different. A detailed study of the genes putatively related to stress tolerance in R. leucaenae highlighted an intricate pattern comprising a variety of mechanisms that are probably orchestrated to tolerate the stressful conditions to which the strains are submitted on a daily basis. The capacity to synthesize Nod factors under abiotic stress might follow the same regulatory pathways as in CIAT 899T and may help both to improve bacterial survival and to expand host range to guarantee the perpetuation of the symbiosis.
653 $aFixação biológica de nitrogênio
700 1 $aGOMES, D. F.
700 1 $aCERRO, P. del
700 1 $aVASCONCELOS, A. T. R.
700 1 $aCANCHAYA, C.
700 1 $aALMEIDA, L. G. P.
700 1 $aMERCANTE, F. M.
700 1 $aJAVIER OLLERO, F.
700 1 $aMEGÍAS, M.
700 1 $aHUNGRIA, M.
773 $tBMC Genomics$gv. 17, n. 534, 2016.
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Registro original: |
Embrapa Agropecuária Oeste (CPAO) |
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| Registros recuperados : 55 | |
| 41. |  | MATEOS, C.; GÓMEZ, R. B.; GARCIA-TRIGUEROS, C.; CHUEIRE, L. M. O.; LAMRABET, Y.; HUNGRIA, M.; MANYANI, H.; MEGÍAS, M.; SOUSA, C. Genotypic and phenotypic characterization of soybean sinorhizobial strains isolated from brazilian soils. In: INTERNATIONAL CONGRESS ON NITROGEN FIXATION, 12., 1999, Foz do Iguacu. Nitrogen fixation: from molecules to crop productivity: proceedings. Dordrechet: Kluwer, 2000. p. 191. (Current Plant Science and Biotechnology in Agriculture, 38). Editado por Fabio O. Pedrosa, Mariangela Hungria, Geoffrey Yates, William E. Newton.| Biblioteca(s): Embrapa Soja. |
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| 42. | | HUNGRIA, M.; CHUEIRE, L. M. O.; ANDRADE, D. S.; PROBANZA, A.; GUTTIERREZ-MANERO, F.J.; MOSTASSO, L.; VARGAS, M. A. T.; MEGIAS, M. Selection of Rhizobium strains for the common bean crop. In: INTERNATIONAL CONGRESS ON NITROGEN FIXATION, 12., 1999, Foz do Iguacu. Nitrogen fixation: from molecules to crop productivity - proceedings. Dordrechet: Kluwer, 2000. p.624. (Current Plant Science and Biotechnology in Agriculture, v.38). Editado por Fabio O. Pedrosa, Mariangela Hungria, Geoffrey Yates, William E. Newton.| Biblioteca(s): Embrapa Cerrados. |
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| 43. | | HUNGRIA, M.; CHUEIRE, L. M. de O.; ANDRADE, D. S.; PROBANZA, A.; GUTTIERREZ-MAÑERO, F. J.; MOSTASSO, L.; VARGAS, M. A. T.; MEGIAS, M. Selection of Rhizobium strains for the common bean crop. In: INTERNATIONAL CONGRESS ON NITROGEN FIXATION, 12., 1999, Foz do Iguacu. Nitrogen fixation: from molecules to crop productivity: proceedings. Dordrechet: Kluwer, 2000. p. 624. (Current Plant Science and Biotechnology in Agriculture, 38). Editado por Fabio O. Pedrosa, Mariangela Hungria, Geoffrey Yates, William E. Newton.| Biblioteca(s): Embrapa Soja. |
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| 44. | | GOMES, D. F; TULLIO, L. D.; DEL CERRO, P.; NAKATANI, A. S.; ROLLA-SANTOS, A. A. P.; GIL-SERRANO, A.; MEGÍAS, M.; OLLERO, F. J.; HUNGRIA, M. Regulation of hsnT, nodF and nodE genes in Rhizobium tropici CIAT 899 and their roles in the synthesis of Nod factors and in the symbiosis. Microbiology, v. 165, p. 990-1000, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Soja. |
|  |
| 46. | | ORMEÑO-ORRILLO, E.; GOMES, D. F.; CERRO, P. del; VASCONCELOS, A. T. R.; CANCHAYA, C.; ALMEIDA, L. G. P.; MERCANTE, F. M.; JAVIER OLLERO, F.; MEGÍAS, M.; HUNGRIA, M. Genome of Rhizobium leucaenae strains CFN 299T and CPAO 29.8: searching for genes related to a successful symbiotic performance under stressful conditions. BMC Genomics, v. 17, n. 534, 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agropecuária Oeste; Embrapa Soja. |
|  |
| 47. | | CERRO, P. del; ROLLA-SANTOS, A. A. P.; GOMES, D. F.; MARKS, B. B.; PÉREZ-MONTAÑO, F.; RODRÍGUEZ-CARVAJAL, M. A.; NAKATANI, A. S.; GIL-SERRANO, A.; MEGÍAS, M.; OLLERO, F. J.; HUNGRIA, M. Regulatory nodD1 and nodD2 genes of Rhizobium tropici strain CIAT 899 and their roles in the early stages of molecular signaling and host-legume nodulation. BMC Genomics, London, [S. l.], v. 16, n. 251, Mar. 2015. 13 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 48. | | FAGOTTI, D. dos S. L.; ABRANTES, J. L. F.; CEREZINI, P.; FUKAMI, J.; NOGUEIRA, M. A.; CERRO, P. del; VALDERRAMA-FERNANDEZ, R.; OLLERO, F. J.; MEGIAS, M.; HUNGRIA, M. Quorum sensing communication: Bradyrhizobium-Azospirillum interaction via N-acyl-homoserine lactones in the promotion of soybean symbiosis. Journal of Basic Microbiology, v. 59, p. 38-53, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 49. | | SANTOS, I. R.; RIBEIRO, D. G.; TÁVORA, F. T. P. K.; MAXIMIANO, M. R.; RABELO, A. C.; RIOS, T. B.; REIS JUNIOR, F. B. dos; MEGÍAS, M.; SILVA, L. P. da; REIS, A. M. dos. Priming of defense-related genes in Brassica oleracea var. capitata using concentrated metabolites produced by Rhizobium tropici CIAT 899. Brazilian Journal of Microbiology, 2022. On-line first. Na publicação: Fábio Bueno Reis Junior, Luciano Paulino Silva, Angela Mehta.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Cerrados; Embrapa Recursos Genéticos e Biotecnologia. |
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| 50. | | CERRO, P. del; ROLLA-SANTOS, A. A. P.; VALDERRAMA-FERNANDEZ, R.; GIL-SERRANO, A.; BELLOGÍN, R. A.; GOMES, D. F.; MONTAÑO, F. P.; MEGÍAS, M.; HUNGRIA, M.; JAVIER OLLERO, F. NrcR, a new transcriptional regulator of Rhizobium tropici CIAT 899 involved in the Legume root-nodule symbiosis. PLOS One, v. 11, n. 4, e0154029, Apr. 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 51. | | PINTO, F. G. S.; CHUEIRE, L. M. O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; ALMEIDA, L. G. P.; SOUZA, R. C.; MENNA, P.; BARCELLOS, F. G.; MEGÍAS, M.; HUNGRIA, M. Novel genes related to nodulation, secretion systems, and surface structures revealed by a genome draft of Rhizobium tropici strain PRF 81. Functional & Integrative Genomics, Heidelberg, v. 9, n. 2, p. 263-270, May 2009.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 52. | | CERRO, P. del; AYALA-GARCÍA, P.; JIMÉNEZ-GUERRERO, I.; LÓPEZ-BAENA, F. J.; VINARDELL, J. M.; MEGÍAS, M.; HUNGRIA, M.; GIL-SERRANO, A. M.; PÉREZ-MONTÃNO, F.; OLLERO, F. J. The non-flavonoid inducible nodA3 and the flavonoid regulated nodA1 genes of Rhizobium tropici CIAT 899 guarantee nod factor production and nodulation of different host legumes. Plant and Soil, v. 440, p. 185-200, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 53. | | CERRO, P. del; ROLLA-SANTOS, A. A. P.; GOMES, D. F.; MARKS, B. B.; ESPUNY, M. del R.; RODRÍGUEZ-CARVAJAL, M. A.; SORIA-DÍAZ, M. E.; NAKATANI, A. S.; HUNGRIA, M.; JAVIER OLLERO, F.; MEGÍAS, M. Opening the "black box" of nodD3, nodD4 and nodD5 genes of Rhizobium tropici strain CIAT 899. BMC Genomics, v. 16, n. 1, p. 864, Oct. 2015.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 54. | | RODRIGUEZ-NAVARRO, D. N.; BELLOGIN, R.; BUENDIA, A. M.; CAMACHO, M.; CUBO, T.; CHUEIRE, L. M. O.; DAZA, A.; LYRA, M. C.; ESPUNY, R.; GOMEZ, R.; HUNGRIA, M.; MANYANI, H.; MEGÍAS, M.; OLLERO, F. J.; RUIZ-SAINZ, J. E.; SANTAMARIA, C.; SOUSA, C.; TEMPRANO, F.; YANG, S. S.; ZHOU, J. C. Biodiversity and selection of Sinorhizobium fredii strains for soybean inoculants. In: INTERNATIONAL CONGRESS ON NITROGEN FIXATION, 12., 1999, Foz do Iguacu. Nitrogen fixation: from molecules to crop productivity: proceedings. Dordrechet: Kluwer, 2000. p. 183-184. (Current Plant Science and Biotechnology in Agriculture, 38). Editado por Fabio O. Pedrosa, Mariangela Hungria, Geoffrey Yates, William E. Newton.| Biblioteca(s): Embrapa Soja. |
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| 55. | | ORMEÑO-ORRILLO, E.; MENNA, P.; ALMEIDA, L. G. P.; JAVIER OLLERO, F.; NICOLÁS, M. F.; RODRIGUES, E. P.; NAKATANI, A. S.; BATISTA, J. S. S.; CHUEIRE, L. M. de O.; SOUZA, R. C.; VASCONCELOS, A. T. R.; MEGÍAS, M.; HUNGRIA, M.; MARTÍNEZ-ROMERO, E. Genomic basis of broad host range and environmental adaptability of Rhizobium tropici CIAT 899 and Rhizobium sp. PRF 81 which are used in inoculants for common bean (Phaseolus vulgaris L.). BMC Genomics, v. 13, n. 735, 2012. 26 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 55 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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