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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
02/09/2013 |
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Data da última atualização: |
04/04/2022 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. |
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Afiliação: |
VALÉRIA S. LOPES-CAITAR; MAYRA C. C. G. DE CARVALHO, UENP; MARCIA KAMOGAE KUWAHARA, CNPSO; ALEXANDRE LIMA NEPOMUCENO, SRI; WALDIR PEREIRA DIAS, CNPSO; RICARDO VILELA ABDELNOOR, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO. |
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Título: |
Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
BMC Genomics, v. 14, article 577, 2013. |
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Páginas: |
17 p. |
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ISSN: |
1471-2164 |
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DOI: |
10.1186/1471-2164-14-577 |
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Idioma: |
Inglês |
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Conteúdo: |
The Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function. MenosThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. ... Mostrar Tudo |
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Thesagro: |
Soja. |
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Thesaurus Nal: |
Soybeans. |
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Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/102608/1/genome-wide.pdf
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Marc: |
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001 1965345
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008 2013 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/1471-2164-14-577$2DOI
100 1 $aLOPES-CAITAR, V. S.
245 $aGenome-wide analysis of the Hsp20 gene family in soybean$bcomprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses.$h[electronic resource]
260 $c2013
300 $a17 p.
520 $aThe Hsp20 genes are associated with stress caused by HS and other abiotic factors, but have recently been found to be associated with the response to biotic stresses. These genes represent the most abundant class among the HSPs in plants, but little is known about this gene family in soybean. Because of their apparent multifunctionality, these proteins are promising targets for developing crop varieties that are better adapted to biotic and abiotic stresses. Thus, in the present study an in silico identification of GmHsp20 gene family members was performed, and the genes were characterized and subjected to in vivo expression analysis under biotic and abiotic stresses. A search of the available soybean genome databases revealed 51 gene models as potential GmHsp20 candidates. The 51 GmHsp20 genes were distributed across a total of 15 subfamilies where a specific predicted secondary structure was identified. Based on in vivo analysis, only 47 soybean Hsp20 genes were responsive to heat shock stress. Among the GmHsp20 genes that were potentials HSR, five were also cold-induced, and another five, in addition to one GmAcd gene, were responsive to Meloidogyne javanica infection. Furthermore, one predicted GmHsp20 was shown to be responsive only to nematode infection; no expression change was detected under other stress conditions. Some of the biotic stress-responsive GmHsp20 genes exhibited a divergent expression pattern between resistant and susceptible soybean genotypes under M. javanica infection. The putative regulatory elements presenting some conservation level in the GmHsp20 promoters included HSE, W-box, CAAT box, and TA-rich elements. Some of these putative elements showed a unique occurrence pattern among genes responsive to nematode infection. The evolution of Hsp20 family in soybean genome has most likely involved a total of 23 gene duplications. The obtained expression profiles revealed that the majority of the 51 GmHsp20 candidates are induced under HT, but other members of this family could also be involved in normal cellular functions, unrelated to HT. Some of the GmHsp20 genes might be specialized to respond to nematode stress, and the predicted promoter structure of these genes seems to have a particular conserved pattern related to their biological function.
650 $aSoybeans
650 $aSoja
700 1 $aCARVALHO, M. C. C. G. de
700 1 $aLUANA M. DARBEN
700 1 $aKUWAHARA, M. K.
700 1 $aNEPOMUCENO, A. L.
700 1 $aDIAS, W. P.
700 1 $aABDELNOOR, R. V.
700 1 $aMARCELINO-GUIMARÃES, F. C.
773 $tBMC Genomics$gv. 14, article 577, 2013.
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Registro original: |
Embrapa Soja (CNPSO) |
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| Registros recuperados : 188 | |
| 101. |  | SILVA, E.; BELINATO, J. R.; PORTO, C.; NUNES, E. de O.; MARCELINO-GUIMARÃES, F. C.; MEYER, M. C.; PILAU, E. J. Soybean metabolomics based in mass spectrometry: decoding the plant's signaling and defense responses under biotic stress. Journal of Agricultural and Food Chemistry, v. 69, n. 26, p. 7257-7267, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja; Embrapa Suínos e Aves. |
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| 102. | | RECHENMACHER, C.; KAPPAUN, K.; WIEBKE-STROHM, B.; BUSATTO, L. A. de O.; CORSO, M. C. M.; MARCELINO-GUIMARÃES, F. C.; CARLINI, C. R.; BODANESE-ZANETTINI, M. H. Soyuretox, a new peptide to confer partial resistance to soybean root-knot nematodes. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls. Abstract... Abstract: 664.pdf.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 103. | | NOMURA, R. B. G.; LOPES-CAITAR, V. S.; HISHINUMA-SILVA, S. M.; LOPES, I. de O. N.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Silencing of an effector candidate of Pratylenchus brachyurus reduces its pathogenicity in soybean plants (Silenciamento de um candidato a efetor de Pratylenchus brachyurus reduz sua patogenicidade em plantas de soja) In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 51., 2019, Recife. Anais... Brasília, DF: SBF, 2019. p. 158.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 104. | | PASSIANOTTO, A. L. de L.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F.; ARIAS, C. A. A.; BELZILE, F.; ABDELNOOR, R. V. Seleção genômica ampla para o melhoramento de soja [Glycine max (L.) Merrill]. In: REUNIÃO DE PESQUISA DE SOJA, 34., 2014, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2014. p. 93-95.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 105. | | BINNECK, E.; NASCIMENTO, L. S.; ABDELNOOR, R. V.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; HUNGRIA, M. Using soybean gene express for gene expression profiling in soybean. In: WORLD SOYBEAN RESEARCH CONFERENCE, 9., 2013, Durban. [Proceedings...]. Durban: OPDT: OPOT, 2013. Abst. 249. 1 CD-ROM. WSRC.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 106. | | SILVA, E.; GRAÇA, J. P. da; PORTO, C.; PRADO, R. M. do; NUNES, E. de O.; MARCELINO-GUIMARÃES, F. C.; MEYER, M. C.; PILAU, E. J. Untargeted metabolomics analysis by UHPLC-MS/MS of soybean plant in a compatible response to Phakopsora pachyrhizi infection. Metabolites, v. 11, n. 3, 179, 2021. 15 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Soja; Embrapa Suínos e Aves. |
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| 107. | | POLIZEL-PODANOSQUI, A. M.; CARVALHO, M. C. C. G. de; ROCHA, C. S.; DARBEN, L. M.; LOPES-CAITAR, V. S.; AOYAOGI, L. N.; MARCELINO-GUIMARÃES, F. C. Temporal gene expression analysis of effector candidates of Phakopsora pachyrhizi across the infection cycle. In: INTERNATIONAL CONGRESS ON MOLECULAR PLANT-MICROBE INTERACTIONS, 16., 2014, Rhodes. [Abstracts...]. Atenas: International Society of Molecular Plant-Microbe Interactions, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 108. | | SILVA, A. G.; HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NOMURA, R. G.; DIAS, W. P.; LOPES, I. de O. N.; CARVALHO, M. C. C. G.; MARCELINO-GUIMARÃES, F. C. Análise funcional do gene At4g10250 em resposta à infecção por Meloidogyne javanica em Arabidopsis thaliana. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 13., 2018, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2018. p. 46-52.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 109. | | SANTOS, J. V. M. dos; FERREIRA, E. G. C.; PASSIANOTTO, A. L. L.; BRUMER, B. B.; SANTOS, A. B. dos; SOARES, R. M.; TORKAMANEH, D.; ARIAS, C. A. A.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development. BMC Genomics, v. 20, n. 798, 2019. 13 p.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Soja. |
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| 110. | | FERREIRA, E. G. C.; JANUARIO, N. C. G.; BROWSER, N. D.; GUERRA, W. D.; CAMPOS, H. D.; UTIAMADA, C. M.; SEIXAS, C. D. S.; SOARES, R. M.; MARCELINO-GUIMARÃES, F. C. Caracterização de isolados do complexo Diaporthe/Phomopsis obtidos de locais com suspeita de cancro-da-haste. In: CONGRESSO BRASILEIRO DE SOJA, 8., 2018, Goiânia. Inovação, tecnologias digitais e sustentabilidade da soja: anais. Brasília, DF: Embrapa, 2018. p. 584-586.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 111. | | DARBEN, L. M.; YOKOYAMA, A.; CASTANHO, F. M.; LOPES-CAITAR, V. S.; CARVALHO, M. C. da C. G. de; GODOY, C. V.; CARVALHO, S. de; GONELA, A.; MARCELINO-GUIMARÃES, F. C. Characterization of genetic diversity and pathogenicity of Phakopsora pachyrhizi mono-uredinial isolates collected in Brazil. European Journal of Plant Pathology, v. 156, p. 355-372, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Soja. |
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| 112. | | CASTANHO, F. M.; KUWAHARA, M. K.; FERNANDES, G. P.; DARBEN, L. M.; YOKOYAMA, A.; SILVA, D. C. G. da; ABDELNOOR, R. V.; MEYER, M. C.; MARCELINO-GUIMARÃES, F. C. Characterization of Phakopsora pachyrhizi races from a broad geographical and temporal collection. In: CONGRESSO BRASILEIRO DE SOJA, 9., 2022, Foz do iguaçu, PR. Desafios para a produtividade sustentável no Mercosul: resumos. Brasília, DF: Embrapa, 2022. Regina Maria Villas Bôas de Campos Leite, Adeney de Freitas Bueno, editores técnicos. resumo 105. p. 124.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 113. | | PARMEZAN, T. R.; RINCÃO, M. P.; SABINO, F. C.; BRITO JUNIOR, S. L. B.; BIRKETT, M.; PICKETT, J.; HOFFMANN-CAMPO, C. B.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Expression profile of genes involved in terpenoid biosynthesis under Phakopsora pachryrhizi infection. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls. Abstract... Abstract: 620.pdf.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 114. | | KUMA, K. M.; LOPES-CAITAR, V. S.; ROMERO, C. C. T.; DARBEN, L. M.; SILVA, S. M. H.; CARVALHO, M. C. C. G. de; KUWAHARA, M. K.; OLIVEIRA, M. C. N. de; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Functional characterization of soybean GmHsp17.6B and GmHsp22.4 genes in response to Meloidogyne javanica infection. In: WORKSHOP ON BIOTIC AND ABIOTIC STRESS TOLERANCE IN PLANTS, 2013, Ilhéus. The challenge for the 21st century: book of abstracts. [Brasília]: Embrapa: International Advanced Biology Consortium, 2013. p. 34.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 115. | | LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. BMC Genomics, v. 14, article 577, 2013. 17 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 116. | | ALEKCEVETCH, J. C.; PASSIANOTTO, A. L. de L.; FERREIRA, E. G. C.; SANTOS, A. B. dos; SILVA, D. C. G. da; DIAS, W. P.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean. Theoretical and Applied Genetics, v. 134, p. 777-792, 2021. Artigo de acesso aberto.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 117. | | SANTOS, J. V. M. dos; JOSHI, T.; KHAN, S. M.; LIU, Y.; WANG, J.; VUONG, T. D.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F. de; VALLIYODAN, B.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Genomic analysis of soybean accessions for allelic variations identification in brazilian germplasm. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 3 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 118. | | AOYAGI, L. N.; LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; DARBEN, L. M.; POLIZEL-PODANOSQUI, A.; KUWAHARA, M. K.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genomic and transcriptomic characterization of the transcription factor family R2R3-MYB in soybean and its involvement in the resistance responses to Phakopsora pachyrhizi. Plant Sciense, Limerick, v. 229, p. 32-42, Dec. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 119. | | NASCIMENTO, L. C.; VIDAL R. O.; MONDEGO, J. M. C.; COSTA, G. G. L.; JUNIOR, O. R.; RODRIGUES, F.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. Genotipagem de cultivares brasileiros de soja através da detecção de SNPs. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 15, res. 8.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 120. | | NASCIMENTO, L. C.; VIDAL R. O.; MONDEGO, J. M. C.; COSTA, G. G. L.; JUNIOR, O. R.; RODRIGUES, F.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. Genotipagem de cultivares brasileiros de soja através da detecção de SNPs. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 188 | |
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