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Registro Completo |
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
16/02/2016 |
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Data da última atualização: |
19/06/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
SANTOS, J. V. M. dos; VALLIYODAN, B.; JOSHI, T.; KHAN, S. M.; LIU, YANG.; WANG, J.; VUONG, T. D.; OLIVEIRA, M. F. de; MARCELINO-GUIMARÃES, F. C.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. |
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Afiliação: |
JOÃO VITOR MALDONADO DOS SANTOS, UEL; BABU VALLIYODAN, UNIVERSITY OF MISSOURI; TRUPTI JOSHI, UNIVERSITY OF MISSOURI; SAAD M. KHAN, UNIVERSITY OF MISSOURI; LIU, Y., UNIVERSITY OF MISSOURI; JUEXIN WANG, UNIVERSITY OF MISSOURI; TRI D. VUONG, UNIVERSITY OF MISSOURI; MARCELO FERNANDES DE OLIVEIRA, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO; DONG XU., UNIVERSITY OF MISSOURI; HENRY T. NGUYEN., UNIVERSITY OF MISSOURI; RICARDO VILELA ABDELNOOR, CNPSO. |
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Título: |
Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. |
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Ano de publicação: |
2016 |
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Fonte/Imprenta: |
BMC Genomics, v. 17, n. 110, 18 p., Feb. 2016. |
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ISSN: |
1471-2164 |
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DOI: |
10.1186/s12864-016-2431-x |
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Idioma: |
Inglês |
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Conteúdo: |
Soybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in this study can be used in marker-assisted selection programs to detect unique SNPs for cultivar fingerprinting. The results presented here suggest that despite the diversification of modern Brazilian cultivars, the soybean germplasm remains very narrow because of the large number of genome regions that exhibit low diversity. These results emphasize the need to introduce new alleles to increase the genetic diversity of the Brazilian germplasm. MenosSoybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in thi... Mostrar Tudo |
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Thesagro: |
Genoma; Soja; Variação genética; Variedade. |
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Thesaurus Nal: |
Cultivars; Genetic variation; High-throughput nucleotide sequencing; Soybeans. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/139105/1/Evaluation-of-genetic-variation-among-Brazilian-soybean-cultivars-through-genome-resequencing.pdf
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Marc: |
LEADER 02986naa a2200373 a 4500
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008 2016 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/s12864-016-2431-x$2DOI
100 1 $aSANTOS, J. V. M. dos
245 $aEvaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.$h[electronic resource]
260 $c2016
520 $aSoybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in this study can be used in marker-assisted selection programs to detect unique SNPs for cultivar fingerprinting. The results presented here suggest that despite the diversification of modern Brazilian cultivars, the soybean germplasm remains very narrow because of the large number of genome regions that exhibit low diversity. These results emphasize the need to introduce new alleles to increase the genetic diversity of the Brazilian germplasm.
650 $aCultivars
650 $aGenetic variation
650 $aHigh-throughput nucleotide sequencing
650 $aSoybeans
650 $aGenoma
650 $aSoja
650 $aVariação genética
650 $aVariedade
700 1 $aVALLIYODAN, B.
700 1 $aJOSHI, T.
700 1 $aKHAN, S. M.
700 1 $aLIU, YANG.
700 1 $aWANG, J.
700 1 $aVUONG, T. D.
700 1 $aOLIVEIRA, M. F. de
700 1 $aMARCELINO-GUIMARÃES, F. C.
700 1 $aXU, D.
700 1 $aNGUYEN, H. T.
700 1 $aABDELNOOR, R. V.
773 $tBMC Genomics$gv. 17, n. 110, 18 p., Feb. 2016.
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Registro original: |
Embrapa Soja (CNPSO) |
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Biblioteca |
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Tipo/Formato |
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URL |
Voltar
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| Registros recuperados : 188 | |
| 121. |  | PARMEZAN, T. R.; BRITO JUNIOR, S. L.; CARVALHO, K. de; AQUINO, M. de; BIRKETT, M.; PICKETT, J.; NUNES, E. de O.; ABDELNOOR, R. V.; HOFFMANN-CAMPO, C. B.; MARCELINO-GUIMARÃES, F. C. Transcriptional profile of genes involved in the production of terpenes and glyceollins in response to biotic stresses in soybean. Genetics and molecular biology, v. 43, p. 1-12, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 122. | | CARVALHO, M. C. C. G. de; NASCIMENTO, L. C.; POLIZEL-PODANOSQUI, A. M.; ROCHA, C. S.; DARBEN, L. M.; LOPES-CAITAR, V. S.; CARAZZOLLE, M. F.; OLIVEIRA, M. L. C. S.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. The transcriptome interactions between Phakopsora pachykopsora pachyrhizi-soybean. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 47.; SIMPÓSIO BRASILEIRO DE MOFO BRANCO, 2014, Londrina. Desafios futuros: anais. Londrina: SBF, 2014. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 123. | | CAMOLESE, A. C.; SILVA, D. C. G.; NOVAES, R. M. L.; CRUZ, A. S.; RINCÃO, M. P.; OLIVEIRA, A. M. A.; OLIVEIRA, M. F.; ABDELNOOR, R. V.; ARIAS, C. A. A.; MARCELINO-GUIMARÃES, F. C. Validação de SNPs associados à resistência a podridão radicular de Phytophthora. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 47.; SIMPÓSIO BRASILEIRO DE MOFO BRANCO, 2014, Londrina. Desafios futuros: anais. Londrina: SBF, 2014. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 124. | | SILVA, D. L. L. F.; BISSI, R. B.; FERREIRA, E. G. C.; CARDOSO, R.; LOPES-CAITAR, V. S.; BARROS, L. G.; SANTOS, A. B. dos; KUWAHARA, M. K.; SILVA, D. C. G. da; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Validação de SNPs para Seleção Assistida por Marcadores DO LOCUS rpp6 DE Resistência à Ferrugem Asiática da Soja. In: CONGRESSO BRASILEIRO DE MELHORAMENTO DE PLANTAS, 10., 2019, Águas de Lindóia. [Anais...]. [S. l.]: SBMP, 2019. e-book. p. 71.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 125. | | COSTA, R. P. S.; DE CARVALHO, K.; RINCÃO, M. P.; NOMURA, R. B. G.; AVELINO, B. B.; LOPES, I. de O. N.; ABDELNOOR, R. V.; DE CARVALHO, M. C. C. G.; MARCELINO-GUIMARÃES, F. C. Validation of a system for functional gene analysis in P. pachyrhizi by ectopic application of dsRNA. In: BRAZILIAN BIOTECHNOLOGY CONGRESS, 7.; BIOTECHNOLOGY IBERO-AMERICAN CONGRESS, 2., 2018, Brasília, DF. Proceedings... Brasília, DF: SBBiotec, 2018.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 126. | | HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NOMURA, R. B. G.; SERCERO, B. C.; SILVA, A. G. da; CARVALHO, M. C. da C. G. de; LOPES, I. de O. N.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. The soybean gene GmHsp22.4 is involved in the resistance response to Meloidogyne javanica in Arabidopsis thaliana. BMC plant biology, v. 20, p. 535, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 127. | | STOLF-MOREIRA, R.; MEDRI, M. E.; NEUMAIER, N.; LEMOS, N. G.; PIMENTA, J. A.; TOBITA, S.; BROGIN, R. L.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. C. N.; ABDELNOOR, R. V.; NEPOMUCENO, A. L. Soybean physiology and gene expression during drought. Genetics and Molecular Research, Ribeirão Preto, v. 9, n. 4, p. 1946-1956, 2010.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 128. | | NEUMAIER, N.; CARVALHO, J. F. C.; ROLLA-SANTOS, A. A. P.; ENGELS, C.; FARIAS, J. R. B.; FUGANTI-PAGLIARINI, R.; MARCELINO-GUIMARÃES, F. C.; MARIN, S. R. R.; MIZOI, J.; YAMAGUCHI-SHINOZAKI, K.; NEPOMUCENO, A. L. Testing dreb genetically modified soybean plants for drought tolerance in both greenhouse and field conditions. In: WORLD SOYBEAN RESEARCH CONFERENCE, 9., 2013, Durban. [Proceedings...]. Durban: OPDT: OPOT, 2013. Abst. 216. 1 CD-ROM. WSRC.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 129. | | LOPES-CAITAR, V. S.; NOMURA, R. B. G.; HISHINUMA-SILVA, S. M.; CARVALHO, M. C. da C. G. de; ABDELNOOR, R. V.; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C. Time Course RNA-seq Reveals Soybean Responses against Root-Lesion Nematode and Resistance Players. Plants, v. 11, 2983, 2022. 24 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 4 |
| Biblioteca(s): Embrapa Soja. |
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| 130. | | DARBEN, L. M.; YOKOYAMA, A.; PARMEZAN, T. R.; KUWAHARA, M. K.; CARVALHO, M. C. C. G. de; GONELA, A.; SOARES, R. M.; ALMEIDA, A. M. R.; GODOY, C. V.; MARCELINO-GUIMARÃES, F. C. Evaluation of virulence of Phakopsora pachyrhizi monourediniais isolates collected in Brazil. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 47.; SIMPÓSIO BRASILEIRO DE MOFO BRANCO, 2014, Londrina. Desafios futuros: anais. Londrina: SBF, 2014. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 131. | | FREITAS-VANZO, A. T. de; SILVA, C. de C. da; NOVAES, T. G. de; WALZ, D. M.; MARCELINO-GUIMARÃES, F. C.; KUWAHARA, M. K.; MOLINA, R. de O.; LEITE JUNIOR, R. P. Evaluation of disease severity caused by Bean golden mosaic virus in different bean cultivars. Canadian Journal of Plant Pathology, v. 43, N. 1, p. 172-178, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 132. | | SANTOS, J. V. M. dos; VALLIYODAN, B.; JOSHI, T.; KHAN, S. M.; LIU, YANG.; WANG, J.; VUONG, T. D.; OLIVEIRA, M. F. de; MARCELINO-GUIMARÃES, F. C.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. BMC Genomics, v. 17, n. 110, 18 p., Feb. 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 133. | | PARMEZAN, T. R.; RINCÃO, M. P.; SABINO, F. C.; BRITO JUNIOR, S. L. B.; BIRKETT, M.; PICKETT, J.; HOFFMANN-CAMPO, C. B.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Expression profile of genes involved in terpenoid biosynthesis under Phakopsora pachryrhizi infection. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls. Abstract... Abstract: 620.pdf.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 134. | | AOYAGI, L. N.; LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; DARBEN, L. M.; POLIZEL-PODANOSQUI, A.; KUWAHARA, M. K.; NEPOMUCENO, A. L.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genomic and transcriptomic characterization of the transcription factor family R2R3-MYB in soybean and its involvement in the resistance responses to Phakopsora pachyrhizi. Plant Sciense, Limerick, v. 229, p. 32-42, Dec. 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 135. | | NASCIMENTO, L. C.; VIDAL R. O.; MONDEGO, J. M. C.; COSTA, G. G. L.; JUNIOR, O. R.; RODRIGUES, F.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. Genotipagem de cultivares brasileiros de soja através da detecção de SNPs. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 15, res. 8.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 136. | | NASCIMENTO, L. C.; VIDAL R. O.; MONDEGO, J. M. C.; COSTA, G. G. L.; JUNIOR, O. R.; RODRIGUES, F.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. Genotipagem de cultivares brasileiros de soja através da detecção de SNPs. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| 138. | | LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. BMC Genomics, v. 14, article 577, 2013. 17 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 139. | | ALEKCEVETCH, J. C.; PASSIANOTTO, A. L. de L.; FERREIRA, E. G. C.; SANTOS, A. B. dos; SILVA, D. C. G. da; DIAS, W. P.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean. Theoretical and Applied Genetics, v. 134, p. 777-792, 2021. Artigo de acesso aberto.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
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| 140. | | SANTOS, J. V. M. dos; JOSHI, T.; KHAN, S. M.; LIU, Y.; WANG, J.; VUONG, T. D.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F. de; VALLIYODAN, B.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Genomic analysis of soybean accessions for allelic variations identification in brazilian germplasm. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 3 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 188 | |
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