| |
|
|
|
Registro Completo |
|
Biblioteca(s): |
Embrapa Soja. |
|
Data corrente: |
16/02/2016 |
|
Data da última atualização: |
19/06/2017 |
|
Tipo da produção científica: |
Artigo em Periódico Indexado |
|
Autoria: |
SANTOS, J. V. M. dos; VALLIYODAN, B.; JOSHI, T.; KHAN, S. M.; LIU, YANG.; WANG, J.; VUONG, T. D.; OLIVEIRA, M. F. de; MARCELINO-GUIMARÃES, F. C.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. |
|
Afiliação: |
JOÃO VITOR MALDONADO DOS SANTOS, UEL; BABU VALLIYODAN, UNIVERSITY OF MISSOURI; TRUPTI JOSHI, UNIVERSITY OF MISSOURI; SAAD M. KHAN, UNIVERSITY OF MISSOURI; LIU, Y., UNIVERSITY OF MISSOURI; JUEXIN WANG, UNIVERSITY OF MISSOURI; TRI D. VUONG, UNIVERSITY OF MISSOURI; MARCELO FERNANDES DE OLIVEIRA, CNPSO; FRANCISMAR CORREA MARCELINO GUIMARA, CNPSO; DONG XU., UNIVERSITY OF MISSOURI; HENRY T. NGUYEN., UNIVERSITY OF MISSOURI; RICARDO VILELA ABDELNOOR, CNPSO. |
|
Título: |
Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. |
|
Ano de publicação: |
2016 |
|
Fonte/Imprenta: |
BMC Genomics, v. 17, n. 110, 18 p., Feb. 2016. |
|
ISSN: |
1471-2164 |
|
DOI: |
10.1186/s12864-016-2431-x |
|
Idioma: |
Inglês |
|
Conteúdo: |
Soybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in this study can be used in marker-assisted selection programs to detect unique SNPs for cultivar fingerprinting. The results presented here suggest that despite the diversification of modern Brazilian cultivars, the soybean germplasm remains very narrow because of the large number of genome regions that exhibit low diversity. These results emphasize the need to introduce new alleles to increase the genetic diversity of the Brazilian germplasm. MenosSoybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in thi... Mostrar Tudo |
|
Thesagro: |
Genoma; Soja; Variação genética; Variedade. |
|
Thesaurus Nal: |
Cultivars; Genetic variation; High-throughput nucleotide sequencing; Soybeans. |
|
Categoria do assunto: |
G Melhoramento Genético |
|
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/139105/1/Evaluation-of-genetic-variation-among-Brazilian-soybean-cultivars-through-genome-resequencing.pdf
|
|
Marc: |
LEADER 02986naa a2200373 a 4500
001 2037089
005 2017-06-19
008 2016 bl uuuu u00u1 u #d
022 $a1471-2164
024 7 $a10.1186/s12864-016-2431-x$2DOI
100 1 $aSANTOS, J. V. M. dos
245 $aEvaluation of genetic variation among Brazilian soybean cultivars through genome resequencing.$h[electronic resource]
260 $c2016
520 $aSoybean [Glycine max (L.) Merrill] is one of the most important legumes cultivated worldwide, and Brazil is one of the main producers of this crop. Since the sequencing of its reference genome, interest in structural and allelic variations of cultivated and wild soybean germplasm has grown. To investigate the genetics of the Brazilian soybean germplasm, we selected soybean cultivars based on the year of commercialization, geographical region and maturity group and resequenced their genomes. We resequenced the genomes of 28 Brazilian soybean cultivars with an average genome coverage of 14.8X. A total of 5,835,185 single nucleotide polymorphisms (SNPs) and 1,329,844 InDels were identified across the 20 soybean chromosomes, with 541,762 SNPs, 98,922 InDels and 1,093 CNVs that were exclusive to the 28 Brazilian cultivars. In addition, 668 allelic variations of 327 genes were shared among all of the Brazilian cultivars, including genes related to DNA-dependent transcription-elongation, photosynthesis, ATP synthesis-coupled electron transport, cellular respiration, and precursors of metabolite generation and energy. A very homogeneous structure was also observed for the Brazilian soybean germplasm, and we observed 41 regions putatively influenced by positive selection. Finally, we detected 3,880 regions with copy-number variations (CNVs) that could help to explain the divergence among the accessions evaluated. The large number of allelic and structural variations identified in this study can be used in marker-assisted selection programs to detect unique SNPs for cultivar fingerprinting. The results presented here suggest that despite the diversification of modern Brazilian cultivars, the soybean germplasm remains very narrow because of the large number of genome regions that exhibit low diversity. These results emphasize the need to introduce new alleles to increase the genetic diversity of the Brazilian germplasm.
650 $aCultivars
650 $aGenetic variation
650 $aHigh-throughput nucleotide sequencing
650 $aSoybeans
650 $aGenoma
650 $aSoja
650 $aVariação genética
650 $aVariedade
700 1 $aVALLIYODAN, B.
700 1 $aJOSHI, T.
700 1 $aKHAN, S. M.
700 1 $aLIU, YANG.
700 1 $aWANG, J.
700 1 $aVUONG, T. D.
700 1 $aOLIVEIRA, M. F. de
700 1 $aMARCELINO-GUIMARÃES, F. C.
700 1 $aXU, D.
700 1 $aNGUYEN, H. T.
700 1 $aABDELNOOR, R. V.
773 $tBMC Genomics$gv. 17, n. 110, 18 p., Feb. 2016.
Download
Esconder MarcMostrar Marc Completo |
|
Registro original: |
Embrapa Soja (CNPSO) |
|
|
Biblioteca |
ID |
Origem |
Tipo/Formato |
Classificação |
Cutter |
Registro |
Volume |
Status |
URL |
Voltar
|
|
|
| Registros recuperados : 188 | |
| 101. |  | RECHENMACHER, C.; KAPPAUN, K.; WIEBKE-STROHM, B.; BUSATTO, L. A. de O.; CORSO, M. C. M.; MARCELINO-GUIMARÃES, F. C.; CARLINI, C. R.; BODANESE-ZANETTINI, M. H. Soyuretox, a new peptide to confer partial resistance to soybean root-knot nematodes. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls. Abstract... Abstract: 664.pdf.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|    |
| 102. | | POLIZEL-PODANOSQUI, A. M.; CARVALHO, M. C. C. G. de; ROCHA, C. S.; DARBEN, L. M.; LOPES-CAITAR, V. S.; AOYAOGI, L. N.; MARCELINO-GUIMARÃES, F. C. Temporal gene expression analysis of effector candidates of Phakopsora pachyrhizi across the infection cycle. In: INTERNATIONAL CONGRESS ON MOLECULAR PLANT-MICROBE INTERACTIONS, 16., 2014, Rhodes. [Abstracts...]. Atenas: International Society of Molecular Plant-Microbe Interactions, 2014.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 103. | | SILVA, E.; GRAÇA, J. P. da; PORTO, C.; PRADO, R. M. do; NUNES, E. de O.; MARCELINO-GUIMARÃES, F. C.; MEYER, M. C.; PILAU, E. J. Untargeted metabolomics analysis by UHPLC-MS/MS of soybean plant in a compatible response to Phakopsora pachyrhizi infection. Metabolites, v. 11, n. 3, 179, 2021. 15 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 4 |
| Biblioteca(s): Embrapa Soja; Embrapa Suínos e Aves. |
| |
| 104. | | BINNECK, E.; NASCIMENTO, L. S.; ABDELNOOR, R. V.; ALMEIDA, A. M. R.; NEPOMUCENO, A. L.; MARCELINO-GUIMARÃES, F. C.; HUNGRIA, M. Using soybean gene express for gene expression profiling in soybean. In: WORLD SOYBEAN RESEARCH CONFERENCE, 9., 2013, Durban. [Proceedings...]. Durban: OPDT: OPOT, 2013. Abst. 249. 1 CD-ROM. WSRC.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 105. | | RINCÃO, M. P.; CATELLI, L. L.; MARIN, S. R. R.; SOARES, R. M.; ARIAS, C. A. A.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V. Validação de marcadores moleculares microssatélites ligados ao gene Rps1-k de resistência à podridão radicular de fitóftora em soja. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: resumos. Brasília, DF: Embrapa, 2012. p. 17, res. 11.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 106. | | RINCÃO, M. P.; CATELLI, L. L.; MARIN, S. R. R.; SOARES, R. M.; ARIAS, C. A. A.; MARCELINO-GUIMARÃES, F. C.; ABDELNOOR, R. V. Validação de marcadores moleculares microssatélites ligados ao gene Rps1-k de resistência à podridão radicular de fitóftora em soja. In: CONGRESSO BRASILEIRO DE SOJA, 6., 2012, Cuiabá. Soja: integração nacional e desenvolvimento sustentável: anais. Brasília, DF: Embrapa, 2012. 4 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 107. | | TROVATI, B.; FERREIRA, N.; SANTOS, E. A. dos; CASTANHO, F. M.; KUWAHARA, M. K.; MEYER, M. C.; MARCELINO-GUIMARÃES, F. C. Variabilidade patôgenica de Phakopsora pachyrhizi nas principais regiões produtoras de soja no brasil nas safras 2018-2021. In: CONGRESSO BRASILEIRO DE SOJA, 9., 2022, Foz do iguaçu, PR. Desafios para a produtividade sustentável no Mercosul: resumos. Brasília, DF: Embrapa, 2022. Regina Maria Villas Bôas de Campos Leite, Adeney de Freitas Bueno, editores técnicos. resumo 94. p. 113.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 108. | | SANTOS, J. V. M. dos; FERREIRA, E. G. C.; PASSIANOTTO, A. L. L.; BRUMER, B. B.; SANTOS, A. B. dos; SOARES, R. M.; TORKAMANEH, D.; ARIAS, C. A. A.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Association mapping of a locus that confers southern stem canker resistance in soybean and SNP marker development. BMC Genomics, v. 20, n. 798, 2019. 13 p.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Soja. |
| |
| 109. | | SILVA, A. G.; HISHINUMA-SILVA, S. M.; LOPES-CAITAR, V. S.; NOMURA, R. G.; DIAS, W. P.; LOPES, I. de O. N.; CARVALHO, M. C. C. G.; MARCELINO-GUIMARÃES, F. C. Análise funcional do gene At4g10250 em resposta à infecção por Meloidogyne javanica em Arabidopsis thaliana. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 13., 2018, Londrina. Resumos expandidos... Londrina: Embrapa Soja, 2018. p. 46-52.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 110. | | SANTOS, J. V. M.; JOSHI, T.; KHAN, S. M.; LIU, Y.; WANG, J.; VUONG, T. D.; MARCELINO-GUIMARÃES, F. C.; OLIVEIRA, M. F. de; VALLIYODAN, B.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Copy-number variations reveal divergence among brazilian soybean cultivars. In: CONGRESSO BRASILEIRO DE SOJA, 7.; MERCOSOJA, 2015, Florianópolis. Tecnologia e mercado global: perspectivas para soja: anais. Londrina: Embrapa Soja, 2015. 3 p. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
|  |
| 111. | | DARBEN, L. M.; YOKOYAMA, A.; CASTANHO, F. M.; LOPES-CAITAR, V. S.; CARVALHO, M. C. da C. G. de; GODOY, C. V.; CARVALHO, S. de; GONELA, A.; MARCELINO-GUIMARÃES, F. C. Characterization of genetic diversity and pathogenicity of Phakopsora pachyrhizi mono-uredinial isolates collected in Brazil. European Journal of Plant Pathology, v. 156, p. 355-372, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 2 |
| Biblioteca(s): Embrapa Soja. |
| |
| 112. | | CASTANHO, F. M.; KUWAHARA, M. K.; FERNANDES, G. P.; DARBEN, L. M.; YOKOYAMA, A.; SILVA, D. C. G. da; ABDELNOOR, R. V.; MEYER, M. C.; MARCELINO-GUIMARÃES, F. C. Characterization of Phakopsora pachyrhizi races from a broad geographical and temporal collection. In: CONGRESSO BRASILEIRO DE SOJA, 9., 2022, Foz do iguaçu, PR. Desafios para a produtividade sustentável no Mercosul: resumos. Brasília, DF: Embrapa, 2022. Regina Maria Villas Bôas de Campos Leite, Adeney de Freitas Bueno, editores técnicos. resumo 105. p. 124.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 113. | | FERREIRA, E. G. C.; JANUARIO, N. C. G.; BROWSER, N. D.; GUERRA, W. D.; CAMPOS, H. D.; UTIAMADA, C. M.; SEIXAS, C. D. S.; SOARES, R. M.; MARCELINO-GUIMARÃES, F. C. Caracterização de isolados do complexo Diaporthe/Phomopsis obtidos de locais com suspeita de cancro-da-haste. In: CONGRESSO BRASILEIRO DE SOJA, 8., 2018, Goiânia. Inovação, tecnologias digitais e sustentabilidade da soja: anais. Brasília, DF: Embrapa, 2018. p. 584-586.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 114. | | RECHENMACHER, C.; WIEBKE-STROHM, B.; OLIVEIRA-BUSATTO, L. A. de; WEBER, R. L. M.; CORSO, M. C. M.; LOPES-CAITAR, V. S.; SILVA, S. M. H; DIAS, W. P.; MARCELINO-GUIMARÃES, F. C.; CARLINI, C. R.; BODANESE-ZANETTINI, M. H. Endogenous soybean peptide overexpression: an alternative to protect plants against root-knot nematodes Biotechnology Research & Innovation, v. 3, p. 10-18, 2020.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 5 |
| Biblioteca(s): Embrapa Soja. |
| |
| 115. | | PARMEZAN, T. R.; RINCÃO, M. P.; SABINO, F. C.; BRITO JUNIOR, S. L. B.; BIRKETT, M.; PICKETT, J.; HOFFMANN-CAMPO, C. B.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Expression profile of genes involved in terpenoid biosynthesis under Phakopsora pachryrhizi infection. In: INTERNATIONAL CONGRESS OF PLANT MOLECULAR BIOLOGY, 11., 2015, Iguassu Falls. Abstract... Abstract: 620.pdf.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 116. | | FREITAS-VANZO, A. T. de; SILVA, C. de C. da; NOVAES, T. G. de; WALZ, D. M.; MARCELINO-GUIMARÃES, F. C.; KUWAHARA, M. K.; MOLINA, R. de O.; LEITE JUNIOR, R. P. Evaluation of disease severity caused by Bean golden mosaic virus in different bean cultivars. Canadian Journal of Plant Pathology, v. 43, N. 1, p. 172-178, 2021.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Soja. |
| |
| 117. | | SANTOS, J. V. M. dos; VALLIYODAN, B.; JOSHI, T.; KHAN, S. M.; LIU, YANG.; WANG, J.; VUONG, T. D.; OLIVEIRA, M. F. de; MARCELINO-GUIMARÃES, F. C.; XU, D.; NGUYEN, H. T.; ABDELNOOR, R. V. Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing. BMC Genomics, v. 17, n. 110, 18 p., Feb. 2016.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
| |
| 118. | | DARBEN, L. M.; YOKOYAMA, A.; PARMEZAN, T. R.; KUWAHARA, M. K.; CARVALHO, M. C. C. G. de; GONELA, A.; SOARES, R. M.; ALMEIDA, A. M. R.; GODOY, C. V.; MARCELINO-GUIMARÃES, F. C. Evaluation of virulence of Phakopsora pachyrhizi monourediniais isolates collected in Brazil. In: CONGRESSO BRASILEIRO DE FITOPATOLOGIA, 47.; SIMPÓSIO BRASILEIRO DE MOFO BRANCO, 2014, Londrina. Desafios futuros: anais. Londrina: SBF, 2014. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Soja. |
| |
| 119. | | LOPES-CAITAR, V. S.; CARVALHO, M. C. C. G. de; LUANA M. DARBEN; KUWAHARA, M. K.; NEPOMUCENO, A. L.; DIAS, W. P.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide analysis of the Hsp20 gene family in soybean: comprehensive sequence, genomic organization and expression profile analysis under abiotic and biotic stresses. BMC Genomics, v. 14, article 577, 2013. 17 p.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
| |
| 120. | | ALEKCEVETCH, J. C.; PASSIANOTTO, A. L. de L.; FERREIRA, E. G. C.; SANTOS, A. B. dos; SILVA, D. C. G. da; DIAS, W. P.; BELZILE, F.; ABDELNOOR, R. V.; MARCELINO-GUIMARÃES, F. C. Genome-wide association study for resistance to the Meloidogyne javanica causing root-knot nematode in soybean. Theoretical and Applied Genetics, v. 134, p. 777-792, 2021. Artigo de acesso aberto.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Soja. |
| |
| Registros recuperados : 188 | |
|
| Nenhum registro encontrado para a expressão de busca informada. |
|
|
