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Registro Completo |
Biblioteca(s): |
Embrapa Agroenergia. |
Data corrente: |
15/09/2021 |
Data da última atualização: |
15/09/2021 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
MENDES, I. V.; GARCIA, M. B.; BITENCOURT, A. C. A.; SANTANA, R. H.; LINS, P. de C.; SILVEIRA, R.; SIMMONS, B. A.; GLADDEN, J. M.; KRUGER, R. H.; QUIRINO, B. F. |
Afiliação: |
ISIS VIANA MENDES, Universidade de Brasília; MARIANA BOTELHO GARCIA, Universidade Católica de Brasília; ANA CAROLINA ARAUJO BITENCOURT, Universidade de Brasília; RENATA HENRIQUE SANTANA, Instituto Federal de Brasília; PHILIPPE DE CASTRO LINS, Universidade de Brasília; RAFAELLA SILVEIRA, Universidade de Brasília; BLAKE A. SIMMONS, Joint BioEnergy Institute; JOHN M. GLADDEN, Joint BioEnergy Institute; RICARDO HENRIQUE KRUGER, Universidade de Brasília; BETANIA FERRAZ QUIRINO, CNPAE. |
Título: |
Bacterial diversity dynamics in microbial consortia selected for lignin utilization. |
Ano de publicação: |
2021 |
Fonte/Imprenta: |
PLoS ONE, v. 16, n. 9, e0255083, 2021. |
Descrição Física: |
PDF: il. color. |
DOI: |
https://doi.org/10.1371/journal.pone.0255083 |
Idioma: |
Inglês |
Conteúdo: |
Abstract:Lignin is nature?s largest source of phenolic compounds. Its recalcitrance to enzymatic conversion is still a limiting step to increase the value of lignin. Although bacteria are able to degrade lignin in nature, most studies have focused on lignin degradation by fungi. To understand which bacteria are able to use lignin as the sole carbon source, natural selection over time was used to obtain enriched microbial consortia over a 12-week period. The source of microorganisms to establish these microbial consortia were commercial and backyard compost soils. Cultivation occurred at two different temperatures, 30°C and 37°C, in defined culture media containing either Kraft lignin or alkaline-extracted lignin as carbon source. iTag DNA sequencing of bacterial 16S rDNA gene was performed for each of the consortia at six timepoints (passages). The initial bacterial richness and diversity of backyard compost soil consortia was greater than that of commercial soil consortia, and both parameters decreased after the enrichment protocol, corroborating that selection was occurring. Bacterial consortia composition tended to stabilize from the fourth passage on. After the enrichment protocol, Firmicutes phylum bacteria were predominant when lignin extracted by alkaline method was used as a carbon source, whereas Proteobacteria were predominant when Kraft lignin was used. Bray-Curtis dissimilarity calculations at genus level, visualized using NMDS plots, showed that the type of lignin used as a carbon source contributed more to differentiate the bacterial consortia than the variable temperature. The main known bacterial genera selected to use lignin as a carbon source were Altererythrobacter, Aminobacter, Bacillus, Burkholderia, Lysinibacillus, Microvirga, Mycobacterium, Ochrobactrum, Paenibacillus, Pseudomonas, Pseudoxanthomonas, Rhizobiales and Sphingobium. These selected bacterial genera can be of particular interest for studying lignin degradation and utilization, as well as for lignin-related biotechnology applications. MenosAbstract:Lignin is nature?s largest source of phenolic compounds. Its recalcitrance to enzymatic conversion is still a limiting step to increase the value of lignin. Although bacteria are able to degrade lignin in nature, most studies have focused on lignin degradation by fungi. To understand which bacteria are able to use lignin as the sole carbon source, natural selection over time was used to obtain enriched microbial consortia over a 12-week period. The source of microorganisms to establish these microbial consortia were commercial and backyard compost soils. Cultivation occurred at two different temperatures, 30°C and 37°C, in defined culture media containing either Kraft lignin or alkaline-extracted lignin as carbon source. iTag DNA sequencing of bacterial 16S rDNA gene was performed for each of the consortia at six timepoints (passages). The initial bacterial richness and diversity of backyard compost soil consortia was greater than that of commercial soil consortia, and both parameters decreased after the enrichment protocol, corroborating that selection was occurring. Bacterial consortia composition tended to stabilize from the fourth passage on. After the enrichment protocol, Firmicutes phylum bacteria were predominant when lignin extracted by alkaline method was used as a carbon source, whereas Proteobacteria were predominant when Kraft lignin was used. Bray-Curtis dissimilarity calculations at genus level, visualized using NMDS plots, showed that the type of lign... Mostrar Tudo |
Thesagro: |
Biotecnologia; Carbono; Composto Fenólico; Lignina. |
Thesaurus Nal: |
Application technology; Biotechnology; Carbon; Degradation; Energy conversion; Lignin; Phenolic compounds. |
Categoria do assunto: |
X Pesquisa, Tecnologia e Engenharia |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/226045/1/Bacterial-diversity-dynamics-in-microbial-2021.pdf
|
Marc: |
LEADER 03127naa a2200385 a 4500 001 2134421 005 2021-09-15 008 2021 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1371/journal.pone.0255083$2DOI 100 1 $aMENDES, I. V. 245 $aBacterial diversity dynamics in microbial consortia selected for lignin utilization.$h[electronic resource] 260 $c2021 300 $cPDF: il. color. 520 $aAbstract:Lignin is nature?s largest source of phenolic compounds. Its recalcitrance to enzymatic conversion is still a limiting step to increase the value of lignin. Although bacteria are able to degrade lignin in nature, most studies have focused on lignin degradation by fungi. To understand which bacteria are able to use lignin as the sole carbon source, natural selection over time was used to obtain enriched microbial consortia over a 12-week period. The source of microorganisms to establish these microbial consortia were commercial and backyard compost soils. Cultivation occurred at two different temperatures, 30°C and 37°C, in defined culture media containing either Kraft lignin or alkaline-extracted lignin as carbon source. iTag DNA sequencing of bacterial 16S rDNA gene was performed for each of the consortia at six timepoints (passages). The initial bacterial richness and diversity of backyard compost soil consortia was greater than that of commercial soil consortia, and both parameters decreased after the enrichment protocol, corroborating that selection was occurring. Bacterial consortia composition tended to stabilize from the fourth passage on. After the enrichment protocol, Firmicutes phylum bacteria were predominant when lignin extracted by alkaline method was used as a carbon source, whereas Proteobacteria were predominant when Kraft lignin was used. Bray-Curtis dissimilarity calculations at genus level, visualized using NMDS plots, showed that the type of lignin used as a carbon source contributed more to differentiate the bacterial consortia than the variable temperature. The main known bacterial genera selected to use lignin as a carbon source were Altererythrobacter, Aminobacter, Bacillus, Burkholderia, Lysinibacillus, Microvirga, Mycobacterium, Ochrobactrum, Paenibacillus, Pseudomonas, Pseudoxanthomonas, Rhizobiales and Sphingobium. These selected bacterial genera can be of particular interest for studying lignin degradation and utilization, as well as for lignin-related biotechnology applications. 650 $aApplication technology 650 $aBiotechnology 650 $aCarbon 650 $aDegradation 650 $aEnergy conversion 650 $aLignin 650 $aPhenolic compounds 650 $aBiotecnologia 650 $aCarbono 650 $aComposto Fenólico 650 $aLignina 700 1 $aGARCIA, M. B. 700 1 $aBITENCOURT, A. C. A. 700 1 $aSANTANA, R. H. 700 1 $aLINS, P. de C. 700 1 $aSILVEIRA, R. 700 1 $aSIMMONS, B. A. 700 1 $aGLADDEN, J. M. 700 1 $aKRUGER, R. H. 700 1 $aQUIRINO, B. F. 773 $tPLoS ONE$gv. 16, n. 9, e0255083, 2021.
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Registro original: |
Embrapa Agroenergia (CNPAE) |
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Registros recuperados : 64 | |
41. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | ASSIS, O. Y. de; SOUTO, B. de M.; DOMENECH, D.; CARVALHO B. J.; KRUGER, R. H.; KYAM, C. M.; CHAVES B. C.; QUIRINO, B. F. Culture-independent assessment of the microbial diversity in the sugarcane-ethanol production process. Hechos Microbiológicos, v. 5, n. 2, suplemento 2, p. 87, 2014. p. 134. Trabalho apresentado no XXII Congresso Latinoamericano de Microbiología - ALAM 2014 e 4 Congresso Colombiano de Microbiología - 4 CCM 2014.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Acesso ao objeto digital](/consulta/web/img/pdf.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
42. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | SILVA, M. R. S. S. da; BRESOLIN, J. D.; KRUGER, R. H.; BUSTAMANTE, M. M. da C.; REIS JÚNIOR, F. B. dos. Efeito do fogo sobre a comunidade bacteriana de solos de Cerrado. In: CONGRESSO BRASILEIRO DE MICROBIOLOGIA, 23., 2005, Santos, SP. Resumos. Santos: Sociedade Brasileira de Microbiologia, 2005. 1 CD-ROM.Biblioteca(s): Embrapa Cerrados. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
43. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CUNHA, I. S.; MÁXIMO, R. M.; CAMPOS, P. F.; NORONHA, E. F.; BOMFIM, M. A. D.; KRÜGER, R. H.; QUIRINO, B. F. Construção e screening de uma biblioteca metagenômica de rúmen de caprinos. In: WORKSHOP EM CIÊNCIAS GENÔMICAS E BIOTECNOLOGIA, 1., 2009, Brasília, DF. [Anais...]. Brasília, DF: [UCB], 2009. Não paginadoTipo: Artigo em Anais de Congresso / Nota Técnica |
Biblioteca(s): Embrapa Agroenergia. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
44. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BERGMANN, J. C.; COSTA, O. Y. A.; RAMOS, N. S. P. L.; FURTADO, R. S.; KRUGER, R. H.; QUIRINO, B. F. Construction of metagenomic libraries with large inserts of DNA from the Amazonian soil microbiota and screening for enzymes with biotechnological potential. In: CONGRESSO BRASILEIRO DE BIOTECNOLOGIA, 3., 2010, Fortaleza. Programas e resumos... [Brasília, DF]: Sociedade Brasileira de Biotecnologia, 2010. p. 64-65.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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45. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | ARAUJO, A. C. B.; CARVALHO, L. S.; TUPINAMBA, D. D.; ALMEIDA, J. M.; FAVARO, L. C. de L.; KRUGER, R. H.; QUIRINO, B. F. Isolamento e Caracterização de Microrganismos Isolados a Partir de Solo de Cerrado para a Produção de Etanol de Segunda Geração. In: CONGRESSO LATINO AMERICANO DE MICROBIOLOGIA, 21., 2012, Santos, SP. [Anais...]. São Paulo: Sociedade Brasileira de Microbiologia: Asociación Latinoamericana de Microbiologia, 2012.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Acesso ao objeto digital](/consulta/web/img/pdf.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
46. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CUNHA, I. S.; FREIRE, M. S.; LEMOS, T. O.; BARRETO, C. C.; QUIRINO, B. F.; FRANCO, O. L.; KRUGER, R. H. Prokaryotic diversity present in the semi-arid goat rumen and its biotechnological potential. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE BIOQUÍMICA E BIOLOGIA MOLECULAR – SBBq, 39.; LATIN AMERICAN SYMPOSIUM ON THE MOLECULAR MECHANISMS OF SKELETAL MINERALIZATION, 1., 2010, Foz do Iguaçu, PR. Resumos... São Paulo: SBBq, 2010. Não paginado. Disponível em: < http://www.sbbq.org.br/2010/cdrom/busca.htm?query=quirino%2C+b.+f. >. Acesso em: 16 ago. 2010.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
47. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BERGMANN, J. C.; BOARI, A. de J.; KRUGER, R. H.; TAVARES P.; TOGAWA, R. C.; SILVA JUNIOR, O. B. da; PAPPAS JUNIOR, G. J.; QUIRINO, B. F. New strategies to look at old problems: fatal yellowing in palm oil tree. In: BRAZILIAN BIOENERGY SCIENCE AND TECHNOLOGY CONFERENCE - BBEST, 1., 2011, Campos do Jordão, SP. [Anais...]. São Paulo: FAPESP, 2011. Não paginado.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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48. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BERGMANN, J. C.; BOARI, A. de J.; KRUGER, R. H.; TAVARES, P.; TOGAWA, R. C.; SILVA JUNIOR, O. B. da; PAPPAS JUNIOR, G. J.; QUIRINO, B. F. New strategies to look at old problems: fatal yellowing in palm oil tree. In: BRAZILIAN BIOENERGY SCIENCE AND TECHNOLOGY CONFERENCE - BBEST, 1., 2011, Campos do Jordão, SP. [Anais...]. São Paulo: FAPESP, 2011. Não paginado.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia; Embrapa Amazônia Oriental. |
| ![Visualizar detalhes do registro](/consulta/web/img/visualizar.png) ![Acesso ao objeto digital](/consulta/web/img/pdf.png) ![Imprime registro no formato completo](/consulta/web/img/print.png) |
50. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | QUIRINO, B. F.; BARRETO, C.; COSTA, O. Y.; SOUTO, B. de M.; TUPINAMBA, D.; BERGMANN, J. C.; KRUGER, R. H.; KYAW, C. Microbial diversity in different stages of the ethanol production process using culture-independent techniques. In: SYMPOSIUM ON BIOTECHNOLOGY FOR FUELS AND CHEMICALS, 37., 2015, San Diego, California. [Resumos ...] Fairfax: Society for Industrial Microbiology and Biotechnology, 2015. Resumo T45Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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51. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CATÃO, E.; LOPES, F. A. C.; ARAÚJO, J. F.; CASTRO, A. C. de; BARRETO, C. C.; BUSTAMANTE, M.; QUIRINO, B. F.; KRUGER, R. H. Soil Acidobacterial 16S rRNA Gene Sequences Reveal Subgroup Level Differences between Savanna-Like Cerrado and Atlantic Forest Brazilian Biomes. International Journal of Microbiology, article 156341, 2014.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia. |
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52. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | BERGMANN, J. C.; COSTA, M. M. do C.; JUNIOR, P. G. J.; BARRETO, C. C.; KRUGER, R. H.; QUIRINO, B. F. Soil bacterial community structure associated with oil palm (Elaeis guineensis) fatal yellowing disease. In: SYMPOSIUM ON BIOTECHNOLOGY FOR FUELS AND CHEMICALS, 36., 2014, Flórida. Abstracts... Fairfax: Society for Industrial Microbiology and Biotechnology, 2014.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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53. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | GUIMARÃES, H. I. P.; SANTANA, R. H.; SILVEIRA, R.; PINTO, O. H. B.; QUIRINO, B. F.; BARRETO, C. C.; BUSTAMANTE, M. M. da C.; KRÜGER, R. H. Seasonal Variations in Soil Microbiota Profile of Termite (Syntermes wheeleri) Mounds in the Brazilian Tropical Savanna. Microorganisms, v. 8, 1482, 2020. 8 Special Issue: Soil Microbiome: Biotic and Abiotic Interactions.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia. |
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54. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | GOMES, P. H. M.; CÂNDIDO, E. S.; AQUINO, E. N.; NORONHA, E. F.; FRANCO, O. L.; FONTES, W.; KRÜGER, R. H.; QUIRINO, B. F. Xanthomonas campestris pv. campestris secretome toward susceptible and resistant Arabidopsis thaliana ecotypes. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 28., 2008; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 12., 2008; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 10., 2008; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 7., 2008, Londrina. FertBio 2008: desafios para o uso do solo com eficiência e qualidade ambiental: anais. Londrina: Embrapa Soja: SBCS: IAPAR: UEL, 2008.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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55. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | CASTRO, A. P. de; ARAÚJO JÚNIOR, S. D.; REIS, A. M. M.; MOURA, R. L.; FRANCINI FILHO, R. B.; PAPPAS JUNIOR, G. J.; RODRIGUES, T. B.; THOMPSON, F. L.; KRÜGER, R. H. Bacterial community associated with healthy and diseased reef coral Mussismilia hispida from Eastern Brazil. Microbial Ecology, v. 59, p. 658-667, 2010.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Recursos Genéticos e Biotecnologia. |
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56. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | MENDES, I. V.; GARCIA, M. B.; BITENCOURT, A. C. A.; SANTANA, R. H.; LINS, P. de C.; SILVEIRA, R.; SIMMONS, B. A.; GLADDEN, J. M.; KRUGER, R. H.; QUIRINO, B. F. Bacterial diversity dynamics in microbial consortia selected for lignin utilization. PLoS ONE, v. 16, n. 9, e0255083, 2021. PDF: il. color.Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
Biblioteca(s): Embrapa Agroenergia. |
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57. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | ARAÚJO, J. F.; CASTRO, A. R. de; COSTA, M. M. do C.; TOGAWA, R. C.; PAPPAS JUNIOR, G. J.; QUIRINO, B. F.; BUSTAMANTE, M. M. C.; WILLIAMSON, L.; HANDELSMAN, J.; KRUGER, R. H. Characterization of soil bacterial assemblies in Brazilian Savanna-Like vegetation reveals acidobacteria dominance. Microbial Ecology, v. 64, p. 760-770, 2012.Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 5 |
Biblioteca(s): Embrapa Agroenergia; Embrapa Recursos Genéticos e Biotecnologia. |
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58. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | SOUTO, B. de M.; ARAÚJO, A. C. B. de; HAMANN, P. R. V.; BASTOS, A. de R.; CUNHA, I. de S.; PEIXOTO, J.; KRUGER, R. H.; NORONHA, E. F.; QUIRINO, B. F. Functional screening of a Caatinga goat (Capra hircus) rumen metagenomic library reveals a novel GH3 beta-xylosidase. PLoS ONE, v. 16, n. 1, e024511, 2021.Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Agroenergia. |
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59. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | LIMA, R. A. T.; OLIVEIRA, G. d.; SOUZA, A. A.; LOPES, F. A. C.; SANTANA, R. H.; ISTVAN, P.; QUIRINO, B. F.; BARBOSA, J.; FREITAS, S. d.; GARAY, A. V.; KRUGER, R. H. Functional and structural characterization of a novel GH3 Beta-glucosidase from the gut metagenome of the Brazilian Cerrado termite Syntermes wheeleri. International Journal of Biological Macromolecules, v. 165, Part A, p. 822-834, Dec. 2020. 165Tipo: Artigo em Periódico Indexado |
Biblioteca(s): Embrapa Agroenergia. |
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60. | ![Imagem marcado/desmarcado](/consulta/web/img/desmarcado.png) | PALUAN, S. P.; SILVA, R. B.; CARVALHO, L. S.; SANTOS, D. F. K.; RAMOS, N. S. P. L.; BERGMAN, J. C.; NORONHA, E. F.; KRUGER, R. H.; QUIRINO, B. F. Enzymes of biotechnological interest prospected from a small insert metagenomic library constructed with Amazon soil microbial DNA. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE BIOQUÍMICA E BIOLOGIA MOLECULAR – SBBq, 39.; LATIN AMERICAN SYMPOSIUM ON THE MOLECULAR MECHANISMS OF SKELETAL MINERALIZATION, 1., 2010, Foz do Iguaçu, PR. Resumos... São Paulo: SBBq, 2010. Não paginado. Disponível em: < http://www.sbbq.org.br/2010/cdrom/busca.htm?query=quirino%2C+b.+f. >. Acesso em: 16 ago. 2010.Tipo: Resumo em Anais de Congresso |
Biblioteca(s): Embrapa Agroenergia. |
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Registros recuperados : 64 | |
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