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Registro Completo |
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Biblioteca(s): |
Embrapa Milho e Sorgo. |
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Data corrente: |
12/02/2014 |
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Data da última atualização: |
24/05/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
CANIATO, F. F.; HAMBLIN, M. T.; GUIMARAES, C. T.; ZHANG, Z.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. |
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Afiliação: |
CLAUDIA TEIXEIRA GUIMARAES, CNPMS; ROBERT EUGENE SCHAFFERT, CNPMS; JURANDIR VIEIRA DE MAGALHAES, CNPMS. |
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Título: |
Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
Plos One, San Francisco, v. 9, n. 1, p. 1-12, 2014. |
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DOI: |
10.1371/journal.pone.0087438 |
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Idioma: |
Inglês |
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Conteúdo: |
Root damage caused by aluminum (Al) toxicity is a major cause of grain yield reduction on acid soils, which are prevalent in tropical and subtropical regions of the world where food security is most tenuous. In sorghum, Al tolerance is conferred by SbMATE, an Al-activated root citrate efflux transporter that underlies the major Al tolerance locus, AltSB, on sorghum chromosome 3. We used association mapping to gain insights into the origin and evolution of Al tolerance in sorghum and to detect functional variants amenable to allele mining applications. Linkage disequilibrium across the AltSB locus decreased much faster than in previous reports in sorghum, and reached basal levels at approximately 1000 bp. Accordingly, intralocus recombination events were found to be extensive. SNPs and indels highly associated with Al tolerance showed a narrow frequency range, between 0.06 and 0.1, suggesting a rather recent origin of Al tolerance mutations within AltSB.A haplotype network analysis suggested a single geographic and racial origin of causative mutations in primordial guinea domesticates in West Africa. Al tolerance assessment in accessions harboring recombinant haplotypes suggests that causative polymorphisms are localized to a, 6 kb region including intronic polymorphisms and a transposon (MITE) insertion, whose size variation has been shown to be positively correlated with Al tolerance. The SNP with the strongest association signal, located in the second SbMATE intron, recovers 9 of the 14 highly Al tolerant accessions and 80% of all the Al tolerant and intermediately tolerant accessions in the association panel. Our results also demonstrate the pivotal importance of knowledge on the origin and evolution of Al tolerance mutations in molecular breeding applications. Allele mining strategies based on associated loci are expected to lead to the efficient identification, in diverse sorghum germplasm, of Al tolerant accessions able maintain grain yields under Al toxicity. MenosRoot damage caused by aluminum (Al) toxicity is a major cause of grain yield reduction on acid soils, which are prevalent in tropical and subtropical regions of the world where food security is most tenuous. In sorghum, Al tolerance is conferred by SbMATE, an Al-activated root citrate efflux transporter that underlies the major Al tolerance locus, AltSB, on sorghum chromosome 3. We used association mapping to gain insights into the origin and evolution of Al tolerance in sorghum and to detect functional variants amenable to allele mining applications. Linkage disequilibrium across the AltSB locus decreased much faster than in previous reports in sorghum, and reached basal levels at approximately 1000 bp. Accordingly, intralocus recombination events were found to be extensive. SNPs and indels highly associated with Al tolerance showed a narrow frequency range, between 0.06 and 0.1, suggesting a rather recent origin of Al tolerance mutations within AltSB.A haplotype network analysis suggested a single geographic and racial origin of causative mutations in primordial guinea domesticates in West Africa. Al tolerance assessment in accessions harboring recombinant haplotypes suggests that causative polymorphisms are localized to a, 6 kb region including intronic polymorphisms and a transposon (MITE) insertion, whose size variation has been shown to be positively correlated with Al tolerance. The SNP with the strongest association signal, located in the second SbMATE intron, recove... Mostrar Tudo |
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Thesagro: |
Alumínio; Melhoramento genético vegetal; Sorghum bicolor; Sorgo; Toxidez. |
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Thesaurus Nal: |
Plant breeding; Toxicity. |
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Categoria do assunto: |
G Melhoramento Genético |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/97088/1/Association-mapping.pdf
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Marc: |
LEADER 02867naa a2200289 a 4500
001 1979541
005 2017-05-24
008 2014 bl uuuu u00u1 u #d
024 7 $a10.1371/journal.pone.0087438$2DOI
100 1 $aCANIATO, F. F.
245 $aAssociation mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB.$h[electronic resource]
260 $c2014
520 $aRoot damage caused by aluminum (Al) toxicity is a major cause of grain yield reduction on acid soils, which are prevalent in tropical and subtropical regions of the world where food security is most tenuous. In sorghum, Al tolerance is conferred by SbMATE, an Al-activated root citrate efflux transporter that underlies the major Al tolerance locus, AltSB, on sorghum chromosome 3. We used association mapping to gain insights into the origin and evolution of Al tolerance in sorghum and to detect functional variants amenable to allele mining applications. Linkage disequilibrium across the AltSB locus decreased much faster than in previous reports in sorghum, and reached basal levels at approximately 1000 bp. Accordingly, intralocus recombination events were found to be extensive. SNPs and indels highly associated with Al tolerance showed a narrow frequency range, between 0.06 and 0.1, suggesting a rather recent origin of Al tolerance mutations within AltSB.A haplotype network analysis suggested a single geographic and racial origin of causative mutations in primordial guinea domesticates in West Africa. Al tolerance assessment in accessions harboring recombinant haplotypes suggests that causative polymorphisms are localized to a, 6 kb region including intronic polymorphisms and a transposon (MITE) insertion, whose size variation has been shown to be positively correlated with Al tolerance. The SNP with the strongest association signal, located in the second SbMATE intron, recovers 9 of the 14 highly Al tolerant accessions and 80% of all the Al tolerant and intermediately tolerant accessions in the association panel. Our results also demonstrate the pivotal importance of knowledge on the origin and evolution of Al tolerance mutations in molecular breeding applications. Allele mining strategies based on associated loci are expected to lead to the efficient identification, in diverse sorghum germplasm, of Al tolerant accessions able maintain grain yields under Al toxicity.
650 $aPlant breeding
650 $aToxicity
650 $aAlumínio
650 $aMelhoramento genético vegetal
650 $aSorghum bicolor
650 $aSorgo
650 $aToxidez
700 1 $aHAMBLIN, M. T.
700 1 $aGUIMARAES, C. T.
700 1 $aZHANG, Z.
700 1 $aSCHAFFERT, R. E.
700 1 $aKOCHIAN, L. V.
700 1 $aMAGALHAES, J. V.
773 $tPlos One, San Francisco$gv. 9, n. 1, p. 1-12, 2014.
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Registro original: |
Embrapa Milho e Sorgo (CNPMS) |
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| Registros recuperados : 53 | |
| 1. |  | CANIATO, F. F.; GUIMARAES, C. T.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. D. Association mapping for aluminum tolerance in candidate regions of the Altsb locus in sorghum. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia, SP. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 150.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
|    |
| 3. | | PINEROS, M. A.; SHAFF, J. E.; MANSLANK, H. S.; ALVES, V. M. C.; KOCHIAN, L. V. Aluminum resistance in maize cannot be solely explained by root organic acid exudation. A comparative physiological study Plant Physiology, Bethesda, v. 137, n. 1, p. 231-241, 2005.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Milho e Sorgo. |
|  |
| 8. | | MAGALHAES, J. V.; SOUSA, S. M. de; GUIMARAES, C. T.; KOCHIAN, L. V. The role of root morphology and architecture in phosphorus acquisiton: physiological, genetic, and molecular basis. In: HOSSAIN, M. A.; KAMIYA, T.; BURRITT, D. J.; PHAN TRAN, L.-S.; FUJIWARA, T. (Ed.). Plant macronutrient use efficiency: molecular and genomic perspectives in crop plants. London: Academic Press, 2017. cap. 7, p. 123-147.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 10. | | ALVES, V. M. C.; MAGALHAES, J. V. de; KOCHIAN, L. V.; PARENTONI, S. N.; PAIVA, E.; GARVIN, D. F. Acumulação de alumínio em ápices de raízes de milho. In: REUNIAO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRICAO DE PLANTAS, 24.; REUNIAO BRASILEIRA SOBRE MICORRIZAS, 8.; SIMPOSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 6.; REUNIAO BRASILEIRA DE BIOLOGIA DO SOLO, 3., 2000, Santa Maria, RS. Biodinâmica do solo: guia do congressista. [Viçosa, MG]: Sociedade Brasileira de Ciência do Solo; [São Paulo]: Sociedade Brasileira de Microbiologia; Santa Maria, RS: Universidade Federal de Santa Maria, Departamento de Solos, 2000. Fertbio 2000. p. 151.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 11. | | CANIATO, F. F.; HAMBLIN, M. T.; GUIMARAES, C. T.; ZHANG, Z.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. Association mapping provides insights into the origin and the fine structure of the sorghum aluminum tolerance locus, AltSB. Plos One, San Francisco, v. 9, n. 1, p. 1-12, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 12. | | LIU, J.; LUO, X.; SHAFF, J.; LIANG, C.; JIA, X.; LI, Z.; MAGALHAES, J.; KOCHIAN, L. V. A promoter-swap strategy between the AtALMT and AtMATE genes increased Arabidopsis aluminum resistance and improved carbon-use efficiency for aluminum resistance. The Plant Journal, Oxford, v. 71, p. 327-337, 2012.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 13. | | PAPERNIK, L. A.; BETHEA, A. S.; SINGLETON, T. E.; MAGALHAES, J. V.; GARVIN, D. F.; KOCHIAN, L. V. Physiological basis of reduced Al tolerance in ditelosomic lines of Chinese spring wheat. Planta, New York, v. 212, n. 5/6, p. 829-834, 2001.| Tipo: Artigo em Periódico Indexado |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 14. | | ALVES, V. M. C.; MAGALHAES, J. V. de; SHAFF, J.; SCHAFFERT, R. E.; GUIMARAES, C. T.; KOCHIAN, L. V. Exsudação de citrato e tolerânica ao alumínio em sorgo. In: CONGRESSO NACIONAL DE MILHO E SORGO, 26.; SIMPÓSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 2.; SIMPÓSIO SOBRE COLLETOTRICHUM GRAMINICOLA, 1., 2006, Belo Horizonte. Inovação para sistemas integrados de produção: trabalhos apresentados. [Sete Lagoas]: ABMS, 2006. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 15. | | HUFNAGEL, B.; GUIMARÃES, C. T.; CRAFT, E. J.; SHAFF, J. E.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. Exploiting sorghum genetic diversity for enhanced aluminum tolerance: allele mining based on the AltSB locus. Scientific Reports, v. 8, p. 1-13, July 2018. Article number: 10094.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 16. | | CANÇADO, G. M. A.; PINEROS, M. A.; MARON, L. G.; SHAFF, J.; CAMARGO, S. R.; MENOSSI, M.; ALVES, V. M. C.; KOCHIAN, L. V. Cloning and characterization of an ALMT1 homologue gene in Maize. In: INTERNATIONAL PLANT & ANIMAL GENOMES CONFERENCE, 15., 2007, San Diego, CA. [Proceedings...]. [S. l.: s.n.], 2007.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 17. | | LANA, U. G. D. P.; GUIMARAES, C. T.; ALVES, V. M. C.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. D. Caracterização molecular de um membro da família Multidrug and Toxic Compound Extrusion (MATE) que confere tolerância ao alumínio em sorgo. In: CONGRESSO BRASILEIRO DE GENÉTICA, 55., 2009, Águas de Lindóia, SP. Resumos... Ribeirão Preto: Sociedade Brasileira de Genética, 2009. p. 53.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 18. | | LANA, U. G. de P.; GUIMARAES, C. T.; ALVES, V. M. C.; SCHAFFERT, R. E.; KOCHIAN, L. V.; MAGALHAES, J. V. de. Caracterização molecular do gene SbMATE, principal responsável pela tolerância ao alumínio em sorgo. In: CONGRESSO NACIONAL DE MILHO E SORGO, 27.; SIMPOSIO BRASILEIRO SOBRE A LAGARTA-DO-CARTUCHO, SPODOPTERA FRUGIPERDA, 3.; WORKSHOP SOBRE MANEJO E ETIOLOGIA DA MANCHA BRANCA DO MILHO, 2008, Londrina. Agroenergia, produção de alimentos e mudanças climáticas: desafios para milho e sorgo: trabalhos e palestras. [Londrina]: IAPAR; [Sete Lagoas]: Embrapa Milho e Sorgo, 2008. 1 CD-ROM.| Tipo: Artigo em Anais de Congresso / Nota Técnica |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 19. | | LIU, Z.; QIN, T.; ATIENZA, M.; ZHAO, Y.; NGUYEN, H.; SHENG, H.; OLUKAYODE, O.; SONG, H.; PANJVANI, K.; MAGALHAES, J. V. de; LUCAS, W. J.; KOCHIAN, L. V. Constitutive basis of root system architecture: uncovering a promising trait for breeding nutrient-and drought-resilient crops. aBIOTECH, v. 4, p. 315–331, 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 3 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 20. | | MATONYEI, T. K.; CHEPROT, R. K.; LIU, J.; PIÑEROS, M. A.; SHAFF, J. E.; GUDU, S.; WERE, B.; MAGALHAES, J. V.; KOCHIAN, L. V. Physiological and molecular analysis of aluminum tolerance in selected Kenyan maize lines. Plant and Soil, Dordrecht, v. 377, p. 357-367, 2014.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Milho e Sorgo. |
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| Registros recuperados : 53 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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