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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
21/02/2008 |
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Data da última atualização: |
07/02/2020 |
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Tipo da produção científica: |
Resumo em Anais de Congresso |
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Autoria: |
HIGA, R. H.; TOZZI, C. L. |
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Afiliação: |
ROBERTO HIROSHI HIGA, CNPTIA; CLÉSIO LUIZ TOZZI, Unicamp. |
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Título: |
A simple and efficient method for predicting protein-protein binding sites. |
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Ano de publicação: |
2007 |
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Fonte/Imprenta: |
In: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 3., 2007, São Paulo. Proceedings... Campinas: Embrapa Informática Agropecuária, 2007. |
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Páginas: |
p. 146. |
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Idioma: |
Inglês |
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Notas: |
X-meeting 2007. |
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Conteúdo: |
In this work, we propose a strategy for predicting binding sites by exploiting the characteristic of core and rim regions of binding sites mentioned above, while using simple and well-know pattern recognition techniques. |
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Palavras-Chave: |
Bioinformática; Métodos computacionais. |
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Thesagro: |
Proteína. |
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Thesaurus Nal: |
Bioinformatics; Proteins. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/159378/1/PL-simple-xmeeting-2007.pdf
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Marc: |
LEADER 00949nam a2200205 a 4500
001 1004152
005 2020-02-07
008 2007 bl uuuu u00u1 u #d
100 1 $aHIGA, R. H.
245 $aA simple and efficient method for predicting protein-protein binding sites.$h[electronic resource]
260 $aIn: INTERNATIONAL CONFERENCE OF THE BRAZILIAN ASSOCIATION FOR BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 3., 2007, São Paulo. Proceedings... Campinas: Embrapa Informática Agropecuária$c2007
300 $ap. 146.
500 $aX-meeting 2007.
520 $aIn this work, we propose a strategy for predicting binding sites by exploiting the characteristic of core and rim regions of binding sites mentioned above, while using simple and well-know pattern recognition techniques.
650 $aBioinformatics
650 $aProteins
650 $aProteína
653 $aBioinformática
653 $aMétodos computacionais
700 1 $aTOZZI, C. L.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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Registro Completo
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Biblioteca(s): |
Embrapa Pesca e Aquicultura. |
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Data corrente: |
07/02/2013 |
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Data da última atualização: |
21/11/2013 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
B - 1 |
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Autoria: |
BORBA, R. S. de; SILVA, E. L. da; PONZETTO, J. M.; POZZOBON, A. P. B.; CENTOFANTE, L.; ALVES, A. L.; PARISE-MALTEMPI, P. P. |
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Afiliação: |
RAFAEL SPLENDORE DE BORBA, UNESP, Rio Claro-SP; EDSON LOURENÇO DA SILVA, UNESP, Rio Claro-SP; JOSI MARGARETE PONZETTO, UNESP, Rio Claro-SP; ALLAN PIERRE BONETTI POZZOBON, UNESP, Rio Claro-SP; LIANO CENTOFANTE, UFMT; ANDERSON LUIS ALVES, CNPASA; PATRÍCIA PASQUALI PARISE-MALTEMPI, UNESP, Rio Claro-SP. |
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Título: |
Genetic structure of the ornamental tetra fish species Piabucus melanostomus Holmberg, 1891 (CHARACIDAE, IGUANODECTINAE) in the Brazilian Pantanal wetlands inferred by mitochondrial DNA sequences. |
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Ano de publicação: |
2013 |
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Fonte/Imprenta: |
Biota Neotropica, São Paulo, v. 13, n. 1, p. 42-46, 2013. |
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ISSN: |
1676-0603 |
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Idioma: |
Inglês |
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Conteúdo: |
The subfamily Iguanodectinae comprises a group of small Neotropical fishes composed by two genera and 11 nominal species widely distributed in the Atlantic drainages of South America. Piabucus is the only genus of Iguanodectinae found in the Paraguay River basin, especially in the Pantanal of Mato Grosso State, where it is represented by Piabucus melanostomus. Given the wide distribution and the low dispersion capacity of this species, due the ecological constraints, it is possible that many interesting genetic features could be found in different populations. In this way, the aim of his work was to perform the phylogeographic pattern of P. melanostomus populations using mitochondrial DNA sequences. A total of 13 individuals from three rivers belonging the Mato Grosso wetland were sampled. The ATP sintetase (subunits 6 and 8) gene was completely sequenced, the mean of nucleotide base composition in the sequences was 31.2% (T), 30.2% (C), 26.9% (A) and 11.9% (G), with no gene saturation. The population analysis in the TCS program generated a network with six haplotypes (A to F), where the ancestral haplotype (A) has a frequency of 25% and is composed by individuals from Cuiabá and Paraguay Rivers. The phylogenetic analysis showed the occurrence of two mtDNA lineages (1 and 2), the distance observed between the two lineages was 0.6%. The phylogenetic and phylogeographic results as well as the negative values of Fst for some populations, indicate a possible occurrence of gene flow among the analyzed populations. These results highlights the importance of flood pulse existent on wetland as a vehicle that permits a temporary connection among isolated population maintaining the species genetic variability. MenosThe subfamily Iguanodectinae comprises a group of small Neotropical fishes composed by two genera and 11 nominal species widely distributed in the Atlantic drainages of South America. Piabucus is the only genus of Iguanodectinae found in the Paraguay River basin, especially in the Pantanal of Mato Grosso State, where it is represented by Piabucus melanostomus. Given the wide distribution and the low dispersion capacity of this species, due the ecological constraints, it is possible that many interesting genetic features could be found in different populations. In this way, the aim of his work was to perform the phylogeographic pattern of P. melanostomus populations using mitochondrial DNA sequences. A total of 13 individuals from three rivers belonging the Mato Grosso wetland were sampled. The ATP sintetase (subunits 6 and 8) gene was completely sequenced, the mean of nucleotide base composition in the sequences was 31.2% (T), 30.2% (C), 26.9% (A) and 11.9% (G), with no gene saturation. The population analysis in the TCS program generated a network with six haplotypes (A to F), where the ancestral haplotype (A) has a frequency of 25% and is composed by individuals from Cuiabá and Paraguay Rivers. The phylogenetic analysis showed the occurrence of two mtDNA lineages (1 and 2), the distance observed between the two lineages was 0.6%. The phylogenetic and phylogeographic results as well as the negative values of Fst for some populations, indicate a possible occurrence of gene f... Mostrar Tudo |
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Thesagro: |
Genética; Mitocondria; Peixe ornamental. |
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Thesaurus NAL: |
Genetics; Mitochondrial DNA; Ornamental fish; Pantanal. |
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Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/92818/1/Piabucus.pdf
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Marc: |
LEADER 02660naa a2200289 a 4500
001 1948641
005 2013-11-21
008 2013 bl uuuu u00u1 u #d
022 $a1676-0603
100 1 $aBORBA, R. S. de
245 $aGenetic structure of the ornamental tetra fish species Piabucus melanostomus Holmberg, 1891 (CHARACIDAE, IGUANODECTINAE) in the Brazilian Pantanal wetlands inferred by mitochondrial DNA sequences.$h[electronic resource]
260 $c2013
520 $aThe subfamily Iguanodectinae comprises a group of small Neotropical fishes composed by two genera and 11 nominal species widely distributed in the Atlantic drainages of South America. Piabucus is the only genus of Iguanodectinae found in the Paraguay River basin, especially in the Pantanal of Mato Grosso State, where it is represented by Piabucus melanostomus. Given the wide distribution and the low dispersion capacity of this species, due the ecological constraints, it is possible that many interesting genetic features could be found in different populations. In this way, the aim of his work was to perform the phylogeographic pattern of P. melanostomus populations using mitochondrial DNA sequences. A total of 13 individuals from three rivers belonging the Mato Grosso wetland were sampled. The ATP sintetase (subunits 6 and 8) gene was completely sequenced, the mean of nucleotide base composition in the sequences was 31.2% (T), 30.2% (C), 26.9% (A) and 11.9% (G), with no gene saturation. The population analysis in the TCS program generated a network with six haplotypes (A to F), where the ancestral haplotype (A) has a frequency of 25% and is composed by individuals from Cuiabá and Paraguay Rivers. The phylogenetic analysis showed the occurrence of two mtDNA lineages (1 and 2), the distance observed between the two lineages was 0.6%. The phylogenetic and phylogeographic results as well as the negative values of Fst for some populations, indicate a possible occurrence of gene flow among the analyzed populations. These results highlights the importance of flood pulse existent on wetland as a vehicle that permits a temporary connection among isolated population maintaining the species genetic variability.
650 $aGenetics
650 $aMitochondrial DNA
650 $aOrnamental fish
650 $aPantanal
650 $aGenética
650 $aMitocondria
650 $aPeixe ornamental
700 1 $aSILVA, E. L. da
700 1 $aPONZETTO, J. M.
700 1 $aPOZZOBON, A. P. B.
700 1 $aCENTOFANTE, L.
700 1 $aALVES, A. L.
700 1 $aPARISE-MALTEMPI, P. P.
773 $tBiota Neotropica, São Paulo$gv. 13, n. 1, p. 42-46, 2013.
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Embrapa Pesca e Aquicultura (CNPASA) |
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