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Registro Completo |
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Biblioteca(s): |
Embrapa Recursos Genéticos e Biotecnologia. |
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Data corrente: |
12/02/2015 |
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Data da última atualização: |
26/04/2024 |
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Tipo da produção científica: |
Artigo em Anais de Congresso |
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Autoria: |
BIEGELMEYER, P.; OLIVEIRA, M. M.; CARDOSO, L. L.; GOMES, C. C. G.; HIGA, R. H.; DIONELLO, N. J. L.; CAETANO, A. R.; STEIBEL, J. P.; CARDOSO, F. F. |
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Afiliação: |
PATRÍCIA BIEGELMEYER, UFPEL; MAURICIO MORGADO OLIVEIRA; LEANDRO LUNARDINI CARDOSO; CLAUDIA CRISTINA GULIAS GOMES, CPPSUL; ROBERTO HIROSHI HIGA, CNPTIA; NELSON JOSÉ LAURINO DIONELLO, UFPEL; ALEXANDRE RODRIGUES CAETANO, CENARGEN; JUAN P. STEIBEL, MICHIGAN STATE UNIVERSITY; FERNANDO FLORES CARDOSO, CPPSUL. |
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Título: |
Estimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds. |
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Ano de publicação: |
2014 |
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Fonte/Imprenta: |
In: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS, 2014. |
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Páginas: |
Não paginado. |
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Idioma: |
Inglês |
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Conteúdo: |
A set of 41,241 SNP genotypes from 2,435 Hereford (HH) and Braford (BO) bovines were analyzed to estimate linkage disequilibrium (LD) levels, persistence of phase and effective population size of these populations. LD levels were estimated using the squared correlation of alleles at two loci (r2) at varying distances. Average r2 between adjacent SNP was 0.21 for HH and 0.16 for BO. Average inter-marker distance was 61 kb in both breeds. Useful LD values (r2>0.2) were observed at 0-60 kb bins in HH and 0-20 kb bins in BO. Breeds demonstrated moderate to strong persistence of phase at all distances (range=0.53-0.97). The greatest phase correlations (r>0.9) were found in 0-50 kb bins. LD estimates decreased rapidly with increasing distances between SNPs, however, useful LD was observed in genomic regions spanning up to ~50 kb. |
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Palavras-Chave: |
Desequilíbrio de ligação; Persistence of phase; Tamanho populacional. |
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Thesagro: |
Gado de corte. |
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Thesaurus Nal: |
Beef cattle; Linkage disequilibrium; Population size. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/114443/1/estimation-Biegelmeyer.pdf
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Marc: |
LEADER 01874nam a2200301 a 4500
001 2008655
005 2024-04-26
008 2014 bl uuuu u01u1 u #d
100 1 $aBIEGELMEYER, P.
245 $aEstimation of linkage disequilibrium, persistence of phase and effective population size of Brazilian Hereford and Braford breeds.$h[electronic resource]
260 $aIn: WORLD CONGRESS ON GENETICS APPLIED TO LIVESTOCK PRODUCTION, 10., 2014, Vancouver, British Columbia, Canada. Proceedings... Champaign: ASAS$c2014
300 $aNão paginado.
520 $aA set of 41,241 SNP genotypes from 2,435 Hereford (HH) and Braford (BO) bovines were analyzed to estimate linkage disequilibrium (LD) levels, persistence of phase and effective population size of these populations. LD levels were estimated using the squared correlation of alleles at two loci (r2) at varying distances. Average r2 between adjacent SNP was 0.21 for HH and 0.16 for BO. Average inter-marker distance was 61 kb in both breeds. Useful LD values (r2>0.2) were observed at 0-60 kb bins in HH and 0-20 kb bins in BO. Breeds demonstrated moderate to strong persistence of phase at all distances (range=0.53-0.97). The greatest phase correlations (r>0.9) were found in 0-50 kb bins. LD estimates decreased rapidly with increasing distances between SNPs, however, useful LD was observed in genomic regions spanning up to ~50 kb.
650 $aBeef cattle
650 $aLinkage disequilibrium
650 $aPopulation size
650 $aGado de corte
653 $aDesequilíbrio de ligação
653 $aPersistence of phase
653 $aTamanho populacional
700 1 $aOLIVEIRA, M. M.
700 1 $aCARDOSO, L. L.
700 1 $aGOMES, C. C. G.
700 1 $aHIGA, R. H.
700 1 $aDIONELLO, N. J. L.
700 1 $aCAETANO, A. R.
700 1 $aSTEIBEL, J. P.
700 1 $aCARDOSO, F. F.
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Registro original: |
Embrapa Recursos Genéticos e Biotecnologia (CENARGEN) |
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| Registros recuperados : 208 | |
| 15. |  | GIACHETTO, P. F.; HIGA, R. H. Bioinformática aplicada à agricultura. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Tecnologias da informação e comunicação e suas relações com a agricultura. Brasília, DF: Embrapa, 2014. Cap. 4. p. 67-83.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 16. | | GIACHETTO, P. F.; HIGA, R. H. Bioinformatics applied to agriculture. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; LUCHIARI JUNIOR, A.; ROMANI, L. A. S. (Ed.). Information and communication technologies and their relations with agriculture. Brasília, DF: Embrapa, 2016. ch. 4, p. 67-86.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 208 | |
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