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Registro Completo |
Biblioteca(s): |
Embrapa Gado de Leite. |
Data corrente: |
18/01/2023 |
Data da última atualização: |
11/04/2023 |
Tipo da produção científica: |
Artigo em Periódico Indexado |
Autoria: |
GARCIA, A. O.; OTTO, P. I.; GLATZL JUNIOR, L. A.; ROCHA, R. de F. B.; SANTOS, M. G. dos; OLIVEIRA, D. A. de; SILVA, M. V. G. B.; PANETTO, J. C. do C.; MACHADO, M. A.; VERNEQUE, R. da S.; GUIMARÃES, S. E. F. |
Afiliação: |
ARIELLY OLIVEIRA GARCIA, Universidade Federal de Viçosa; PAMELA ITAJARA OTTO, Universidade Federal de Santa Maria; LUIZ AFONSO GLATZL JUNIOR, Universidade Federal de Juiz de Fora; RENATA DE FÁTIMA BRETANHA ROCHA, Universidade Federal de Viçosa; MATEUS GUIMARÃES DOS SANTOS, Universidade Federal de Viçosa; DANIELE ALVES DE OLIVEIRA, Universidade Federal de Santa Maria; MARCOS VINICIUS GUALBERTO B SILVA, CNPGL; JOAO CLAUDIO DO CARMO PANETTO, CNPGL; MARCO ANTONIO MACHADO, CNPGL; RUI DA SILVA VERNEQUE, CNPGL; SIMONE ELIZA FACIONI GUIMARÃES, Universidade Federal de Viçosa. |
Título: |
Pedigree reconstruction and population structure using SNP markers in Gir cattle. |
Ano de publicação: |
2023 |
Fonte/Imprenta: |
Journal of Applied Genetics, v. 64, p. 329-340, 2023. |
DOI: |
https://doi.org/10.1007/s13353-023-00747-x |
Idioma: |
Inglês |
Conteúdo: |
Our objective was to establish a SNPs panel for pedigree reconstruction using microarrays of different densities and evaluate the genomic relationship coefficient of the inferred pedigree, in addition to analyzing the population structure based on genomic analyses in Gir cattle. For parentage analysis and genomic relationship, 16,205 genotyped Gir animals (14,458 females and 1747 males) and 1810 common markers to the four SNP microarrays were used. For population structure analyses, including linkage disequilibrium, effective population size, and runs of homozygosity (ROH), genotypes from 21,656 animals were imputed. Likelihood ratio (LR) approach was used to reconstruct the pedigree, deepening the pedigree and showing it is well established in terms of recent information. Coefficients for each relationship category of the inferred pedigree were adequate. Linkage disequilibrium showed rapid decay. We detected a decrease in the effective population size over the last 50 generations, with the average generation interval around 9.08 years. Higher ROH-based inbreeding coefficient in a class of short ROH segments, with moderate to high values, was also detected, suggesting bottlenecks in the Gir genome. Breeding strategies to minimize inbreeding and avoid massive use of few proven sires with high genetic value are suggested to maintain genetic variability in future generations. In addition, we recommend reducing the generation interval to maximize genetic progress and increase effective population size. MenosOur objective was to establish a SNPs panel for pedigree reconstruction using microarrays of different densities and evaluate the genomic relationship coefficient of the inferred pedigree, in addition to analyzing the population structure based on genomic analyses in Gir cattle. For parentage analysis and genomic relationship, 16,205 genotyped Gir animals (14,458 females and 1747 males) and 1810 common markers to the four SNP microarrays were used. For population structure analyses, including linkage disequilibrium, effective population size, and runs of homozygosity (ROH), genotypes from 21,656 animals were imputed. Likelihood ratio (LR) approach was used to reconstruct the pedigree, deepening the pedigree and showing it is well established in terms of recent information. Coefficients for each relationship category of the inferred pedigree were adequate. Linkage disequilibrium showed rapid decay. We detected a decrease in the effective population size over the last 50 generations, with the average generation interval around 9.08 years. Higher ROH-based inbreeding coefficient in a class of short ROH segments, with moderate to high values, was also detected, suggesting bottlenecks in the Gir genome. Breeding strategies to minimize inbreeding and avoid massive use of few proven sires with high genetic value are suggested to maintain genetic variability in future generations. In addition, we recommend reducing the generation interval to maximize genetic progress and increase ef... Mostrar Tudo |
Thesagro: |
Bovino; DNA; Endogamia; Gado Gir; Marcador Genético. |
Categoria do assunto: |
L Ciência Animal e Produtos de Origem Animal |
URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/item/248991/1/Pedigree-reconstruction-and-population-structure-using-SNP-markers-in-Gir-cattle.pdf
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Marc: |
LEADER 02441naa a2200313 a 4500 001 2151052 005 2023-04-11 008 2023 bl uuuu u00u1 u #d 024 7 $ahttps://doi.org/10.1007/s13353-023-00747-x$2DOI 100 1 $aGARCIA, A. O. 245 $aPedigree reconstruction and population structure using SNP markers in Gir cattle.$h[electronic resource] 260 $c2023 520 $aOur objective was to establish a SNPs panel for pedigree reconstruction using microarrays of different densities and evaluate the genomic relationship coefficient of the inferred pedigree, in addition to analyzing the population structure based on genomic analyses in Gir cattle. For parentage analysis and genomic relationship, 16,205 genotyped Gir animals (14,458 females and 1747 males) and 1810 common markers to the four SNP microarrays were used. For population structure analyses, including linkage disequilibrium, effective population size, and runs of homozygosity (ROH), genotypes from 21,656 animals were imputed. Likelihood ratio (LR) approach was used to reconstruct the pedigree, deepening the pedigree and showing it is well established in terms of recent information. Coefficients for each relationship category of the inferred pedigree were adequate. Linkage disequilibrium showed rapid decay. We detected a decrease in the effective population size over the last 50 generations, with the average generation interval around 9.08 years. Higher ROH-based inbreeding coefficient in a class of short ROH segments, with moderate to high values, was also detected, suggesting bottlenecks in the Gir genome. Breeding strategies to minimize inbreeding and avoid massive use of few proven sires with high genetic value are suggested to maintain genetic variability in future generations. In addition, we recommend reducing the generation interval to maximize genetic progress and increase effective population size. 650 $aBovino 650 $aDNA 650 $aEndogamia 650 $aGado Gir 650 $aMarcador Genético 700 1 $aOTTO, P. I. 700 1 $aGLATZL JUNIOR, L. A. 700 1 $aROCHA, R. de F. B. 700 1 $aSANTOS, M. G. dos 700 1 $aOLIVEIRA, D. A. de 700 1 $aSILVA, M. V. G. B. 700 1 $aPANETTO, J. C. do C. 700 1 $aMACHADO, M. A. 700 1 $aVERNEQUE, R. da S. 700 1 $aGUIMARÃES, S. E. F. 773 $tJournal of Applied Genetics$gv. 64, p. 329-340, 2023.
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Embrapa Gado de Leite (CNPGL) |
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1. | | FAGUNDES, P. R. R.; TERRES, A. L.; MAGALHÃES JÚNIOR, A. M.; FRANCO, D. F.; RANGEL, P. H. N.; GUIMARÃES, E. P.; CUTRIN, V. dos A. Melhoramento genético do arroz irrigado no Rio Grande do Sul, utilizando seleção recorrente. Pelotas: EMBRAPA-CPACT, 1998. 6 p. (EMBRAPA-CPACT. Pesquisa em Andamento, 33)Tipo: Folder/Folheto/Cartilha |
Biblioteca(s): Embrapa Arroz e Feijão; Embrapa Clima Temperado. |
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2. | | MAGALHAES JUNIOR, A. M. de; MORAIS, O. P. de; FAGUNDES, P. R. R.; CORDEIRO, A. C. C.; FRANCO, D. F.; PEREIRA, J. A.; COLOMBARI FILHO, J. M.; ANDRES, A.; TORGA, P. P.; NUNES, C. D. M.; MOURA NETO, F. P.; PETRINI, J. A.; RANGEL, P. H. N.; MARTINS, J. F. da S.; FILIPPI, M. C. C. de; LOBO, V. L. da S.; LOPES, A. M.; OLIVEIRA, J. P. de; NEVES, P. de C. F.; CUTRIN, V.; STAUT, L. A.; RABELO, R. R.; BASSINELLO, P. Z.; FRAGOSO, D. de B.; AZEVEDO, R. de. BRS Pampeira: Cultivar de Arroz Irrigado de Elevado Potencial Produtivo. Pelotas: Embrapa Clima Temperado, 2016. 8 p. (Embrapa Clima Temperado, Comunicado Técnico, 332.)Tipo: Comunicado Técnico/Recomendações Técnicas |
Biblioteca(s): Embrapa Amazônia Oriental; Embrapa Arroz e Feijão; Embrapa Clima Temperado; Embrapa Meio-Norte; Embrapa Roraima. |
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